Rh3CG273800

Belongs to the cullin family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Forward (+)
27159630 .. 27159911
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG273800.1

Sequence Viewer

Length: 282 bp
ATGTTGTGTTCAACTCTAAGTTCAGAACACAAAAGAAAAGATCGACTTGAGCTCCCTTTTCACAAGTTGATCAATGAGAAGAAGGTGATTGAAAAAGTTGACAAGGATAGGGTCAATATTATAGACGTTGCACTTGTGTGTGTTGCAAAGAACCAAAAAATTATTGTTCATAAGGATTTAATCATGGACTGTGTTGAGCAAGTACAAAATTTCAAGCCCGATATCACAGTGATTAAGAGACAGATTGGTAATCTGGGTCGCCGTGACTACCTAGATAAATAG

Protein Analysis

93

Amino Acids

10.88

Weight (kDa)

9.24

Isoelectric Point (pI)

32.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cullin_Nedd8 PF10557 36 - 92 6.4e-11 Cullin protein neddylation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 208
AfaI GTAC 1 cut(s) 204
AgsI TTSAA 3 cut(s) 12, 92, 214
AleI CACNNNNGTG 1 cut(s) 136
AluBI AGCT 1 cut(s) 52
AluI AGCT 1 cut(s) 52
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 1 cut(s) 232
ApoI RAATTY 1 cut(s) 208
AsuHPI GGTGA 1 cut(s) 97
BanII GRGCYC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 54
BceAI ACGGC 1 cut(s) 246
BclI TGATCA 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 232
BfaI CTAG 1 cut(s) 272
BpuEI CTTGAG 1 cut(s) 68
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
BsiHKAI GWGCWC 1 cut(s) 54
BsmAI GTCTC 1 cut(s) 232
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 2 cut(s) 40, 69
BssMI GATC 2 cut(s) 40, 69
Bst4CI ACNGT 2 cut(s) 191, 229
BstDEI CTNAG 1 cut(s) 17
BstKTI GATC 2 cut(s) 43, 72
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 2 cut(s) 40, 69
BtsIMutI CAGTG 1 cut(s) 234
Csp6I GTAC 1 cut(s) 203
CviAII CATG 1 cut(s) 184
CviJI RGCY 2 cut(s) 52, 217
CviKI_1 RGCY 2 cut(s) 52, 217
CviQI GTAC 1 cut(s) 203
DdeI CTNAG 1 cut(s) 17
DpnI GATC 2 cut(s) 42, 71
DpnII GATC 2 cut(s) 40, 69
Ecl136II GAGCTC 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 54
Eco32I GATATC 1 cut(s) 223
Eco53kI GAGCTC 1 cut(s) 52
EcoICRI GAGCTC 1 cut(s) 52
EcoRV GATATC 1 cut(s) 223
EcoT38I GRGCYC 1 cut(s) 54
FaeI CATG 1 cut(s) 187
FaiI YATR 3 cut(s) 122, 171, 185
FalI AAGNNNNNCTT 2 cut(s) 30, 62
FatI CATG 1 cut(s) 183
FbaI TGATCA 1 cut(s) 69
FriOI GRGCYC 1 cut(s) 54
FspBI CTAG 1 cut(s) 272
Hin1II CATG 1 cut(s) 187
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 1 cut(s) 25
Hpy8I GTNNAC 1 cut(s) 100
HpyAV CCTTC 1 cut(s) 76
HpyCH4III ACNGT 2 cut(s) 191, 229
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 2 cut(s) 131, 146
HpyF3I CTNAG 1 cut(s) 17
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 1 cut(s) 187
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 2 cut(s) 40, 69
LmnI GCTCC 1 cut(s) 57
LpnPI CCDG 1 cut(s) 239
MaeI CTAG 1 cut(s) 272
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 263
MalI GATC 2 cut(s) 42, 71
MboI GATC 2 cut(s) 40, 69
MboII GAAGA 1 cut(s) 91
MhlI GDGCHC 1 cut(s) 54
MluCI AATT 2 cut(s) 159, 208
MseI TTAA 2 cut(s) 179, 234
MslI CAYNNNNRTG 1 cut(s) 136
NdeII GATC 2 cut(s) 40, 69
NlaIII CATG 1 cut(s) 187
NmuCI GTSAC 1 cut(s) 263
OliI CACNNNNGTG 1 cut(s) 136
Psp124BI GAGCTC 1 cut(s) 54
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
RseI CAYNNNNRTG 1 cut(s) 136
SacI GAGCTC 1 cut(s) 54
SaqAI TTAA 2 cut(s) 179, 234
Sau3AI GATC 2 cut(s) 40, 69
SduI GDGCHC 1 cut(s) 54
SetI ASST 4 cut(s) 54, 87, 129, 273
SmiMI CAYNNNNRTG 1 cut(s) 136
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 2 cut(s) 159, 208
SspI AATATT 1 cut(s) 118
SspMI CTAG 1 cut(s) 272
SstI GAGCTC 1 cut(s) 54
TaaI ACNGT 2 cut(s) 191, 229
TaiI ACGT 1 cut(s) 129
TaqI TCGA 1 cut(s) 43
TasI AATT 2 cut(s) 159, 208
TatI WGTACW 1 cut(s) 202
Tru1I TTAA 2 cut(s) 179, 234
Tru9I TTAA 2 cut(s) 179, 234
TscAI CASTG 1 cut(s) 234
TseFI GTSAC 1 cut(s) 263
Tsp45I GTSAC 1 cut(s) 263
TspDTI ATGAA 1 cut(s) 158
TspRI CASTG 1 cut(s) 234
XapI RAATTY 1 cut(s) 208
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.