AT3G13290

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000324
Physical Location & Seq
Forward (+)
4297282 .. 4303634
6353 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G13290.1

Sequence Viewer

Length: 4023 bp
ATGGCGTCTTCACCTGGTAACACTAACCCTCACAATCCTCCGCCGTTCGATCTCGGTACTATCTTCAAACCCTCATCCAACCCTTATCCTCCCCCTACAGGTCCGTTTCTTAACAACCAGTACAATCAGCAACTATACGCGCCGCCTGGTATCGCCGCCCAACCATCTCCGGTGAATCAAACGCAACAGGATGTGTCTTCCTCTTCCTCCGCTACTAACTTGCAACCACAGAGAACGCTATCTTATCCCACGCCACCTCTCAATCCCCAATCTCCCCGTGTCAATCACAATCCGGGAACGCACATCCTCGCTCTCCTCAACAACGGAGGTGCCGTGGCGAACCAAGAGCCGTCGCATCACAACGAGATCGCTCGAGCTTTTCCCGGCGGTTCGGGTCCTATTCATGTTCCAAGCGGTAAAATGCCCAAGGGAAGGCGATTGGTTGGTGAACATGCGGTGTATGATGTTGATGTGAGATTACAGGGAGAGATTCAACCGCAGCTGGAGGTGACTCCGATTACCAAGTACGGCTCGGATCCTCAGCTTGTACTCGGTAGGCAAATTGCTGTGAATAAGGTCTACATTTGCTATGGATTGAAAGGAGGAAGCATTCGTGTTCTCAATATCAACACAGCATTGAGGTCTCTGTTCCGTGGCCATTCTCAGAGAGTAACGGACATGGCTTTCTTTGCCGAAGATGTTCATCTCTTAGCTAGTGTTAGTCTAGATGGAAAAGTTTTTGTGTGGAAAATTTCCGAAGGATCTGAGGGAGATGAACAATCCCAGATAACTGGAAAGATAGTTGTTGCTCTTCAGATACTTGGAGAGGAAGACACCAAACATCCACGTGTCTGTTGGCACTGCCACAAACAGGAAATTTTGGTAGTTTCAATTGGTAAACATGTGCTGCGAATCGATACTACAAAAGTTGGCAGAGGTGAAGTGTTCTCTGCCGAGGCACCTCTCCAGTGTCATCTTGATAAACTAATTGATGGTGTTCAGATTGTGGGTAAGCATGATGGAGAAGTGACAGATTTGTCAATGTGCCAATGGATGACCACGCGCCTGGTTTCTTCTTCAGTTGATGGCACGGTTAAGATATGGCAAGATCGTAAGACACAACCACTTGTAGTATTGAGACCTCATGATGGACTTCCAGTCAATTCTGCCATATTTGTGACATCCCCGGAAAGACCTGATCACATCATACTTATCACGGGGGGTCCTCTAAATCGAGAAATCAAGATTTGGGTCTCCGCTGGGGAAGAAGGGTGGCTTCTACCCGCTGATACTGAATCGTGGAGATGTACCCAGACACTTGATTTGAAAAGTTCAACTGAGCCACAAGCTGAAAAGGCATTTTTCAACCAAGTCATAGCATTGTCTGAAGCAGGCCTGCTTTTGCTTGCAAATGCGAGAAGGAACGCCATATATTCCGTGCATTTGGACTATGGCTCATCTCCAGTGGAAACGCTGATGGATTACTTGTCCGAGTTTACAGTCACTATGCCTATATTGAGTTTTATTGGGACAAATGATCACCCAGAAGAACCATTTGTTAAAGTGTATTGTGTTCAGACTCTAGCAATCCAGCAGTATACATTAGACTTATTCTTGTGCATGCCACCTCCAAGAGAGAATGTGGGTTTTGAGAAGTCAGATTCTACTGTGTCACGGGAGGCAAACCTTGTTGAAAGCACGTTAGAAACATCTGGAATGAAGCCTACCGAATTACCTTCAGTTGGTTCAGTGCCTAAACCATCTATTTTAGTGAATAGATCGGAAAATGCTAATATGTTGAGTTTTCCAGCGGGCCCTGCATCAGCGGGGATCACACCACCAGCAATTGTTCCACCCAACGGTGAGCCTAAAACTTCTGGGATGCCTTCTGAGACCAGTGATGTAGATTCTGCGTATGCTCCTTCACCTCAACTTCCTCTAAGCCCCAGACTATCAAGTAAACTTTCTGGCTATCACACTCCTGTAGAAGCGTTTGAGCAAGTGCTACCACATCATAAGCTTGGTGGCAAAACAAGTTCTGCTGATTATTTTTATGTGAGGCAAACTGATGATGTTGGAGGAAGAAATTTGGATGTGTCTTCTGTCGAGGAAAACTGTAGAAGCAAGGACACGAATGTTACACCTGATGATGATGTGTCTGGGATTCGAAGCCCGTCAGCTTTTTTCAAACAGCCCACTCATCTCGTAACTCCTTCAGAGATATTGATGGGCGTTTCTTCCACTGAAGCCTCCATTACTACTGAAGACAAGAGGGATAGAGATGCAAATATTGAGGAAGTGAATAATGATGCAAGAGGCTTAGAAGTTGAGTTGAAAGAAGTAGGCGAAGCACAGACTTCGCAGAATGGTGAAATTAACTATCACGAAACAACTGAGAATCACACTTCAGAAAGTAGAGAAAATATCTTCTGCTCACAGGCTTCAAATCTCAGCACTGAGATGGCAAGAGACCGTCATCCTATTACAGAGGGAAGTGCCATTCCTGGGGATTCTATGGCTTATGGACAACCTTTACAAGCTGGAGATGAAAGGGGTCTTGACTCAAGAGATGTCTCTGCAAAGCTTCCTGAGTCGGGTTCATCTAGTGGGTTAGTAGCTACAAATAGCAAAGGAAAGAAGCAGAAGGCGAAAAATTCACAGGGTCCTGGGTTGTCATCTACATCCTCAAATGTTGCTAATCTGGCTGACTCCTTCAATGAGCAAAGTCAGAGTTTAAATCATCCCATGGCAGATTTACTTCCTCAGTTGTTAGCATTGCAAGAAACAATGACTCAGGTAATGGCTTCGCAGAAGGAGATGCAGAGACAACTATCAAATGCTGTCACTGGCCCTATCGTAAAAGAAGGTAAAAAACTAGAAGTTGCCTTAGGGAGAATGATTGAGAAATCCAGCAAGTCAAATGCTGATGCTCTATGGGCCCACTTCCAAGAGGAGGCTGTTAAGAATGAAAAGGCATTACGTGACCATGGCCAGCAAATTATGAATGAAACGACAAACTTCACGAGTAAAGAGTTAAATGCCATGTTTGAGAAAACGATGAAGAAGGAATTTGCTTCAGTTGGTCCAACCCTAGCACGTGTAGTAACTCCAGTTATTGAAAAAACTGTATCTTCTGCAATCACAGAGTCCTTCCAGAGAGGAATTGGTGACAAAGCAGTCAATCAGCTTGAAAAATCTGTTAATTCAAAGCTTGAAACAACCGTAGCCAGGCAGATTCAAGCCCAATTTCAGACATCTGGCAGACAAGTCCTGCAGGAAGGTCTTAGGTCAAGTATGGAGTCCTCAGTCATACCTTCCTTTGAGAGGTCATGCAAAACCATGTTTGAGCAAGTAGACTCAACCTTACAGAAAGGAATTGGTAAGCACACGAGCGCAACACAGCAACGGATTGACTCTGGACAATCTCAGCTTGCTCATACTCTGAGGGAAACCATTAGTTCTGCATCATCAGTTACTCAAGCCCTAAATCGTGAATTAGCCGAGAGTCAAAGGAATCGCTTAGCTCTCACAGCTGCTGGATCAAATCCCTTGGTTACTCAACTAAGTAACGGGCCTTTAGGTGCTCTTCTTGAAAAGGTTGAAGCACCTATGGACCCAACAACAGAGCTATCAAGGTTGATATCTGAACGCAAGTACGAAGAATCTTTCACATCAGCTCTACAAAGAAGCGATGTCTCTATAGTATCATGGCTTTGCTCACAGGTGGATCTTCGTGGACTACTGGCGATGAATCCGCTTCCGCTGAGCCAAGGTGTGCTTCTTTCACTGCTGCAGCAGTTAGCTTGTGACATAAGCACGGACACATCCCGTAAGCTAGGTTGGATGACTGATGTGGTTACAGCCATAAACCCATCAGATCAGATGATAGCGGTCCATGCTCGCCCAATCTTTGAACAAGTTTATCAGATTTTGCACCATCACCGTAACGCACCAGGCAGCGACGTCTCTGCCGTCAGACTAATAATGCACGTCATCAACTCTTTACTTATGAGCTGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

1340

Amino Acids

145.88

Weight (kDa)

5.75

Isoelectric Point (pI)

49.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ge1_WD40 PF16529 170 - 482 2.1e-21 WD40 region of Ge1, enhancer of mRNA-decapping protein
Beta-prop_WDR3_1st PF25173 191 - 255 3.9e-06 WDR3 first beta-propeller domain
WD40_WDHD1_1st PF24817 194 - 306 8.2e-09 WDHD1 first WD40 domain
