Rroxscaffold_6G00400360

Belongs to the cullin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000162
Physical Location & Seq
Reverse (-)
22479062 .. 22480476
1415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00400360.1

Sequence Viewer

Length: 360 bp
ATGCGGACTACATTCAACTTTGATATGGTAAACTTGAATTTTTTTCATTCGGTTGGTACTGCTGAAATATATGGTTTGGAGGAAGAAGAAGAAGGAGTAGCGAGAGAGAAAGATGAAGATGATGTTTGTTATTATGTGATTGACCTGATCAATAAGAAGAAGGTGATTGAAAAAGTTGACAAGGAGAGGGTCAATATGATAGACGCTGCACTTGTGCGTGTTGCAAAGAACGAAAAAATTATTGGTCATAAGGATCTGATCGGGGACCGTGTTGAGCAAGTACAGAATTTGAAGCCCGATATCACGGTGATTGAGAGACAGATTGGTAGTTTGGTTCGTCGTGACTACCTAGAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0000228 GO:0000793 GO:0000794 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009941 GO:0009987 GO:0010033 GO:0010087 GO:0010154 GO:0015630 GO:0019005 GO:0019899 GO:0022414 GO:0023052 GO:0031461 GO:0031625 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0042221 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0099402 GO:1901700 GO:1901701 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04340 ko04341 ko04350 ko04710 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 ko05168 ko05200 map00190 map01100 map04110 map04111 map04114 map04120 map04141 map04310 map04340 map04341 map04350 map04710 map04714 map04723 map04932 map05010 map05012 map05016 map05168 map05200
Pfam Domains
Protein Families
Cullin Cullin_Nedd8

Protein Analysis

119

Amino Acids

13.86

Weight (kDa)

5.0

Isoelectric Point (pI)

33.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cullin_Nedd8 PF10557 62 - 119 3.4e-12 Cullin protein neddylation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 4
AclWI GGATC 1 cut(s) 261
AcsI RAATTY 2 cut(s) 37, 286
AfaI GTAC 2 cut(s) 58, 282
AgsI TTSAA 4 cut(s) 16, 37, 170, 292
AjuI GAANNNNNNNTTGG 2 cut(s) 225, 257
Alw26I GTCTC 1 cut(s) 310
AlwI GGATC 1 cut(s) 261
ApeKI GCWGC 1 cut(s) 206
ApoI RAATTY 2 cut(s) 37, 286
AspS9I GGNCC 1 cut(s) 265
AsuHPI GGTGA 2 cut(s) 175, 319
AvaII GGWCC 1 cut(s) 265
BbvI GCAGC 1 cut(s) 193
BclI TGATCA 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 310
BfaI CTAG 1 cut(s) 350
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
Bme18I GGWCC 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 265
BmiI GGNNCC 1 cut(s) 266
BseXI GCAGC 1 cut(s) 193
BsgI GTGCAG 1 cut(s) 192
BslFI GGGAC 1 cut(s) 278
BsmAI GTCTC 1 cut(s) 310
BsmFI GGGAC 1 cut(s) 278
Bsp143I GATC 3 cut(s) 147, 253, 258
BspACI CCGC 1 cut(s) 4
BspLI GGNNCC 1 cut(s) 266
BspPI GGATC 1 cut(s) 261
BssMI GATC 3 cut(s) 147, 253, 258
Bst4CI ACNGT 2 cut(s) 269, 307
BstKTI GATC 3 cut(s) 150, 256, 261
BstMAI GTCTC 1 cut(s) 310
BstMBI GATC 3 cut(s) 147, 253, 258
BstV1I GCAGC 1 cut(s) 193
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
Cfr13I GGNCC 1 cut(s) 265
CseI GACGC 1 cut(s) 212
Csp6I GTAC 2 cut(s) 57, 281
CviJI RGCY 1 cut(s) 295
CviKI_1 RGCY 1 cut(s) 295
CviQI GTAC 2 cut(s) 57, 281
DpnI GATC 3 cut(s) 149, 255, 260
DpnII GATC 3 cut(s) 147, 253, 258
Eco32I GATATC 1 cut(s) 301
Eco47I GGWCC 1 cut(s) 265
EcoRV GATATC 1 cut(s) 301
FaiI YATR 6 cut(s) 26, 70, 72, 135, 197, 249
FaqI GGGAC 1 cut(s) 278
FbaI TGATCA 1 cut(s) 147
Fnu4HI GCNGC 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 1 cut(s) 350
GluI GCNGC 1 cut(s) 207
HgaI GACGC 1 cut(s) 212
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HphI GGTGA 2 cut(s) 175, 319
Hpy166II GTNNAC 2 cut(s) 31, 178
Hpy188I TCNGA 1 cut(s) 258
Hpy188III TCNNGA 1 cut(s) 341
Hpy8I GTNNAC 2 cut(s) 31, 178
Hpy99I CGWCG 1 cut(s) 342
HpyAV CCTTC 2 cut(s) 86, 154
HpyCH4III ACNGT 2 cut(s) 269, 307
HpyCH4V TGCA 2 cut(s) 209, 224
Ksp22I TGATCA 1 cut(s) 147
Kzo9I GATC 3 cut(s) 147, 253, 258
LpnPI CCDG 1 cut(s) 158
Lsp1109I GCAGC 1 cut(s) 193
MaeI CTAG 1 cut(s) 350
MaeIII GTNAC 1 cut(s) 341
MalI GATC 3 cut(s) 149, 255, 260
MboI GATC 3 cut(s) 147, 253, 258
MboII GAAGA 5 cut(s) 95, 98, 101, 128, 169
MflI RGATCY 1 cut(s) 253
MluCI AATT 3 cut(s) 37, 237, 286
MnlI CCTC 2 cut(s) 73, 180
NdeII GATC 3 cut(s) 147, 253, 258
NlaIV GGNNCC 1 cut(s) 266
NmuCI GTSAC 1 cut(s) 341
PkrI GCNGC 1 cut(s) 208
PspN4I GGNNCC 1 cut(s) 266
PspPI GGNCC 1 cut(s) 265
PsuI RGATCY 1 cut(s) 253
RsaI GTAC 2 cut(s) 58, 282
RsaNI GTAC 2 cut(s) 57, 281
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 3 cut(s) 147, 253, 258
Sau96I GGNCC 1 cut(s) 265
SetI ASST 3 cut(s) 147, 165, 351
SinI GGWCC 1 cut(s) 265
Sse9I AATT 3 cut(s) 37, 237, 286
SsiI CCGC 1 cut(s) 4
SspMI CTAG 1 cut(s) 350
TaaI ACNGT 2 cut(s) 269, 307
TasI AATT 3 cut(s) 37, 237, 286
TatI WGTACW 1 cut(s) 280
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 2 cut(s) 35, 129
VpaK11BI GGWCC 1 cut(s) 265
XapI RAATTY 2 cut(s) 37, 286
XspI CTAG 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.