Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0000162

Physical Location & Seq

Genomic Coordinates Forward (+)

7634856 .. 7637273

Gene Structure 2418 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1052400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAACAGGATTGTACAAGGATCATCAGAACATCAGTTCACCTCAGAAGAATATATGAAGCTTTACACAACCATCTATAACATGTCTATTCAGCAACCTCCTCATAATTATTCTCGGCAGCTTTATGAAAAGTATCGGGAGACATTTGAGGAATACATTTCTTCAACAGTGCTTCCCTCTCTTCTGGAGAAGCATCATGAGTTTATGTTGCAGGAGTTTGTCAGAAGTTGGGGAAATTATAAAGTTATGTTTAGGTGGCTGTCACACGTCTTTCGTTTTTCTGATGACCACTGCATCACTCAGAATCAGACATCACTTCCTGGGCCAAACGAAGTTGCACTTAATTGCTTCCGTAATTTGGTTTATCAGAAGGTAAATGCTGATGTGAGATATTATGTACTTGGCCTTATTGATAAAGAACGCGAGGGAGAGAAAATTGACAGAGCACTACTGAAGAATGTGATAAATATATATGTTGAAATTGGAATGGGAGAATTGGATGTGTATGAAAGGGACTTCGAAGAATACATGCTCATTCAGACTCGCGAGTACTATTGCCACAAAACATCAAGTTGGATTTTGGAGTACTCTTATACGGATTACATGTTGAAGGCTGAAGAATGCTTGAGAAGGGAGAAGGATAGAGTTTCTTATTACCTGCTTCCAAGCAGTGAGAAGAAGCTAATGGAGACAGTGAAACATTGGTTGGTAGTGATTCATGCAAATCAACTGATTGAGAAGAAACATTCTGAATCTGGATGTGCTTTGCTTACAATTGAAAATTTGGAGGAGCTTTCTAGGAGATTTATTGCTAGTGTGGCACTGGAACAGCAAGTTCCTGCTGAAGGTTCGACTATTGTTCAACAGGCTGAAGATGCTGTAATGATTGAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000228 GO:0000793 GO:0000794 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009524 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0010154 GO:0015630 GO:0019899 GO:0022414 GO:0023052 GO:0031461 GO:0031625 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0042221 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0099402 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04340 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04340 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Cullin Cullin_Nedd8

Protein Analysis

299

Amino Acids

35.46

Weight (kDa)

5.33

Isoelectric Point (pI)