EDC4_C PF21289 1212 - 1315 4.7e-18 Enhancer of mRNA-decapping protein 4, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1036, 3176
AatII GACGTC 1 cut(s) 3966
AccB1I GGYRCC 2 cut(s) 329, 958
AccI GTMKAC 3 cut(s) 579, 1598, 3354
AccII CGCG 2 cut(s) 140, 1063
AclWI GGATC 6 cut(s) 530, 543, 769, 1838, 3547, 3735
AcoI YGGCCR 2 cut(s) 655, 2989
AcsI RAATTY 5 cut(s) 750, 876, 2086, 2653, 3068
AcuI CTGAAG 9 cut(s) 797, 1062, 1407, 1722, 2199, 2265, 2283, 2391, 3060
AcvI CACGTG 2 cut(s) 848, 3098
AcyI GRCGYC 2 cut(s) 5, 3963
AfaI GTAC 6 cut(s) 58, 122, 527, 549, 1309, 3656
AflIII ACRYGT 3 cut(s) 847, 901, 3097
AhdI GACNNNNNGTC 1 cut(s) 1157
AjiI CACGTC 1 cut(s) 3991
AjnI CCWGG 7 cut(s) 13, 145, 1065, 2503, 2665, 3227, 3952
AjuI GAANNNNNNNTTGG 2 cut(s) 3762, 3794
Alw21I GWGCWC 1 cut(s) 3586
Alw26I GTCTC 9 cut(s) 648, 1132, 1258, 1886, 2463, 2578, 2818, 3700, 3970
AlwI GGATC 6 cut(s) 530, 543, 769, 1838, 3547, 3735
AlwNI CAGNNNCTG 1 cut(s) 3536
Ama87I CYCGRG 1 cut(s) 372
AoxI GGCC 7 cut(s) 655, 1393, 1813, 2848, 2937, 2989, 3572
ApaI GGGCCC 2 cut(s) 1817, 2941
ApeKI GCWGC 7 cut(s) 499, 907, 3533, 3790, 3793, 3957, 4014
ApoI RAATTY 5 cut(s) 750, 876, 2086, 2653, 3068
ArsI GACNNNNNNTTYG 2 cut(s) 1306, 1338
Asp700I GAANNNNTTC 1 cut(s) 699
AspLEI GCGC 3 cut(s) 142, 1065, 3395
AsuC2I CCSGG 3 cut(s) 294, 384, 1187
AsuII TTCGAA 1 cut(s) 2167
AvaI CYCGRG 1 cut(s) 372
AvaII GGWCC 7 cut(s) 101, 395, 1223, 2663, 3083, 3613, 3892
AxyI CCTNAGG 1 cut(s) 2887
BaeGI GKGCMC 2 cut(s) 1817, 2941
BalI TGGCCA 2 cut(s) 657, 2991
BamHI GGATCC 1 cut(s) 535
BanI GGYRCC 2 cut(s) 329, 958
BanII GRGCYC 2 cut(s) 1817, 2941
BauI CACGAG 2 cut(s) 3022, 3388
BbrPI CACGTG 2 cut(s) 848, 3098
BbsI GAAGAC 4 cut(s) 189, 837, 2091, 2271
Bbv12I GWGCWC 1 cut(s) 3586
BbvCI CCTCAGC 1 cut(s) 540
BbvI GCAGC 7 cut(s) 511, 894, 3520, 3777, 3805, 3969, 4001
BceAI ACGGC 5 cut(s) 28, 317, 334, 544, 3956
BcgI CGANNNNNNTGC 4 cut(s) 2340, 2374, 3950, 3984
BciT130I CCWGG 7 cut(s) 15, 147, 1067, 2505, 2667, 3229, 3954
BclI TGATCA 2 cut(s) 1198, 1537
BcnI CCSGG 3 cut(s) 294, 384, 1187
BcoDI GTCTC 9 cut(s) 648, 1132, 1258, 1886, 2463, 2578, 2818, 3700, 3970
BfaI CTAG 7 cut(s) 714, 725, 1583, 2604, 2876, 3092, 3836
BfmI CTRYAG 6 cut(s) 96, 1983, 2116, 3272, 3699, 3791
BisI GCNGC 9 cut(s) 143, 156, 500, 908, 3534, 3791, 3794, 3958, 4015
BlpI GCTNAGC 2 cut(s) 3520, 3764
BlsI GCNGC 9 cut(s) 144, 157, 501, 909, 3535, 3792, 3795, 3959, 4016
