FvH4_4g01881

Enhancer of mRNA-decapping protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
1675447 .. 1676225
779 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g01881.t1

Sequence Viewer

Length: 468 bp
ATGGCCATGCAGGATATGATGAATCAGCTAATGAATACGCTAAGAGAATTGCAAAAGCAGATGACAATGTTGGTCACTGTCCCAATTACAGAGGAAGGCGAAAGATTAGGAGAAGAAGCTGAGCATAAAAAGAAGAAAATTGCACAAGATGAAGTATCCATTGTGCTCAATCCTCGTATCATAGTCAAACATCTTCCCCATCCAATAACTCCCTTTGAGATTTTAATGGCTGCTTCTCCCTCTGAAAGTACAAGTACTGTTGACAGCAACAGTGCTTCATTATATGGGCAGCTAATGGAACTGGTTGGTGGTAAACCTGAACTGCTTGAGGGGGATGCGGGAATCCAAGATGTGCTTGTTAACAGTGGGGTGGGTAATCCTGAGTTAGAAGTCAAAGTTGTGGGGAAGCAGGATCTACCCAAATTGATGAATTTGGCTCCCAACGGGAACTCCAAAATGCTGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

156

Amino Acids

16.93

Weight (kDa)

4.96

Isoelectric Point (pI)

36.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 338
AclWI GGATC 1 cut(s) 420
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 430
AfaI GTAC 2 cut(s) 250, 256
AluBI AGCT 3 cut(s) 28, 119, 292
AluI AGCT 3 cut(s) 28, 119, 292
Alw21I GWGCWC 1 cut(s) 168
AlwI GGATC 1 cut(s) 420
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 230, 289
ApoI RAATTY 1 cut(s) 430
BalI TGGCCA 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 2 cut(s) 217, 301
BccI CCATC 1 cut(s) 207
BciVI GTATCC 1 cut(s) 166
BfuI GTATCC 1 cut(s) 166
BisI GCNGC 2 cut(s) 231, 290
BlpI GCTNAGC 1 cut(s) 120
BlsI GCNGC 2 cut(s) 232, 291
BmcAI AGTACT 1 cut(s) 256
BmiI GGNNCC 1 cut(s) 438
BmsI GCATC 1 cut(s) 325
Bpu1102I GCTNAGC 1 cut(s) 120
BpuEI CTTGAG 1 cut(s) 347
BsaXI ACNNNNNCTCC 2 cut(s) 434, 464
Bse1I ACTGG 1 cut(s) 306
BseGI GGATG 2 cut(s) 199, 340
BseMII CTCAG 2 cut(s) 111, 372
BseNI ACTGG 1 cut(s) 306
BseXI GCAGC 2 cut(s) 217, 301
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 168
BslFI GGGAC 1 cut(s) 65
BsmFI GGGAC 1 cut(s) 65
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 168
Bsp143I GATC 1 cut(s) 412
Bsp1720I GCTNAGC 1 cut(s) 120
BspACI CCGC 1 cut(s) 338
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 112, 373
BspLI GGNNCC 1 cut(s) 438
BspPI GGATC 1 cut(s) 420
BsrI ACTGG 1 cut(s) 306
BssMI GATC 1 cut(s) 412
Bst4CI ACNGT 4 cut(s) 79, 259, 272, 365
BstDEI CTNAG 3 cut(s) 41, 120, 381
BstF5I GGATG 2 cut(s) 199, 340
BstKTI GATC 1 cut(s) 415
BstMBI GATC 1 cut(s) 412
BstV1I GCAGC 2 cut(s) 217, 301
BstX2I RGATCY 1 cut(s) 412
BstXI CCANNNNNNTGG 1 cut(s) 460
BstYI RGATCY 1 cut(s) 412
BsuI GTATCC 1 cut(s) 166
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 199, 340
BtsIMutI CAGTG 3 cut(s) 75, 277, 370
Csp6I GTAC 2 cut(s) 249, 255
CviAII CATG 1 cut(s) 7
CviJI RGCY 6 cut(s) 5, 28, 119, 230, 292, 437
CviKI_1 RGCY 6 cut(s) 5, 28, 119, 230, 292, 437
CviQI GTAC 2 cut(s) 249, 255
DdeI CTNAG 3 cut(s) 41, 120, 381
DpnI GATC 1 cut(s) 414
DpnII GATC 1 cut(s) 412
EaeI YGGCCR 1 cut(s) 3
FaeI CATG 1 cut(s) 10
FaiI YATR 6 cut(s) 8, 17, 126, 182, 283, 285
FalI AAGNNNNNCTT 2 cut(s) 339, 371
FaqI GGGAC 1 cut(s) 65
FatI CATG 1 cut(s) 6
FauI CCCGC 1 cut(s) 331
Fnu4HI GCNGC 2 cut(s) 231, 290
FokI GGATG 2 cut(s) 186, 347
Fsp4HI GCNGC 2 cut(s) 231, 290
GluI GCNGC 2 cut(s) 231, 290
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 10
HincII GTYRAC 2 cut(s) 262, 361
HindII GTYRAC 2 cut(s) 262, 361
HinfI GANTC 2 cut(s) 22, 342
HpaI GTTAAC 1 cut(s) 361
Hpy166II GTNNAC 3 cut(s) 262, 314, 361
Hpy188I TCNGA 1 cut(s) 244
Hpy188III TCNNGA 1 cut(s) 380
Hpy8I GTNNAC 3 cut(s) 262, 314, 361
HpyAV CCTTC 1 cut(s) 89
HpyCH4III ACNGT 4 cut(s) 79, 259, 272, 365
HpyCH4V TGCA 3 cut(s) 10, 52, 143
HpyF3I CTNAG 3 cut(s) 41, 120, 381
Hsp92II CATG 1 cut(s) 10
KspAI GTTAAC 1 cut(s) 361
Kzo9I GATC 1 cut(s) 412
LmnI GCTCC 1 cut(s) 442
LpnPI CCDG 5 cut(s) 287, 330, 393, 395, 446
Lsp1109I GCAGC 2 cut(s) 217, 301
LweI GCATC 1 cut(s) 325
MaeIII GTNAC 1 cut(s) 73
MalI GATC 1 cut(s) 414
MboI GATC 1 cut(s) 412
MboII GAAGA 3 cut(s) 125, 145, 185
MflI RGATCY 1 cut(s) 412
MhlI GDGCHC 1 cut(s) 168
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 47, 84, 138, 422, 430
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 4 cut(s) 85, 183, 250, 322
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 224, 360, 466
Msp20I TGGCCA 1 cut(s) 5
NdeII GATC 1 cut(s) 412
NlaIII CATG 1 cut(s) 10
NlaIV GGNNCC 1 cut(s) 438
NmuCI GTSAC 1 cut(s) 73
PfeI GAWTC 2 cut(s) 22, 342
PkrI GCNGC 2 cut(s) 232, 291
PspN4I GGNNCC 1 cut(s) 438
PsuI RGATCY 1 cut(s) 412
RsaI GTAC 2 cut(s) 250, 256
RsaNI GTAC 2 cut(s) 249, 255
SaqAI TTAA 3 cut(s) 224, 360, 466
SatI GCNGC 2 cut(s) 231, 290
Sau3AI GATC 1 cut(s) 412
ScaI AGTACT 1 cut(s) 256
SduI GDGCHC 1 cut(s) 168
SetI ASST 4 cut(s) 30, 121, 294, 319
SfaNI GCATC 1 cut(s) 325
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 5 cut(s) 47, 84, 138, 422, 430
SsiI CCGC 1 cut(s) 338
TaaI ACNGT 4 cut(s) 79, 259, 272, 365
TasI AATT 5 cut(s) 47, 84, 138, 422, 430
TatI WGTACW 2 cut(s) 248, 254
TfiI GAWTC 2 cut(s) 22, 342
Tru1I TTAA 3 cut(s) 224, 360, 466
Tru9I TTAA 3 cut(s) 224, 360, 466
TscAI CASTG 3 cut(s) 82, 277, 370
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 2 cut(s) 230, 289
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 5 cut(s) 35, 47, 165, 267, 443
TspRI CASTG 3 cut(s) 82, 277, 370
XapI RAATTY 1 cut(s) 430
ZrmI AGTACT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.