FvH4_3g42790

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000324
Physical Location & Seq
Forward (+)
35748347 .. 35750849
2503 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g42790.t1

Sequence Viewer

Length: 948 bp
ATGCAGGATGAGATGAATCAGCTGGAGATTATGCAAACAAAATTGCAAACAGAATTGCAAGAGTGGAAGAAGGCTAGAAAGGACAATACTGATGCTCTGCAGGCTCGGGTTAGAGAAGAGATTTCAAAGATTGAGAAATTATGGCGAGAACGTATTCAACAAGGAACTGTAGAACGCACGGACTTTCCGGTCTTGTTAGATAAAATGGTGAAAAAAGAAATAGCTGCTCTTGGATCAGCTATAGAAACAAAAATTATTTTGGCTATATCTGATTGCTTTCAGAAATTGGAGAAATCAGTCAACTCAAATCTTGAAGATACTGTACGCAGTGTGCTGCAGAAATTGGAGGAATCAGTCAACTCAAATATTGAAGCTACTGTACGCAGCCAAATCCAGTTGGATTGTCAAACTCTGGGTAACCAAGCTCGGCAAGGTGATGGTGCCAGCATGTCTGAACCACTTGCTCAGCTTCATTATGTAGAGGAAGATCAGGAACATTCTGGAAAAGATGTATCTGGGTCGGCTACTGCCACAACCACGTCGCAACTACAAACACCAAATGCAATGTCAAGAAAACAGGAATGGAAGAATATGCAAGCATCATGTCCATCTTCCCCGTCACCAGGTGTGCTCAACTCAGTAGAGTCCTCCAATGAAGCAGGTGGGAGTTCAAGTCCCCCCTCTGGAGAAGCTGCAGTCCCTCACATTATGTCCATGCAGGCTATAATGAATAAGATATTGGAAATACAAAGAGAAGAATATCTATGGCATATTAAAGAGGCAGCTGTCATTAATGAGGAAATGAAAAGATTAGAAGAAGAAGAAGCTGAGCATAAAAAGAAGAAGGAAGAATCTAAGCATGAAAAGAAGAAGAAAATTGCACAAGACGACGAAGTATCTAGTGTGCTCAATCTTCCTATCATGTTCAAATATCCAACCATCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

316

Amino Acids

35.53

Weight (kDa)

5.26

Isoelectric Point (pI)