Bme18I GGWCC 7 cut(s) 101, 395, 1223, 2663, 3083, 3613, 3892
BmeRI GACNNNNNGTC 1 cut(s) 1157
BmeT110I CYCGRG 1 cut(s) 372
BmgBI CACGTC 1 cut(s) 3991
BmiI GGNNCC 9 cut(s) 331, 396, 537, 960, 1224, 1815, 2664, 2939, 3615
BmsI GCATC 8 cut(s) 364, 1829, 1872, 2272, 2299, 2808, 2917, 3473
BpiI GAAGAC 4 cut(s) 189, 837, 2091, 2271
BpmI CTGGAG 5 cut(s) 524, 950, 1446, 2562, 3093
Bpu10I CCTNAGC 1 cut(s) 540
Bpu1102I GCTNAGC 2 cut(s) 3520, 3764
Bpu14I TTCGAA 1 cut(s) 2167
BpuEI CTTGAG 2 cut(s) 2548, 3462
BpuMI CCSGG 3 cut(s) 294, 384, 1187
Bsa29I ATCGAT 1 cut(s) 915
BsaAI YACGTR 3 cut(s) 848, 2981, 3098
BsaBI GATNNNNATC 1 cut(s) 702
BsaHI GRCGYC 2 cut(s) 5, 3963
BsaI GGTCTC 5 cut(s) 648, 1132, 1258, 1886, 2463
BsaWI WCCGGW 1 cut(s) 169
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
Bse1I ACTGG 9 cut(s) 118, 796, 967, 1157, 1463, 1896, 2851, 3110, 3747
Bse21I CCTNAGG 1 cut(s) 2887
Bse3DI GCAATG 1 cut(s) 2774
Bse8I GATNNNNATC 1 cut(s) 702
BseBI CCWGG 7 cut(s) 15, 147, 1067, 2505, 2667, 3229, 3954
BseCI ATCGAT 1 cut(s) 915
BseJI GATNNNNATC 1 cut(s) 702
BseMI GCAATG 1 cut(s) 2774
BseNI ACTGG 9 cut(s) 118, 796, 967, 1157, 1463, 1896, 2851, 3110, 3747
BseRI GAGGAG 2 cut(s) 305, 2966
BseSI GKGCMC 2 cut(s) 1817, 2941
BseXI GCAGC 7 cut(s) 511, 894, 3520, 3777, 3805, 3969, 4001
BseYI CCCAGC 1 cut(s) 1259
Bsh1236I CGCG 2 cut(s) 140, 1063
BshFI GGCC 7 cut(s) 657, 1395, 1815, 2850, 2939, 2991, 3574
BshNI GGYRCC 2 cut(s) 329, 958
BshVI ATCGAT 1 cut(s) 915
BsiHKAI GWGCWC 1 cut(s) 3586
BsiHKCI CYCGRG 1 cut(s) 372
BsiSI CCGG 4 cut(s) 170, 293, 384, 1187
BslFI GGGAC 1 cut(s) 1543
BsmAI GTCTC 9 cut(s) 648, 1132, 1258, 1886, 2463, 2578, 2818, 3700, 3970
BsmBI CGTCTC 1 cut(s) 3970
BsmFI GGGAC 1 cut(s) 1543
BsmI GAATGC 1 cut(s) 609
BsnI GGCC 7 cut(s) 657, 1395, 1815, 2850, 2939, 2991, 3574
Bso31I GGTCTC 5 cut(s) 648, 1132, 1258, 1886, 2463
BsoBI CYCGRG 1 cut(s) 372
Bsp119I TTCGAA 1 cut(s) 2167
Bsp120I GGGCCC 2 cut(s) 1813, 2937
Bsp1286I GDGCHC 3 cut(s) 1817, 2941, 3586
Bsp1720I GCTNAGC 2 cut(s) 3520, 3764
Bsp19I CCATGG 2 cut(s) 2745, 2986
BspANI GGCC 7 cut(s) 657, 1395, 1815, 2850, 2939, 2991, 3574
BspDI ATCGAT 1 cut(s) 915
BspFNI CGCG 2 cut(s) 140, 1063
BspHI TCATGA 1 cut(s) 1144
BspLI GGNNCC 9 cut(s) 331, 396, 537, 960, 1224, 1815, 2664, 2939, 3615
BspMAI CTGCAG 2 cut(s) 3276, 3795
BspPI GGATC 6 cut(s) 530, 543, 769, 1838, 3547, 3735
