pycom04g05320

Belongs to the cullin family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
5112392 .. 5113300
909 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g05320.1

Sequence Viewer

Length: 909 bp
ATGGGTTACCAAGTTATCGAGTGGGATCAAGGATGGGACTACGTACAGCAGGGGATCGCAAAGATGAACAGGATTATACAAGGATCATCAGAACCTCAGTTCACCTCAGAAGAATATATGAGCCTTTACACAACCATCTATAACATGTCTATTCAACAACCTCCTCATAATTATTCTCAGCAGCTTTATGAAAAGTATCAGGAGACAATTGAGGAATACATTTCTTCAACAGTGCTGCCGCCCCTAATGGAGAAGCATGATGAGTTTATGTTGCAGGAGTATGTCAAAAATTGGGTAAATTATAAAGTTATGTTTAGGTGGCTCTCACACTTCTTTGGTTTTCTTGATGACCATGGCATCACTCGGAATCAGACATCACTTCCTGGGCCGAATGAAGTTGTACTTAACTGCTTCCGTAATTTGGTTTATCAGAAGGTAAATGCTAATGTGAGATATTATGTACTTGGACTTATGCATAAAGAACGCGAGGGAGAGAAAATTGACAGAGAACTACTGAAGAATGTGATAAATATATATGTTGAAATTGAAATGGGAGAATTGGATGCGTATGAAAAGGACTTCGAAGAATACATGCTCATTGATACTCGCAAGTACTATTTGCATAAAGCATCAAGTTGGATTTTGGAGTACTCGTACGCAGATTACATGTTGAAGGTAGAGGAATGCTTGAGAAGGGAGAGGGATAGAGTTTCTTGTTACCTGCTTCCGAGCAGTCAGAAGAAGCTAATGGAGACGGTGAAACATTGCTTGGTGGTGGTTCATGGAAATCAACTGATTCAGAAGAAGCATTCTGTATCTGGATGTACTTTGCTCACGGTTGAAAATCTGGAGGAGCTTTCTAGGAAATTTATTGCTAATTTGGCATTGGAACGCTTGAGTCTCTGCTGA

Protein Analysis

303

Amino Acids

36.0

Weight (kDa)

5.57

Isoelectric Point (pI)

