FvH4_3g41980

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000324
Physical Location & Seq
Reverse (-)
35122898 .. 35130968
8071 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g41980.t3

Sequence Viewer

Length: 4167 bp
ATGGCCTCCCCCGGCAACCCTAATACTCCTCCACCTTCGCCGCACCAGCAACAACAGCCCCCTTTCGACATGGCCAAGTTCTTTAAACCCACCACTTCCCCCCAAACCCATCCCCCACAAAACCCTAACCCTAATCTCAACTCCGCCGCCTTCCCTATCCCTCCTTCCTCCTATCCTCCCCCTTCTGGGCCCTACTCCTACCCTCCCCAAACGGCGCCGTTTCACCAGAACCAATTCCATTACCCTCAGCCCCAAATTCCTTACCCTCCTCAAGACCACCATCTCCTCCAGCAGCAGCAGCGCTCCCTCTCCTTCCCCATCCCGCCCCTCCAGCCTCCCGGTAATTACAACATTGCCACCGCCGCCTCCAACCCCGCCGCCTCCGGAAACCCCAATTCCGGCGCCAGGATCATGGCCCTGCTCGGCGCGCCGTCTTCCGGCGTCGAAATGCCGCCGCAGCAGCCGGAGATGTCGGCCCCCGGGATGGTGCCCGTTCTTCCCATGGGGATCCCGCCGTCGCCGTCTCGAATGCCGAGCAATAAGCTGCCGAAAGGGAGGCATTTGATCGGAGATAGTGTGGTTTACGATGTGGATGTTAGGCTGCCCGGGGAGTTTCAGCCGCAGCTGGAAGTTACGCCGATTACGAAGTATGGTTCGGATCCTCAGCTGGTTTTGGGCAGACAAATTGCAGTGAATAAGTCGTATATATGCTATGGATTGAAGCAAGGGAATATTAGGGTTTTGAATATACACACTGCGTTAAGATCTTTGTTTCGAGCTCATACACAGAGGGTCACAGACATGGCTTTCTTCACTGAGGATGTTCACCTTTTGGCTAGTGTGAGTGTAGAAGGACGGCTTTTTGTGTGGAAAATTTCTGAAGGTCCGGATGAAGAAGGTACGCCACAAATCACAGGAAAGATTGTTGTTGCCATTCAAATAGTTGGTGAGGGGGAAGCTGTTCATCCACGAGTTTGTTGGCACTGTTTTAAACAAGAGGTTTTGGTGGTTGGGGTTGGGAAGCGTGTTCTACGAATTGATACTACTAAAGTTGCAAAGGGTGAAGTCCCTTCTGCTGAGGATCCTATCAAATGTCCTGTTGAAAAGCTTATTGATGGGGTCCAGTTTGTTGGTAGACATGATGGAGAGGTGACAGATTTATCAATGTGCCAATGGATGACCACCCGACTGGTTTCTGCTTCTATGGATGGAACAATAAAGATCTGGGAAGATCGCAAGTCACAACCACTTTTAGTACTGAGACCCTATGATGGCCTTCCTGTTTATTCGTCTATATTTGTGACAGCTCCCAACAAACCAGATCACATCATACTTGTAACAGTGGGTCCCCTAAATCGGGAAGTGAAGATCTGGTCCTCAGCAAGTGAAGAAGGCTGGCTGCTTCCTAGTGATGCTGAGTCATGGAAATGTACCCAGACCTTAGAGCTAAAGAGCTCTGCTCAACCTCGAGTTGAGGATGCATTCTTTAATCAAGTCATAGCATTGTCACAAGCTGGCCTTCTTTTACTTGCAAATGCTAAGAAGAATGCCATATATGCTGTGCACATAGACTTTGGTGGTGAGCCAGCAGCTACACGCATGGATTACATAGCAGAATTTACTGTTACAATGCCTATTTTGAGCTTTACGGGGACAAGTATATCTCCTCATGGTGAACAAATCGTTCAGGTTTATTGTGTCCAAACACAAGCCATTCAACAGTATGCTTTGGACTTATCGAAGTGCTTACCTCCCCCGCTGGAGAATTCAGGTTTAGAAAAGACAGATTCCACTGTTTCACATGATGCAATTGAGGCGCTGTCAGCTAATTCAGCACCGAAACCAACCATCCAAGCTACTACTCCTGAAGGTGCAGCTGCCTCGAGGTATCCTCTGCGCACTGGTTCGGTTGATGCTGCCACTTCGAAAGATATTACCACTTCTTCTATAGAATCAAAACCTGTTGCATCGGCACCGGAGATGAATGACGCAGATGTTTTTGTAGCAACAGAACCTCCTCCTTTGAGTCCTCGGTTGTCCGGGAAACTGTCTGGTTTAAGAAGCCCGACAGATAGCACCCATAGTGGTGACCAACAAATTAATGAGTACTCGGTTGACAGGCATATGAATACTGCTCGTTCGAACTTGTCTGATACGCCTGCAGTTGCTGATGATTCAAGGAATGATGAGCAGAAAATTGTACAAGATGAAGTGTCTAGTGTGCTTAATCCTCCTATCATGTTCAAACATCCAACCCATCTGATAACTCCCTCTGAGATTTTAATGGCTGCTTCTTCATCTGAAAATACAAATGCAGTTGACAGCAACACTGATGGGGATGCAAAAGTCCAAGATGTGCTTGTTAACAGTGATGTGGTTAATCCTGAGGTAGAAGTCAAAGTTGTCGGTGAATCAAGATCTACTCAAATTGATGAATTTGGCTCCCAACGAGAACTCCAAAATGCTGTTTCAGAGAATAAGGAGAAGTACTTTTGCTCCCAGGCATCAGATCTTGGAATTGAAATGGCCCGGGATTGCTGTGCAATATCATCAGAATCATTTATAACAGAGGAAGCTCGGCAAGGTGATGGTGCCAGCATGTCTGCACCACTTGCTCAGCCTCATTCCGGAGAGGAGGATCAGGACCAGTCCGCAAAAGATGTATCTGGGTCGTCTGCCGCCACAACCACGTCGCAACTACAAACACCAAATGCAAAGTCGAGAAAACAGAAATGGAAAAATATGCAAGCATCAGGTCCATCTTCCCCATCACTAGGTGTGCTCAACTCAGTAGAGTCCTCCAATGAAGCAGGCGGGAGTTCAAGTGGAGAAGCTGAAGTTCCTCAAATTATGGCCATGCAGGATATGATGAATCAGCTAATGAATATGCAAAGAGAATTGCAAAAACAGATGACAATGATGGTTACAAAGGAAGGAAAAAGATTAGAGGTGGCTATGGGTCGGAGTATGGAGAAGGCTGTAAAGGCCAATAATGATGCTCTGTGGGCTCGGTTTCAAGAAGAGAGTTCAAAAAAAGATGCTCAGTTGGCTCGGCTTCAAGAAGAGATTTCAAAGAGTGAGAAATTATCGCGAGAACGTAGTCAACAAGTAACTGGTGTGATCAATAACTTTGTAAACAAGGACTTTCCAGTCATGTTGAAAAAAGAAATAGCTGCTGCTGGACCAGCTGTCGGCCGTGCAATCACTCCATCTATAGAGAAAACAATACCTTTGGCTATATCTGATTGCTTTCAGAGAGGAGTGGGCGATAAAGCAGTTAATCAATTGGAGAAATCGGTCAACTCAAAACTTGAAGCTACTGTATCCAGGCAAATCCAGACGCAGTTTCAAACTTCGGGTAAACAAGCTATTCAGGATGCTCTCAAGTCTAGCATGGAAGCTTCAGTGGTACCTGCCTTTGAGAAGTCATGTAGAGCCATGTTTGAGCAAGTAGATGCTACATTCCAGAAAGGAATGCTTGAACATACAACTGCCGCTCAGCAGCATTTTGAGTCTGCACATTCACCATTGGCCCATGCTTTAAGGGAAGCTATTAGCTCCGCATCATCAGTGACTCAAACCCTAAGCGGAGAACTGGCTGATGGCCAACGCAAGTTAGTGGCTCTTGCAGCTGGACGGGGAAACTCAAGTGCTGTGAATCCCATAGTCACTCAACTAACCAATGGACCCTTGGGTGGTCTCCACGAGAAGGTTGAAGTGCCTTTGGATCCAACAAAGGAGCTGTCAAGGTTGGTGACTGAACGCAAGTATGAAGAGGCTTTTACAGGTGCTCTGCAAAGAAGTGATGTCGGCATTGTATCATGGTTGTGTGCTCAGTTTGCTTTCAACATTTTCCAGGTTAATCTTCAAAGCATATTGTTGCTGCAACCTGTTCCTCTGAGCCAGGGAGTACTTCTATCTCTCTTGCAACAGCTTGCCTGTGATATCAACAATGATACACCTCGTAAACTTGCATGGATGACAGATGTGGCAACCGCCATAAACCCAAGCAACCAGATGATTGCAATGCATGTAAGACCCATCTTTGAGCAAGTTTATCAGATACTGCACCATCAACATAGCTTGCCTACACTCTCCAGTGTCGAGCAACATAGTCTTCGTCTTCTCATGCATGTCATTAACTCCATGATGATGGCCTGTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