BspQI GCTCTTC 2 cut(s) 816, 3591
BspT104I TTCGAA 1 cut(s) 2167
BspT107I GGYRCC 2 cut(s) 329, 958
BspTNI GGTCTC 5 cut(s) 648, 1132, 1258, 1886, 2463
BsrDI GCAATG 1 cut(s) 2774
BsrI ACTGG 9 cut(s) 118, 796, 967, 1157, 1463, 1896, 2851, 3110, 3747
BssNAI GTATAC 1 cut(s) 1599
BssNI GRCGYC 2 cut(s) 5, 3963
BssSI CACGAG 2 cut(s) 3022, 3388
BssT1I CCWWGG 5 cut(s) 426, 2745, 2986, 3549, 3769
Bst1107I GTATAC 1 cut(s) 1599
Bst2BI CACGAG 2 cut(s) 3022, 3388
Bst2UI CCWGG 7 cut(s) 15, 147, 1067, 2505, 2667, 3229, 3954
Bst4CI ACNGT 9 cut(s) 1093, 1501, 1669, 1862, 2117, 2474, 3127, 3223, 3944
Bst6I CTCTTC 3 cut(s) 208, 816, 3591
BstACI GRCGYC 2 cut(s) 5, 3963
BstBAI YACGTR 3 cut(s) 848, 2981, 3098
BstBI TTCGAA 1 cut(s) 2167
BstC8I GCNNGC 8 cut(s) 1393, 1397, 1407, 1622, 1813, 2993, 3432, 3901
BstDSI CCRYGG 4 cut(s) 333, 652, 2745, 2986
BstENI CCTNNNNNAGG 1 cut(s) 3322
BstFNI CGCG 2 cut(s) 140, 1063
BstHHI GCGC 3 cut(s) 142, 1065, 3395
BstMAI GTCTC 9 cut(s) 648, 1132, 1258, 1886, 2463, 2578, 2818, 3700, 3970
BstMWI GCNNNNNNNGC 7 cut(s) 689, 1355, 1817, 2702, 2936, 3530, 3896
BstNI CCWGG 7 cut(s) 15, 147, 1067, 2505, 2667, 3229, 3954
BstNSI RCATGY 3 cut(s) 455, 905, 1624
BstSFI CTRYAG 6 cut(s) 96, 1983, 2116, 3272, 3699, 3791
BstSLI GKGCMC 2 cut(s) 1817, 2941
BstUI CGCG 2 cut(s) 140, 1063
BstV1I GCAGC 7 cut(s) 511, 894, 3520, 3777, 3805, 3969, 4001
BstV2I GAAGAC 4 cut(s) 189, 837, 2091, 2271
BstX2I RGATCY 3 cut(s) 535, 761, 3727
BstXI CCANNNNNNTGG 2 cut(s) 791, 1066
BstYI RGATCY 3 cut(s) 535, 761, 3727
BstZ17I GTATAC 1 cut(s) 1599
Bsu15I ATCGAT 1 cut(s) 915
Bsu36I CCTNAGG 1 cut(s) 2887
BsuRI GGCC 7 cut(s) 657, 1395, 1815, 2850, 2939, 2991, 3574
BsuTUI ATCGAT 1 cut(s) 915
BtgI CCRYGG 4 cut(s) 333, 652, 2745, 2986
BtgZI GCGATG 2 cut(s) 3705, 3761
BtrI CACGTC 1 cut(s) 3991
BtsI GCAGTG 2 cut(s) 859, 3785
BtsIMutI CAGTG 9 cut(s) 859, 974, 1470, 1755, 1903, 2241, 2454, 2844, 3785
Cac8I GCNNGC 8 cut(s) 1393, 1397, 1407, 1622, 1813, 2993, 3432, 3901
CaiI CAGNNNCTG 1 cut(s) 3536
CciI TCATGA 1 cut(s) 1144
CfoI GCGC 3 cut(s) 142, 1065, 3395
ClaI ATCGAT 1 cut(s) 915
CsiI ACCWGGT 1 cut(s) 13
Csp6I GTAC 6 cut(s) 57, 121, 526, 548, 1308, 3655
CviQI GTAC 6 cut(s) 57, 121, 526, 548, 1308, 3655
DraI TTTAAA 1 cut(s) 2736
DrdI GACNNNNNNGTC 2 cut(s) 1036, 3176
DriI GACNNNNNGTC 1 cut(s) 1157
DseDI GACNNNNNNGTC 2 cut(s) 1036, 3176