68.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 650
AasI GACNNNNNNGTC 1 cut(s) 188
Acc36I ACCTGC 1 cut(s) 650
AccB1I GGYRCC 1 cut(s) 440
AclWI GGATC 1 cut(s) 241
AdeI CACNNNGTG 1 cut(s) 626
AfaI GTAC 2 cut(s) 324, 381
AfiI CCNNNNNNNGG 2 cut(s) 623, 683
AgsI TTSAA 6 cut(s) 126, 158, 314, 371, 672, 928
AjiI CACGTC 1 cut(s) 540
AjnI CCWGG 1 cut(s) 622
AjuI GAANNNNNNNTTGG 2 cut(s) 722, 754
AluBI AGCT 9 cut(s) 22, 224, 239, 374, 425, 469, 692, 785, 827
AluI AGCT 9 cut(s) 22, 224, 239, 374, 425, 469, 692, 785, 827
Alw21I GWGCWC 2 cut(s) 633, 909
AlwI GGATC 1 cut(s) 241
Ama87I CYCGRG 1 cut(s) 105
ApeKI GCWGC 5 cut(s) 224, 334, 384, 692, 782
ArsI GACNNNNNNTTYG 2 cut(s) 551, 583
AseI ATTAAT 1 cut(s) 792
Asp700I GAANNNNTTC 1 cut(s) 153
AsuHPI GGTGA 3 cut(s) 220, 446, 612
AvaI CYCGRG 1 cut(s) 105
BanI GGYRCC 1 cut(s) 440
BarI GAAGNNNNNNTAC 4 cut(s) 306, 338, 363, 395
Bbv12I GWGCWC 2 cut(s) 633, 909
BbvI GCAGC 5 cut(s) 211, 321, 396, 679, 794
BccI CCATC 3 cut(s) 431, 616, 947
BciT130I CCWGG 1 cut(s) 624
BfaI CTAG 2 cut(s) 75, 900
BfmI CTRYAG 5 cut(s) 98, 168, 240, 335, 693
BfuAI ACCTGC 1 cut(s) 650
BisI GCNGC 5 cut(s) 225, 335, 385, 693, 783
BlpI GCTNAGC 2 cut(s) 465, 828
BlsI GCNGC 5 cut(s) 226, 336, 386, 694, 784
Bme1390I CCNGG 1 cut(s) 624
BmeT110I CYCGRG 1 cut(s) 105
BmgBI CACGTC 1 cut(s) 540
BmiI GGNNCC 1 cut(s) 442
BmrFI CCNGG 1 cut(s) 624
BmsI GCATC 2 cut(s) 82, 608
BpmI CTGGAG 2 cut(s) 44, 705
Bpu1102I GCTNAGC 2 cut(s) 465, 828
BsaWI WCCGGW 1 cut(s) 187
BsaXI ACNNNNNCTCC 2 cut(s) 658, 688
Bsc4I CCNNNNNNNGG 2 cut(s) 623, 683
Bse1I ACTGG 1 cut(s) 394
Bse3DI GCAATG 1 cut(s) 570
BseBI CCWGG 1 cut(s) 624
BseGI GGATG 2 cut(s) 13, 939
BseLI CCNNNNNNNGG 2 cut(s) 623, 683
BseMI GCAATG 1 cut(s) 570
BseMII CTCAG 3 cut(s) 479, 651, 819
BseNI ACTGG 1 cut(s) 394
BseXI GCAGC 5 cut(s) 211, 321, 396, 679, 794
BshNI GGYRCC 1 cut(s) 440
BsiHKAI GWGCWC 2 cut(s) 633, 909
BsiHKCI CYCGRG 1 cut(s) 105
BsiSI CCGG 1 cut(s) 188
BslFI GGGAC 2 cut(s) 660, 683
BslI CCNNNNNNNGG 2 cut(s) 623, 683
BsmFI GGGAC 2 cut(s) 660, 683
BsoBI CYCGRG 1 cut(s) 105
Bsp1286I GDGCHC 2 cut(s) 633, 909
Bsp143I GATC 2 cut(s) 233, 487
Bsp1720I GCTNAGC 2 cut(s) 465, 828
BspCNI CTCAG 3 cut(s) 478, 650, 820
BspLI GGNNCC 1 cut(s) 442
BspMAI CTGCAG 3 cut(s) 102, 339, 697
BspMI ACCTGC 1 cut(s) 650
BspPI GGATC 1 cut(s) 241
BspT107I GGYRCC 1 cut(s) 440
BsrDI GCAATG 1 cut(s) 570
BsrI ACTGG 1 cut(s) 394
BssMI GATC 2 cut(s) 233, 487
Bst2UI CCWGG 1 cut(s) 624
Bst4CI ACNGT 3 cut(s) 169, 322, 379
Bst6I CTCTTC 1 cut(s) 111
BstC8I GCNNGC 4 cut(s) 102, 445, 597, 720
BstDEI CTNAG 4 cut(s) 465, 637, 828, 855
BstEII GGTNACC 1 cut(s) 416
BstF5I GGATG 2 cut(s) 13, 939
BstKTI GATC 2 cut(s) 236, 490
BstMBI GATC 2 cut(s) 233, 487
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNI CCWGG 1 cut(s) 624
BstNSI RCATGY 1 cut(s) 451
BstPI GGTNACC 1 cut(s) 416
BstSCI CCNGG 1 cut(s) 622
BstSFI CTRYAG 5 cut(s) 98, 168, 240, 335, 693
BstV1I GCAGC 5 cut(s) 211, 321, 396, 679, 794
BtrI CACGTC 1 cut(s) 540
BtsCI GGATG 2 cut(s) 13, 939
BtsI GCAGTG 1 cut(s) 334
BtsIMutI CAGTG 1 cut(s) 334
BveI ACCTGC 1 cut(s) 650
Cac8I GCNNGC 4 cut(s) 102, 445, 597, 720
CsiI ACCWGGT 1 cut(s) 622
Csp6I GTAC 2 cut(s) 323, 380
CviAII CATG 5 cut(s) 448, 603, 715, 860, 922
CviQI GTAC 2 cut(s) 323, 380
DdeI CTNAG 4 cut(s) 465, 637, 828, 855
DpnI GATC 2 cut(s) 235, 489
DpnII GATC 2 cut(s) 233, 487
DraIII CACNNNGTG 1 cut(s) 626
DrdI GACNNNNNNGTC 1 cut(s) 188
DseDI GACNNNNNNGTC 1 cut(s) 188