54.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cullin	PF00888	10 - 269	1.1e-47	Cullin alpha solenoid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02980 AT1G02980 AT1G43140 AT1G59790 AT1G59790 AT1G59800 AT4G02570 AT4G02570 AT4G02570 AT4G02570
fragaria_vesca	FvH4_2g25090 FvH4_2g25090 FvH4_3g22682 FvH4_3g22690 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19660 FvH4_5g19681 FvH4_5g19681 FvH4_5g19691 FvH4_5g19691 FvH4_5g19691 FvH4_5g19700 FvH4_5g19701 FvH4_5g19701 FvH4_5g19702
malus_domestica	MD03G1282100.v1.1 MD04G1059100.v1.1 MD04G1059200.v1.1 MD04G1059400.v1.1 MD04G1059700.v1.1 MD06G1052400.v1.1 MD06G1052500.v1.1 MD06G1052800.v1.1 MD11G1301900.v1.1 MD13G1135800.v1.1 MD13G1135900.v1.1 MD13G1170300.v1.1 MD16G1171700.v1.1
prunus_persica	Prupe.1G138700_v2.0.a1 Prupe.1G138700_v2.0.a1 Prupe.5G063100_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063200_v2.0.a1 Prupe.5G063300_v2.0.a1 Prupe.5G063500_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.5G063700_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1 Prupe.8G255500_v2.0.a1
pyrus_communis	pycom03g22290 pycom04g05320 pycom06g04400 pycom06g04420 pycom06g04430 pycom11g26450 pycom13g11840 pycom13g14580 pycom16g14410 pycom16g14420 pycom16g14430
rosa_chinensis	RchiOBHm_Chr3g0471921 RchiOBHm_Chr4g0421701 RchiOBHm_Chr5g0039501 RchiOBHm_Chr5g0039521 RchiOBHm_Chr5g0039591 RchiOBHm_Chr6g0293141 RchiOBHm_Chr7g0204391 RchiOBHm_Chr7g0204411 RchiOBHm_Chr7g0204451 RchiOBHm_Chr7g0204461 RchiOBHm_Chr7g0204501 RchiOBHm_Chr7g0204511
rosa_laevigata	RLG00000003454 RLG00000003455 RLG00000003456 RLG00000003458 RLG00000003464 RLG00000003466 RLG00000007657 RLG00000011971 RLG00000024117 RLG00000024118 RLG00000033923 RLG00000033924 RLG00000033929
rosa_multiflora	Rmu_co8215636.1_g000001 Rmu_co8492929.1_g000001 Rmu_co8518197.1_g000002 Rmu_sc0000090.1_g000010 Rmu_sc0000090.1_g000014 Rmu_sc0000423.1_g000004 Rmu_sc0000423.1_g000006 Rmu_sc0001042.1_g000001 Rmu_sc0002140.1_g000001 Rmu_sc0002918.1_g000004 Rmu_sc0004533.1_g000009 Rmu_sc0029623.1_g000001 Rmu_ssc0000400.1_g000014 Rmu_ssc0000400.1_g000030 Rmu_ssc0000400.1_g000034 Rmu_ssc0000443.1_g000014 Rmu_ssc0000443.1_g000015 Rmu_ssc0000443.1_g000016
rosa_roxburghii	Rroxscaffold_1G00040720 Rroxscaffold_1G00040730 Rroxscaffold_1G00041600 Rroxscaffold_1G00041640 Rroxscaffold_1G00041650 Rroxscaffold_3G00253030 Rroxscaffold_3G00253040 Rroxscaffold_3G00253050 Rroxscaffold_3G00253070 Rroxscaffold_3G00253080 Rroxscaffold_3G00253130 Rroxscaffold_3G00253160 Rroxscaffold_5G00363940 Rroxscaffold_5G00381580 Rroxscaffold_6G00400360 Rroxscaffold_7G00174410
rosa_rugosa	Rorug03G0121400 Rorug03G0121400 Rorug04G0175000 Rorug04G0175100 Rorug05G0180100 Rorug06G0232800 Rorug06G0232900 Rorug07G0083000 Rorug07G0083000 Rorug07G0083100 Rorug07G0083200 Rorug07G0083300 Rorug07G0083400 Rorug07G0083500 Rorug07G0083700 Rorug07G0084200 Rorug07G0084300 Rorug07G0084500 Rorug07G0084600 Rorug07G0084600 Rorug07G0084700
rosa_samantha	Rh3CG189000 Rh3CG189100 Rh3CG189200 Rh3CG196500 Rh3CG196600 Rh3CG273800 Rh4DG232900 Rh5DG278900 Rh5DG279100 Rh5DG279400 Rh6CG359800 Rh7DG220500 Rh7DG220700 Rh7DG221000 Rh7DG221100 Rh7DG221600 Rh7DG221700
rosa_wichuraiana	Rw0G005710 Rw0G005720 Rw3G016800 Rw4G019990 Rw5G024970 Rw5G024990 Rw6G030120 Rw7G018470 Rw7G018500 Rw7G018530 Rw7G018540 Rw7G018550 Rw7G018560