EaeI YGGCCR 2 cut(s) 655, 2989
Eam1104I CTCTTC 3 cut(s) 208, 816, 3591
Eam1105I GACNNNNNGTC 1 cut(s) 1157
EarI CTCTTC 3 cut(s) 208, 816, 3591
EciI GGCGGA 1 cut(s) 30
Eco130I CCWWGG 5 cut(s) 426, 2745, 2986, 3549, 3769
Eco147I AGGCCT 1 cut(s) 1395
Eco24I GRGCYC 2 cut(s) 1817, 2941
Eco31I GGTCTC 5 cut(s) 648, 1132, 1258, 1886, 2463
Eco32I GATATC 1 cut(s) 3642
Eco47I GGWCC 7 cut(s) 101, 395, 1223, 2663, 3083, 3613, 3892
Eco57I CTGAAG 9 cut(s) 797, 1062, 1407, 1722, 2199, 2265, 2283, 2391, 3060
Eco72I CACGTG 2 cut(s) 848, 3098
Eco81I CCTNAGG 1 cut(s) 2887
Eco88I CYCGRG 1 cut(s) 372
EcoNI CCTNNNNNAGG 1 cut(s) 3322
EcoO109I RGGNCCY 4 cut(s) 395, 1223, 1814, 2663
EcoRII CCWGG 7 cut(s) 13, 145, 1065, 2503, 2665, 3227, 3952
EcoRV GATATC 1 cut(s) 3642
EcoT14I CCWWGG 5 cut(s) 426, 2745, 2986, 3549, 3769
EcoT38I GRGCYC 2 cut(s) 1817, 2941
ErhI CCWWGG 5 cut(s) 426, 2745, 2986, 3549, 3769
Esp3I CGTCTC 1 cut(s) 3970
FalI AAGNNNNNCTT 4 cut(s) 1260, 1292, 3762, 3794
FaqI GGGAC 1 cut(s) 1543
FauI CCCGC 3 cut(s) 1291, 1804, 1819
FbaI TGATCA 2 cut(s) 1198, 1537
FblI GTMKAC 3 cut(s) 579, 1598, 3354
Fnu4HI GCNGC 9 cut(s) 143, 156, 500, 908, 3534, 3791, 3794, 3958, 4015
FriOI GRGCYC 2 cut(s) 1817, 2941
Fsp4HI GCNGC 9 cut(s) 143, 156, 500, 908, 3534, 3791, 3794, 3958, 4015
FspBI CTAG 7 cut(s) 714, 725, 1583, 2604, 2876, 3092, 3836
GlaI GCGC 3 cut(s) 141, 1064, 3394
GluI GCNGC 9 cut(s) 143, 156, 500, 908, 3534, 3791, 3794, 3958, 4015
GsaI CCCAGC 1 cut(s) 1263
GsuI CTGGAG 5 cut(s) 524, 950, 1446, 2562, 3093
HaeIII GGCC 7 cut(s) 657, 1395, 1815, 2850, 2939, 2991, 3574
HapII CCGG 4 cut(s) 170, 293, 384, 1187
HhaI GCGC 3 cut(s) 142, 1065, 3395
Hin1I GRCGYC 2 cut(s) 5, 3963
Hin6I GCGC 3 cut(s) 140, 1063, 3393
HinP1I GCGC 3 cut(s) 140, 1063, 3393
HindIII AAGCTT 3 cut(s) 2018, 2582, 3209
HpaII CCGG 4 cut(s) 170, 293, 384, 1187
Hpy166II GTNNAC 8 cut(s) 449, 580, 899, 1497, 1599, 1961, 3355, 3737
Hpy8I GTNNAC 8 cut(s) 449, 580, 899, 1497, 1599, 1961, 3355, 3737
Hpy99I CGWCG 2 cut(s) 355, 3965
HpyCH4III ACNGT 9 cut(s) 1093, 1501, 1669, 1862, 2117, 2474, 3127, 3223, 3944
HpyCH4IV ACGT 6 cut(s) 847, 1700, 2980, 3097, 3963, 3990
HpyF10VI GCNNNNNNNGC 7 cut(s) 689, 1355, 1817, 2702, 2936, 3530, 3896
HpySE526I ACGT 6 cut(s) 847, 1700, 2980, 3097, 3963, 3990
Hsp92I GRCGYC 2 cut(s) 5, 3963
HspAI GCGC 3 cut(s) 140, 1063, 3393
Ksp22I TGATCA 2 cut(s) 1198, 1537