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco88I CYCGRG 1 cut(s) 105
Eco91I GGTNACC 1 cut(s) 416
EcoO65I GGTNACC 1 cut(s) 416
EcoRII CCWGG 1 cut(s) 622
FaeI CATG 5 cut(s) 451, 606, 718, 863, 925
FaqI GGGAC 2 cut(s) 660, 683
FatI CATG 5 cut(s) 447, 602, 714, 859, 921
Fnu4HI GCNGC 5 cut(s) 225, 335, 385, 693, 783
FokI GGATG 2 cut(s) 20, 926
Fsp4HI GCNGC 5 cut(s) 225, 335, 385, 693, 783
FspBI CTAG 2 cut(s) 75, 900
GluI GCNGC 5 cut(s) 225, 335, 385, 693, 783
GsuI CTGGAG 2 cut(s) 44, 705
HapII CCGG 1 cut(s) 188
Hin1II CATG 5 cut(s) 451, 606, 718, 863, 925
HincII GTYRAC 2 cut(s) 301, 358
HindII GTYRAC 2 cut(s) 301, 358
HinfI GANTC 4 cut(s) 16, 350, 644, 851
HpaII CCGG 1 cut(s) 188
HphI GGTGA 3 cut(s) 220, 446, 612
Hpy166II GTNNAC 2 cut(s) 301, 358
Hpy188I TCNGA 3 cut(s) 271, 282, 454
Hpy188III TCNNGA 5 cut(s) 311, 491, 501, 570, 684
Hpy8I GTNNAC 2 cut(s) 301, 358
Hpy99I CGWCG 2 cut(s) 544, 893
HpyAV CCTTC 2 cut(s) 64, 838
HpyCH4III ACNGT 3 cut(s) 169, 322, 379
HpyCH4IV ACGT 2 cut(s) 151, 539
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 4 cut(s) 465, 637, 828, 855
HpySE526I ACGT 2 cut(s) 151, 539
Hsp92II CATG 5 cut(s) 451, 606, 718, 863, 925
Kzo9I GATC 2 cut(s) 233, 487
Lsp1109I GCAGC 5 cut(s) 211, 321, 396, 679, 794
LweI GCATC 2 cut(s) 82, 608
MabI ACCWGGT 1 cut(s) 622
MaeI CTAG 2 cut(s) 75, 900
MaeII ACGT 2 cut(s) 151, 539
MaeIII GTNAC 2 cut(s) 416, 618
MalI GATC 2 cut(s) 235, 489
MboI GATC 2 cut(s) 233, 487
MhlI GDGCHC 2 cut(s) 633, 909
MluCI AATT 7 cut(s) 41, 53, 137, 252, 284, 341, 876
MlyI GAGTC 1 cut(s) 653
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 7 cut(s) 340, 475, 658, 691, 711, 772, 790
MroXI GAANNNNTTC 1 cut(s) 153
MseI TTAA 2 cut(s) 774, 792
MspA1I CMGCKG 2 cut(s) 22, 785
MspI CCGG 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 624
MvaI CCWGG 1 cut(s) 624
MwoI GCNNNNNNNGC 1 cut(s) 101
NdeII GATC 2 cut(s) 233, 487
NlaIII CATG 5 cut(s) 451, 606, 718, 863, 925
NlaIV GGNNCC 1 cut(s) 442
NmeAIII GCCGAG 1 cut(s) 406
NmuCI GTSAC 1 cut(s) 618
NspI RCATGY 1 cut(s) 451
PaqCI CACCTGC 1 cut(s) 650
PdmI GAANNNNTTC 1 cut(s) 153
PfeI GAWTC 3 cut(s) 16, 350, 851
PkrI GCNGC 5 cut(s) 226, 336, 386, 694, 784
PleI GAGTC 1 cut(s) 652
PpsI GAGTC 1 cut(s) 652
PshBI ATTAAT 1 cut(s) 792
Psp6I CCWGG 1 cut(s) 622
PspEI GGTNACC 1 cut(s) 416
PspGI CCWGG 1 cut(s) 622
PspN4I GGNNCC 1 cut(s) 442
PstI CTGCAG 3 cut(s) 102, 339, 697
PvuII CAGCTG 2 cut(s) 22, 785
RsaI GTAC 2 cut(s) 324, 381
RsaNI GTAC 2 cut(s) 323, 380
SaqAI TTAA 2 cut(s) 774, 792
SatI GCNGC 5 cut(s) 225, 335, 385, 693, 783
Sau3AI GATC 2 cut(s) 233, 487
SchI GAGTC 1 cut(s) 653
ScrFI CCNGG 1 cut(s) 624
SduI GDGCHC 2 cut(s) 633, 909
SexAI ACCWGGT 1 cut(s) 622
SfaNI GCATC 2 cut(s) 82, 608
SfcI CTRYAG 5 cut(s) 98, 168, 240, 335, 693
Sse9I AATT 7 cut(s) 41, 53, 137, 252, 284, 341, 876
SspI AATATT 1 cut(s) 367
SspMI CTAG 2 cut(s) 75, 900
StyD4I CCNGG 1 cut(s) 622
TaaI ACNGT 3 cut(s) 169, 322, 379
TaiI ACGT 2 cut(s) 154, 542
TasI AATT 7 cut(s) 41, 53, 137, 252, 284, 341, 876
TfiI GAWTC 3 cut(s) 16, 350, 851
Tru1I TTAA 2 cut(s) 774, 792
Tru9I TTAA 2 cut(s) 774, 792
TscAI CASTG 1 cut(s) 334
TseFI GTSAC 1 cut(s) 618
TseI GCWGC 5 cut(s) 224, 334, 384, 692, 782
Tsp45I GTSAC 1 cut(s) 618
TspDTI ATGAA 6 cut(s) 29, 461, 669, 743, 818, 876
TspGWI ACGGA 1 cut(s) 194
TspRI CASTG 1 cut(s) 334
VspI ATTAAT 1 cut(s) 792
XceI RCATGY 1 cut(s) 451
XmnI GAANNNNTTC 1 cut(s) 153
XspI CTAG 2 cut(s) 75, 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.