53.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cullin PF00888 26 - 288 1.3e-47 Cullin alpha solenoid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 303
Acc36I ACCTGC 1 cut(s) 729
AccII CGCG 1 cut(s) 486
AciI CCGC 1 cut(s) 239
AclWI GGATC 3 cut(s) 33, 62, 91
AcsI RAATTY 1 cut(s) 866
AcuI CTGAAG 1 cut(s) 536
AfaI GTAC 7 cut(s) 45, 402, 462, 614, 650, 656, 826
AfiI CCNNNNNNNGG 1 cut(s) 421
AflIII ACRYGT 2 cut(s) 144, 666
AgsI TTSAA 6 cut(s) 155, 228, 542, 548, 673, 842
AjnI CCWGG 1 cut(s) 382
AjuI GAANNNNNNNTTGG 2 cut(s) 752, 784
AluBI AGCT 3 cut(s) 184, 745, 856
AluI AGCT 3 cut(s) 184, 745, 856
Alw26I GTCTC 3 cut(s) 197, 746, 905
AlwI GGATC 3 cut(s) 33, 62, 91
AoxI GGCC 1 cut(s) 386
ApeKI GCWGC 2 cut(s) 181, 235
ApoI RAATTY 1 cut(s) 866
AspS9I GGNCC 1 cut(s) 386
AsuHPI GGTGA 2 cut(s) 94, 769
AsuII TTCGAA 1 cut(s) 582
BbvI GCAGC 2 cut(s) 193, 222
BccI CCATC 2 cut(s) 27, 143
BciT130I CCWGG 1 cut(s) 384
BcoDI GTCTC 3 cut(s) 197, 746, 905
BfaI CTAG 1 cut(s) 861
BfuAI ACCTGC 1 cut(s) 729
BisI GCNGC 3 cut(s) 182, 236, 239
BlsI GCNGC 3 cut(s) 183, 237, 240
BmcAI AGTACT 2 cut(s) 614, 650
Bme1390I CCNGG 1 cut(s) 384
BmgT120I GGNCC 1 cut(s) 386
BmrFI CCNGG 1 cut(s) 384
BmsI GCATC 3 cut(s) 366, 553, 638
BpmI CTGGAG 1 cut(s) 869
Bpu14I TTCGAA 1 cut(s) 582
BpuEI CTTGAG 1 cut(s) 709
BsaAI YACGTR 1 cut(s) 43
BsaJI CCNNGG 2 cut(s) 352, 383
BsaXI ACNNNNNCTCC 2 cut(s) 638, 668
Bsc4I CCNNNNNNNGG 1 cut(s) 421
Bse3DI GCAATG 1 cut(s) 763
BseBI CCWGG 1 cut(s) 384
BseDI CCNNGG 2 cut(s) 352, 383
BseGI GGATG 3 cut(s) 38, 568, 827
BseLI CCNNNNNNNGG 1 cut(s) 421
BseMI GCAATG 1 cut(s) 763
BseMII CTCAG 3 cut(s) 110, 120, 191
BseRI GAGGAG 2 cut(s) 153, 866
BseXI GCAGC 2 cut(s) 193, 222
Bsh1236I CGCG 1 cut(s) 486
BshFI GGCC 1 cut(s) 388
BsiWI CGTACG 1 cut(s) 654
BslFI GGGAC 1 cut(s) 50
BslI CCNNNNNNNGG 1 cut(s) 421
BsmAI GTCTC 3 cut(s) 197, 746, 905
BsmBI CGTCTC 1 cut(s) 746
BsmFI GGGAC 1 cut(s) 50
BsmI GAATGC 2 cut(s) 689, 808
BsnI GGCC 1 cut(s) 388
Bsp119I TTCGAA 1 cut(s) 582
Bsp143I GATC 3 cut(s) 25, 54, 83
Bsp19I CCATGG 1 cut(s) 352
BspACI CCGC 1 cut(s) 239
BspANI GGCC 1 cut(s) 388
BspCNI CTCAG 3 cut(s) 109, 119, 190
BspFNI CGCG 1 cut(s) 486
BspMI ACCTGC 1 cut(s) 729
BspPI GGATC 3 cut(s) 33, 62, 91
BspT104I TTCGAA 1 cut(s) 582
BsrDI GCAATG 1 cut(s) 763
BssECI CCNNGG 2 cut(s) 352, 383
BssMI GATC 3 cut(s) 25, 54, 83
BssT1I CCWWGG 1 cut(s) 352
Bst2UI CCWGG 1 cut(s) 384
Bst4CI ACNGT 3 cut(s) 232, 757, 838
BstBAI YACGTR 1 cut(s) 43
BstBI TTCGAA 1 cut(s) 582
BstDEI CTNAG 3 cut(s) 96, 106, 177
BstDSI CCRYGG 1 cut(s) 352
BstEII GGTNACC 1 cut(s) 5
BstF5I GGATG 3 cut(s) 38, 568, 827
BstFNI CGCG 1 cut(s) 486
BstKTI GATC 3 cut(s) 28, 57, 86
BstMAI GTCTC 3 cut(s) 197, 746, 905
BstMBI GATC 3 cut(s) 25, 54, 83
BstMWI GCNNNNNNNGC 1 cut(s) 881
BstNI CCWGG 1 cut(s) 384
BstNSI RCATGY 3 cut(s) 148, 595, 670
BstPI GGTNACC 1 cut(s) 5
BstSCI CCNGG 1 cut(s) 382
BstSNI TACGTA 1 cut(s) 43
BstUI CGCG 1 cut(s) 486
BstV1I GCAGC 2 cut(s) 193, 222
BsuRI GGCC 1 cut(s) 388
BtgI CCRYGG 1 cut(s) 352
BtsCI GGATG 3 cut(s) 38, 568, 827
BtsIMutI CAGTG 1 cut(s) 237
BveI ACCTGC 1 cut(s) 729
Cfr13I GGNCC 1 cut(s) 386
Csp6I GTAC 7 cut(s) 44, 401, 461, 613, 649, 655, 825
CviAII CATG 6 cut(s) 145, 257, 353, 592, 667, 782
CviJI RGCY 6 cut(s) 123, 184, 322, 388, 745, 856
CviKI_1 RGCY 6 cut(s) 123, 184, 322, 388, 745, 856
CviQI GTAC 7 cut(s) 44, 401, 461, 613, 649, 655, 825
DdeI CTNAG 3 cut(s) 96, 106, 177
DpnI GATC 3 cut(s) 27, 56, 85
DpnII GATC 3 cut(s) 25, 54, 83
Eco105I TACGTA 1 cut(s) 43
Eco130I CCWWGG 1 cut(s) 352
Eco57I CTGAAG 1 cut(s) 536
Eco91I GGTNACC 1 cut(s) 5