LguI GCTCTTC 2 cut(s) 816, 3591
LmnI GCTCC 1 cut(s) 1924
Lsp1109I GCAGC 7 cut(s) 511, 894, 3520, 3777, 3805, 3969, 4001
LweI GCATC 8 cut(s) 364, 1829, 1872, 2272, 2299, 2808, 2917, 3473
MabI ACCWGGT 1 cut(s) 13
MaeI CTAG 7 cut(s) 714, 725, 1583, 2604, 2876, 3092, 3836
MaeII ACGT 6 cut(s) 847, 1700, 2980, 3097, 3963, 3990
MfeI CAATTG 2 cut(s) 891, 1845
MflI RGATCY 3 cut(s) 535, 761, 3727
MhlI GDGCHC 3 cut(s) 1817, 2941, 3586
MlsI TGGCCA 2 cut(s) 657, 2991
MluNI TGGCCA 2 cut(s) 657, 2991
MmeI TCCRAC 4 cut(s) 102, 2056, 3110, 3821
Mox20I TGGCCA 2 cut(s) 657, 2991
MroXI GAANNNNTTC 1 cut(s) 699
MscI TGGCCA 2 cut(s) 657, 2991
MseI TTAA 8 cut(s) 111, 1095, 1560, 2376, 2735, 2961, 3035, 3201
MslI CAYNNNNRTG 3 cut(s) 846, 1175, 2459
Msp20I TGGCCA 2 cut(s) 657, 2991
MspA1I CMGCKG 7 cut(s) 502, 1259, 1286, 1811, 1826, 3533, 3763
MspI CCGG 4 cut(s) 170, 293, 384, 1187
MunI CAATTG 2 cut(s) 891, 1845
Mva1269I GAATGC 1 cut(s) 609
MvaI CCWGG 7 cut(s) 15, 147, 1067, 2505, 2667, 3229, 3954
MvnI CGCG 2 cut(s) 140, 1063
MwoI GCNNNNNNNGC 7 cut(s) 689, 1355, 1817, 2702, 2936, 3530, 3896
NciI CCSGG 3 cut(s) 294, 384, 1187
NcoI CCATGG 2 cut(s) 2745, 2986
NlaIV GGNNCC 9 cut(s) 331, 396, 537, 960, 1224, 1815, 2664, 2939, 3615
NmeAIII GCCGAG 2 cut(s) 979, 3526
NmuCI GTSAC 9 cut(s) 508, 1027, 1177, 1501, 1671, 2842, 2981, 3167, 3806
NspI RCATGY 3 cut(s) 455, 905, 1624
NspV TTCGAA 1 cut(s) 2167
PaeI GCATGC 1 cut(s) 1624
PaeR7I CTCGAG 1 cut(s) 372
PagI TCATGA 1 cut(s) 1144
PceI AGGCCT 1 cut(s) 1395
PciI ACATGT 1 cut(s) 901
PciSI GCTCTTC 2 cut(s) 816, 3591
PcsI WCGNNNNNNNCGW 2 cut(s) 330, 3969
PctI GAATGC 1 cut(s) 609
PdmI GAANNNNTTC 1 cut(s) 699
PfoI TCCNGGA 1 cut(s) 292
PkrI GCNGC 9 cut(s) 144, 157, 501, 909, 3535, 3792, 3795, 3959, 4016
PmaCI CACGTG 2 cut(s) 848, 3098
PmlI CACGTG 2 cut(s) 848, 3098
Ppu21I YACGTR 3 cut(s) 848, 2981, 3098
PpuMI RGGWCCY 3 cut(s) 395, 1223, 2663
PscI ACATGT 1 cut(s) 901
Psp5II RGGWCCY 3 cut(s) 395, 1223, 2663
Psp6I CCWGG 7 cut(s) 13, 145, 1065, 2503, 2665, 3227, 3952
PspCI CACGTG 2 cut(s) 848, 3098
PspFI CCCAGC 1 cut(s) 1259
PspGI CCWGG 7 cut(s) 13, 145, 1065, 2503, 2665, 3227, 3952
PspN4I GGNNCC 9 cut(s) 331, 396, 537, 960, 1224, 1815, 2664, 2939, 3615
PspOMI GGGCCC 2 cut(s) 1813, 2937
PspPPI RGGWCCY 3 cut(s) 395, 1223, 2663
PspXI VCTCGAGB 1 cut(s) 372
PstI CTGCAG 2 cut(s) 3276, 3795
PstNI CAGNNNCTG 1 cut(s) 3536