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	240
Acc36I	ACCTGC	1 cut(s)	666
AccII	CGCG	2 cut(s)	423, 546
AclWI	GGATC	1 cut(s)	28
AcsI	RAATTY	1 cut(s)	781
AcuI	CTGAAG	4 cut(s)	473, 636, 864, 891
AfaI	GTAC	4 cut(s)	15, 399, 551, 587
AfiI	CCNNNNNNNGG	2 cut(s)	358, 845
AflIII	ACRYGT	3 cut(s)	81, 265, 603
AgsI	TTSAA	5 cut(s)	165, 479, 610, 779, 863
AjiI	CACGTC	1 cut(s)	268
AjnI	CCWGG	1 cut(s)	319
AjuI	GAANNNNNNNTTGG	2 cut(s)	689, 721
AluBI	AGCT	4 cut(s)	61, 121, 682, 793
AluI	AGCT	4 cut(s)	61, 121, 682, 793
Alw21I	GWGCWC	1 cut(s)	448
Alw26I	GTCTC	2 cut(s)	134, 683
AlwI	GGATC	1 cut(s)	28
AoxI	GGCC	2 cut(s)	323, 403
ApeKI	GCWGC	1 cut(s)	118
ApoI	RAATTY	1 cut(s)	781
AspS9I	GGNCC	1 cut(s)	323
AsuHPI	GGTGA	1 cut(s)	31
AsuII	TTCGAA	1 cut(s)	519
Bbv12I	GWGCWC	1 cut(s)	448
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	321
BcoDI	GTCTC	2 cut(s)	134, 683
BfaI	CTAG	2 cut(s)	798, 813
BfuAI	ACCTGC	1 cut(s)	666
BisI	GCNGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	120
BmcAI	AGTACT	2 cut(s)	551, 587
Bme1390I	CCNGG	1 cut(s)	321
BmgBI	CACGTC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	323
BmrFI	CCNGG	1 cut(s)	321
BmsI	GCATC	3 cut(s)	202, 303, 865
BpmI	CTGGAG	1 cut(s)	206
Bpu14I	TTCGAA	1 cut(s)	519
BpuEI	CTTGAG	1 cut(s)	646
BsaJI	CCNNGG	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	2 cut(s)	358, 845
Bse1I	ACTGG	1 cut(s)	828
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	320
BseGI	GGATG	2 cut(s)	505, 764
BseLI	CCNNNNNNNGG	2 cut(s)	358, 845
BseMII	CTCAG	2 cut(s)	57, 314
BseNI	ACTGG	1 cut(s)	828
BseRI	GAGGAG	2 cut(s)	90, 803
BseXI	GCAGC	1 cut(s)	130
Bsh1236I	CGCG	2 cut(s)	423, 546
BshFI	GGCC	2 cut(s)	325, 405
BsiHKAI	GWGCWC	1 cut(s)	448
BslFI	GGGAC	1 cut(s)	527
BslI	CCNNNNNNNGG	2 cut(s)	358, 845
BsmAI	GTCTC	2 cut(s)	134, 683
BsmFI	GGGAC	1 cut(s)	527
BsmI	GAATGC	1 cut(s)	626
BsnI	GGCC	2 cut(s)	325, 405
Bsp119I	TTCGAA	1 cut(s)	519
Bsp1286I	GDGCHC	1 cut(s)	448
Bsp1407I	TGTACA	1 cut(s)	13
Bsp143I	GATC	1 cut(s)	20
Bsp68I	TCGCGA	1 cut(s)	546
BspANI	GGCC	2 cut(s)	325, 405
BspCNI	CTCAG	2 cut(s)	56, 313
BspFNI	CGCG	2 cut(s)	423, 546
BspHI	TCATGA	1 cut(s)	196
BspMI	ACCTGC	1 cut(s)	666
BspPI	GGATC	1 cut(s)	28
BspT104I	TTCGAA	1 cut(s)	519
BsrGI	TGTACA	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	828
BssECI	CCNNGG	1 cut(s)	320
BssMI	GATC	1 cut(s)	20
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	2 cut(s)	169, 694