EcoO65I GGTNACC 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 382
EcoT14I CCWWGG 1 cut(s) 352
EcoT22I ATGCAT 1 cut(s) 477
ErhI CCWWGG 1 cut(s) 352
Esp3I CGTCTC 1 cut(s) 746
FaeI CATG 6 cut(s) 148, 260, 356, 595, 670, 785
FalI AAGNNNNNCTT 2 cut(s) 387, 419
FaqI GGGAC 1 cut(s) 50
FatI CATG 6 cut(s) 144, 256, 352, 591, 666, 781
Fnu4HI GCNGC 3 cut(s) 182, 236, 239
FokI GGATG 3 cut(s) 45, 575, 834
Fsp4HI GCNGC 3 cut(s) 182, 236, 239
FspBI CTAG 1 cut(s) 861
GluI GCNGC 3 cut(s) 182, 236, 239
GsuI CTGGAG 1 cut(s) 869
HaeIII GGCC 1 cut(s) 388
Hin1II CATG 6 cut(s) 148, 260, 356, 595, 670, 785
HinfI GANTC 3 cut(s) 367, 796, 898
HphI GGTGA 2 cut(s) 94, 769
Hpy166II GTNNAC 1 cut(s) 102
Hpy188I TCNGA 8 cut(s) 91, 109, 366, 372, 432, 729, 738, 801
Hpy188III TCNNGA 4 cut(s) 200, 344, 819, 848
Hpy8I GTNNAC 1 cut(s) 102
HpyAV CCTTC 3 cut(s) 427, 667, 687
HpyCH4III ACNGT 3 cut(s) 232, 757, 838
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 3 cut(s) 274, 475, 622
HpyF10VI GCNNNNNNNGC 1 cut(s) 881
HpyF3I CTNAG 3 cut(s) 96, 106, 177
HpySE526I ACGT 1 cut(s) 42
Hsp92II CATG 6 cut(s) 148, 260, 356, 595, 670, 785
Kzo9I GATC 3 cut(s) 25, 54, 83
LmnI GCTCC 1 cut(s) 853
LpnPI CCDG 9 cut(s) 35, 55, 185, 260, 369, 396, 734, 804, 833
Lsp1109I GCAGC 2 cut(s) 193, 222
LweI GCATC 3 cut(s) 366, 553, 638
MaeI CTAG 1 cut(s) 861
MaeII ACGT 1 cut(s) 42
MaeIII GTNAC 2 cut(s) 5, 716
MalI GATC 3 cut(s) 27, 56, 85
MboI GATC 3 cut(s) 25, 54, 83
MboII GAAGA 6 cut(s) 122, 216, 529, 596, 751, 814
MfeI CAATTG 1 cut(s) 207
MlyI GAGTC 1 cut(s) 907
MmeI TCCRAC 1 cut(s) 617
MnlI CCTC 9 cut(s) 105, 115, 171, 174, 205, 481, 673, 693, 844
Mph1103I ATGCAT 1 cut(s) 477
MseI TTAA 1 cut(s) 405
MspR9I CCNGG 1 cut(s) 384
MunI CAATTG 1 cut(s) 207
Mva1269I GAATGC 2 cut(s) 689, 808
MvaI CCWGG 1 cut(s) 384
MvnI CGCG 1 cut(s) 486
MwoI GCNNNNNNNGC 1 cut(s) 881
NcoI CCATGG 1 cut(s) 352
NdeII GATC 3 cut(s) 25, 54, 83
NlaIII CATG 6 cut(s) 148, 260, 356, 595, 670, 785
NsiI ATGCAT 1 cut(s) 477
NspI RCATGY 3 cut(s) 148, 595, 670
NspV TTCGAA 1 cut(s) 582
PciI ACATGT 2 cut(s) 144, 666
PctI GAATGC 2 cut(s) 689, 808
PfeI GAWTC 2 cut(s) 367, 796
Pfl23II CGTACG 1 cut(s) 654
PkrI GCNGC 3 cut(s) 183, 237, 240
PleI GAGTC 1 cut(s) 906
PpsI GAGTC 1 cut(s) 906
Ppu21I YACGTR 1 cut(s) 43
PscI ACATGT 2 cut(s) 144, 666
PsiI TTATAA 1 cut(s) 303
Psp6I CCWGG 1 cut(s) 382
PspEI GGTNACC 1 cut(s) 5
PspGI CCWGG 1 cut(s) 382
PspLI CGTACG 1 cut(s) 654
PspPI GGNCC 1 cut(s) 386
RsaI GTAC 7 cut(s) 45, 402, 462, 614, 650, 656, 826
RsaNI GTAC 7 cut(s) 44, 401, 461, 613, 649, 655, 825
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 3 cut(s) 182, 236, 239
Sau3AI GATC 3 cut(s) 25, 54, 83
Sau96I GGNCC 1 cut(s) 386
ScaI AGTACT 2 cut(s) 614, 650
SchI GAGTC 1 cut(s) 907
ScrFI CCNGG 1 cut(s) 384
SfaNI GCATC 3 cut(s) 366, 553, 638
SfuI TTCGAA 1 cut(s) 582
SmlI CTYRAG 2 cut(s) 688, 895
SmoI CTYRAG 2 cut(s) 688, 895
SnaBI TACGTA 1 cut(s) 43
SsiI CCGC 1 cut(s) 239
SspMI CTAG 1 cut(s) 861
StyD4I CCNGG 1 cut(s) 382
StyI CCWWGG 1 cut(s) 352
TaaI ACNGT 3 cut(s) 232, 757, 838
TaiI ACGT 1 cut(s) 45
TaqI TCGA 2 cut(s) 18, 582
TatI WGTACW 5 cut(s) 400, 460, 612, 648, 824
TauI GCSGC 1 cut(s) 241
TfiI GAWTC 2 cut(s) 367, 796
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TscAI CASTG 1 cut(s) 237
TseI GCWGC 2 cut(s) 181, 235
TspDTI ATGAA 5 cut(s) 80, 204, 408, 585, 770
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 1 cut(s) 237
XapI RAATTY 1 cut(s) 866
XceI RCATGY 3 cut(s) 148, 595, 670
XspI CTAG 1 cut(s) 861
ZrmI AGTACT 2 cut(s) 614, 650
Zsp2I ATGCAT 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.