PsuI RGATCY 3 cut(s) 535, 761, 3727
PvuII CAGCTG 2 cut(s) 502, 3533
RsaI GTAC 6 cut(s) 58, 122, 527, 549, 1309, 3656
RsaNI GTAC 6 cut(s) 57, 121, 526, 548, 1308, 3655
RseI CAYNNNNRTG 3 cut(s) 846, 1175, 2459
SapI GCTCTTC 2 cut(s) 816, 3591
SaqAI TTAA 8 cut(s) 111, 1095, 1560, 2376, 2735, 2961, 3035, 3201
SatI GCNGC 9 cut(s) 143, 156, 500, 908, 3534, 3791, 3794, 3958, 4015
SbfI CCTGCAGG 1 cut(s) 3276
SdaI CCTGCAGG 1 cut(s) 3276
SduI GDGCHC 3 cut(s) 1817, 2941, 3586
SexAI ACCWGGT 1 cut(s) 13
SfaNI GCATC 8 cut(s) 364, 1829, 1872, 2272, 2299, 2808, 2917, 3473
SfcI CTRYAG 6 cut(s) 96, 1983, 2116, 3272, 3699, 3791
Sfr274I CTCGAG 1 cut(s) 372
SfuI TTCGAA 1 cut(s) 2167
SinI GGWCC 7 cut(s) 101, 395, 1223, 2663, 3083, 3613, 3892
SlaI CTCGAG 1 cut(s) 372
SmiMI CAYNNNNRTG 3 cut(s) 846, 1175, 2459
SmlI CTYRAG 3 cut(s) 372, 2563, 3477
SmoI CTYRAG 3 cut(s) 372, 2563, 3477
SphI GCATGC 1 cut(s) 1624
Sse8387I CCTGCAGG 1 cut(s) 3276
SseBI AGGCCT 1 cut(s) 1395
SspI AATATT 1 cut(s) 2290
SspMI CTAG 7 cut(s) 714, 725, 1583, 2604, 2876, 3092, 3836
StuI AGGCCT 1 cut(s) 1395
StyI CCWWGG 5 cut(s) 426, 2745, 2986, 3549, 3769
TaaI ACNGT 9 cut(s) 1093, 1501, 1669, 1862, 2117, 2474, 3127, 3223, 3944
TaiI ACGT 6 cut(s) 850, 1703, 2983, 3100, 3966, 3993
TaqI TCGA 6 cut(s) 48, 373, 915, 1234, 2106, 2167
TatI WGTACW 2 cut(s) 120, 547
TauI GCSGC 2 cut(s) 145, 158
Tru1I TTAA 8 cut(s) 111, 1095, 1560, 2376, 2735, 2961, 3035, 3201
Tru9I TTAA 8 cut(s) 111, 1095, 1560, 2376, 2735, 2961, 3035, 3201
TscAI CASTG 9 cut(s) 866, 974, 1470, 1755, 1903, 2248, 2461, 2851, 3792
TseFI GTSAC 9 cut(s) 508, 1027, 1177, 1501, 1671, 2842, 2981, 3167, 3806
TseI GCWGC 7 cut(s) 499, 907, 3533, 3790, 3793, 3957, 4014
Tsp45I GTSAC 9 cut(s) 508, 1027, 1177, 1501, 1671, 2842, 2981, 3167, 3806
TspGWI ACGGA 7 cut(s) 93, 339, 641, 689, 1426, 3421, 3833
TspRI CASTG 9 cut(s) 866, 974, 1470, 1755, 1903, 2248, 2461, 2851, 3792
VpaK11BI GGWCC 7 cut(s) 101, 395, 1223, 2663, 3083, 3613, 3892
XagI CCTNNNNNAGG 1 cut(s) 3322
XapI RAATTY 5 cut(s) 750, 876, 2086, 2653, 3068
XbaI TCTAGA 1 cut(s) 724
XceI RCATGY 3 cut(s) 455, 905, 1624
XcmI CCANNNNNNNNNTGG 2 cut(s) 852, 3161
XhoI CTCGAG 1 cut(s) 372
XmiI GTMKAC 3 cut(s) 579, 1598, 3354
XmnI GAANNNNTTC 1 cut(s) 699
XspI CTAG 7 cut(s) 714, 725, 1583, 2604, 2876, 3092, 3836
ZraI GACGTC 1 cut(s) 3964
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.