Bst6I	CTCTTC	1 cut(s)	186
BstAUI	TGTACA	1 cut(s)	13
BstBI	TTCGAA	1 cut(s)	519
BstDEI	CTNAG	2 cut(s)	43, 300
BstENI	CCTNNNNNAGG	1 cut(s)	843
BstF5I	GGATG	2 cut(s)	505, 764
BstFNI	CGCG	2 cut(s)	423, 546
BstKTI	GATC	1 cut(s)	23
BstMAI	GTCTC	2 cut(s)	134, 683
BstMBI	GATC	1 cut(s)	20
BstMWI	GCNNNNNNNGC	2 cut(s)	818, 875
BstNI	CCWGG	1 cut(s)	321
BstNSI	RCATGY	3 cut(s)	85, 532, 607
BstSCI	CCNGG	1 cut(s)	319
BstUI	CGCG	2 cut(s)	423, 546
BstV1I	GCAGC	1 cut(s)	130
BsuRI	GGCC	2 cut(s)	325, 405
BtrI	CACGTC	1 cut(s)	268
BtsCI	GGATG	2 cut(s)	505, 764
BtsI	GCAGTG	2 cut(s)	289, 676
BtsIMutI	CAGTG	5 cut(s)	174, 289, 676, 699, 821
BtuMI	TCGCGA	1 cut(s)	546
BveI	ACCTGC	1 cut(s)	666
CciI	TCATGA	1 cut(s)	196
Cfr13I	GGNCC	1 cut(s)	323
Csp6I	GTAC	4 cut(s)	14, 398, 550, 586
CviAII	CATG	5 cut(s)	82, 197, 529, 604, 719
CviJI	RGCY	9 cut(s)	61, 121, 259, 325, 405, 614, 682, 793, 869
CviKI_1	RGCY	9 cut(s)	61, 121, 259, 325, 405, 614, 682, 793, 869
CviQI	GTAC	4 cut(s)	14, 398, 550, 586
DdeI	CTNAG	2 cut(s)	43, 300
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Eco57I	CTGAAG	4 cut(s)	473, 636, 864, 891
EcoNI	CCTNNNNNAGG	1 cut(s)	843
EcoRII	CCWGG	1 cut(s)	319
FaeI	CATG	5 cut(s)	85, 200, 532, 607, 722
FalI	AAGNNNNNCTT	2 cut(s)	324, 356
FaqI	GGGAC	1 cut(s)	527
FatI	CATG	5 cut(s)	81, 196, 528, 603, 718
Fnu4HI	GCNGC	1 cut(s)	119
FokI	GGATG	2 cut(s)	512, 771
Fsp4HI	GCNGC	1 cut(s)	119
FspBI	CTAG	2 cut(s)	798, 813
GluI	GCNGC	1 cut(s)	119
GsuI	CTGGAG	1 cut(s)	206
HaeIII	GGCC	2 cut(s)	325, 405
Hin1II	CATG	5 cut(s)	85, 200, 532, 607, 722
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	4 cut(s)	304, 541, 715, 752
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	1 cut(s)	39
Hpy188I	TCNGA	9 cut(s)	28, 46, 224, 283, 303, 309, 369, 540, 751
Hpy188III	TCNNGA	5 cut(s)	137, 185, 197, 545, 756
Hpy8I	GTNNAC	1 cut(s)	39
HpyAV	CCTTC	5 cut(s)	364, 604, 624, 631, 839
HpyCH4III	ACNGT	2 cut(s)	169, 694
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	4 cut(s)	211, 294, 338, 722
HpyF10VI	GCNNNNNNNGC	2 cut(s)	818, 875
HpyF3I	CTNAG	2 cut(s)	43, 300
HpySE526I	ACGT	1 cut(s)	267
Hsp92II	CATG	5 cut(s)	85, 200, 532, 607, 722
Kzo9I	GATC	1 cut(s)	20
LmnI	GCTCC	1 cut(s)	790
LpnPI	CCDG	9 cut(s)	170, 197, 306, 333, 671, 741, 809, 851, 852
Lsp1109I	GCAGC	1 cut(s)	130
LweI	GCATC	3 cut(s)	202, 303, 865
MaeI	CTAG	2 cut(s)	798, 813
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	261
MalI	GATC	1 cut(s)	22
MboI	GATC	1 cut(s)	20
MboII	GAAGA	9 cut(s)	59, 153, 173, 466, 533, 629, 688, 751, 884
MfeI	CAATTG	1 cut(s)	774
MhlI	GDGCHC	1 cut(s)	448
MluCI	AATT	9 cut(s)	106, 235, 343, 355, 435, 480, 494, 774, 781
MlyI	GAGTC	1 cut(s)	535
MmeI	TCCRAC	1 cut(s)	554
MnlI	CCTC	8 cut(s)	52, 108, 111, 142, 187, 418, 781, 883
MseI	TTAA	1 cut(s)	342
MspR9I	CCNGG	1 cut(s)	321
MunI	CAATTG	1 cut(s)	774
Mva1269I	GAATGC	1 cut(s)	626
MvaI	CCWGG	1 cut(s)	321
MvnI	CGCG	2 cut(s)	423, 546
MwoI	GCNNNNNNNGC	2 cut(s)	818, 875
NdeII	GATC	1 cut(s)	20
NlaIII	CATG	5 cut(s)	85, 200, 532, 607, 722
NmeAIII	GCCGAG	1 cut(s)	94
NmuCI	GTSAC	1 cut(s)	261
NruI	TCGCGA	1 cut(s)	546
NspI	RCATGY	3 cut(s)	85, 532, 607
NspV	TTCGAA	1 cut(s)	519
PagI	TCATGA	1 cut(s)	196
PciI	ACATGT	2 cut(s)	81, 603
PctI	GAATGC	1 cut(s)	626
PfeI	GAWTC	3 cut(s)	304, 715, 752
PkrI	GCNGC	1 cut(s)	120
PleI	GAGTC	1 cut(s)	535
PpsI	GAGTC	1 cut(s)	535
PscI	ACATGT	2 cut(s)	81, 603
PsiI	TTATAA	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspPI	GGNCC	1 cut(s)	323
RruI	TCGCGA	1 cut(s)	546
RsaI	GTAC	4 cut(s)	15, 399, 551, 587
RsaNI	GTAC	4 cut(s)	14, 398, 550, 586
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	1 cut(s)	119
Sau3AI	GATC	1 cut(s)	20
Sau96I	GGNCC	1 cut(s)	323
ScaI	AGTACT	2 cut(s)	551, 587
SchI	GAGTC	1 cut(s)	535
ScrFI	CCNGG	1 cut(s)	321
SduI	GDGCHC	1 cut(s)	448
SfaNI	GCATC	3 cut(s)	202, 303, 865
SfuI	TTCGAA	1 cut(s)	519
SmlI	CTYRAG	1 cut(s)	625
SmoI	CTYRAG	1 cut(s)	625
Sse9I	AATT	9 cut(s)	106, 235, 343, 355, 435, 480, 494, 774, 781
SspMI	CTAG	2 cut(s)	798, 813
StyD4I	CCNGG	1 cut(s)	319
TaaI	ACNGT	2 cut(s)	169, 694
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	2 cut(s)	519, 851
TasI	AATT	9 cut(s)	106, 235, 343, 355, 435, 480, 494, 774, 781
TatI	WGTACW	4 cut(s)	13, 397, 549, 585
TfiI	GAWTC	3 cut(s)	304, 715, 752
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	5 cut(s)	174, 296, 676, 699, 828
TseFI	GTSAC	1 cut(s)	261
TseI	GCWGC	1 cut(s)	118
Tsp45I	GTSAC	1 cut(s)	261
TspDTI	ATGAA	5 cut(s)	17, 71, 141, 522, 707
TspGWI	ACGGA	2 cut(s)	341, 611
TspRI	CASTG	5 cut(s)	174, 296, 676, 699, 828
XagI	CCTNNNNNAGG	1 cut(s)	843
XapI	RAATTY	1 cut(s)	781
XceI	RCATGY	3 cut(s)	85, 532, 607
XspI	CTAG	2 cut(s)	798, 813
ZrmI	AGTACT	2 cut(s)	551, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.