1389

Amino Acids

150.85

Weight (kDa)

5.68

Isoelectric Point (pI)

50.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ge1_WD40 PF16529 211 - 523 7.9e-20 WD40 region of Ge1, enhancer of mRNA-decapping protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2564
AasI GACNNNNNNGTC 1 cut(s) 3149
AbsI CCTCGAGG 1 cut(s) 1882
Acc16I TGCGCA 1 cut(s) 1898
Acc36I ACCTGC 1 cut(s) 3421
Acc65I GGTACC 1 cut(s) 3409
AccB1I GGYRCC 6 cut(s) 214, 401, 487, 1972, 2591, 3409
AccBSI CCGCTC 1 cut(s) 3497
AccI GTMKAC 1 cut(s) 1135
AccII CGCG 2 cut(s) 428, 3091
AccIII TCCGGA 3 cut(s) 383, 886, 2627
AcoI YGGCCR 4 cut(s) 72, 2853, 3193, 3604
AcsI RAATTY 5 cut(s) 255, 873, 1616, 1765, 2435
AcuI CTGAAG 4 cut(s) 900, 1887, 2856, 3387
AcyI GRCGYC 3 cut(s) 215, 402, 441
AdeI CACNNNGTG 1 cut(s) 2777
AfaI GTAC 8 cut(s) 901, 1257, 1432, 2108, 2202, 2489, 3411, 3912
AfeI AGCGCT 1 cut(s) 302
AhdI GACNNNNNGTC 1 cut(s) 3188
AjiI CACGTC 1 cut(s) 2691
AjnI CCWGG 5 cut(s) 404, 2499, 3326, 3855, 3903
Alw21I GWGCWC 6 cut(s) 781, 1457, 1566, 2784, 3793, 3835
Alw26I GTCTC 3 cut(s) 528, 1255, 3704
Alw44I GTGCAC 1 cut(s) 1562
AlwNI CAGNNNCTG 2 cut(s) 2168, 4066
Ama87I CYCGRG 5 cut(s) 479, 605, 1467, 1882, 2529
Aor13HI TCCGGA 3 cut(s) 383, 886, 2627
Aor51HI AGCGCT 1 cut(s) 302
ApaI GGGCCC 1 cut(s) 192
ApaLI GTGCAC 1 cut(s) 1562
ApoI RAATTY 5 cut(s) 255, 873, 1616, 1765, 2435
ArsI GACNNNNNNTTYG 4 cut(s) 2702, 2734, 3728, 3760
AscI GGCGCGCC 1 cut(s) 426
AseI ATTAAT 1 cut(s) 2100
Asp700I GAANNNNTTC 2 cut(s) 233, 960
Asp718I GGTACC 1 cut(s) 3409
AspLEI GCGC 7 cut(s) 217, 303, 404, 428, 430, 1819, 1899
AsuC2I CCSGG 9 cut(s) 12, 339, 480, 481, 606, 607, 2041, 2530, 2531
AsuII TTCGAA 2 cut(s) 1925, 2141
AvaI CYCGRG 5 cut(s) 479, 605, 1467, 1882, 2529
AvaII GGWCC 8 cut(s) 884, 1120, 1346, 1374, 2644, 2756, 3182, 3686
AxyI CCTNAGG 1 cut(s) 2385
BaeGI GKGCMC 3 cut(s) 192, 492, 1566
BalI TGGCCA 3 cut(s) 74, 2855, 3606
BamHI GGATCC 4 cut(s) 507, 658, 1081, 3727
BanI GGYRCC 6 cut(s) 214, 401, 487, 1972, 2591, 3409
BanII GRGCYC 4 cut(s) 192, 781, 1457, 3010
BauI CACGAG 2 cut(s) 969, 3704
BbsI GAAGAC 3 cut(s) 426, 4109, 4115
Bbv12I GWGCWC 6 cut(s) 781, 1457, 1566, 2784, 3793, 3835
BbvCI CCTCAGC 4 cut(s) 246, 663, 1077, 1378
BceAI ACGGC 7 cut(s) 202, 228, 415, 499, 505, 872, 3180
BcgI CGANNNNNNTGC 2 cut(s) 1863, 1897
BciT130I CCWGG 5 cut(s) 406, 2501, 3328, 3857, 3905
BciVI GTATCC 2 cut(s) 1899, 3334
BclI TGATCA 1 cut(s) 3120
BcnI CCSGG 9 cut(s) 12, 339, 480, 481, 606, 607, 2041, 2530, 2531
BcoDI GTCTC 3 cut(s) 528, 1255, 3704
BfaI CTAG 5 cut(s) 837, 1407, 2217, 2774, 3390
BfmI CTRYAG 3 cut(s) 1947, 2160, 3213
BfoI RGCGCY 4 cut(s) 218, 304, 405, 1820
BfuAI ACCTGC 1 cut(s) 3421
BfuI GTATCC 2 cut(s) 1899, 3334
BglII AGATCT 5 cut(s) 764, 1221, 1368, 2417, 2509
BlpI GCTNAGC 2 cut(s) 2616, 3498
BmcAI AGTACT 4 cut(s) 1257, 2108, 2489, 3912
Bme18I GGWCC 8 cut(s) 884, 1120, 1346, 1374, 2644, 2756, 3182, 3686
BmeRI GACNNNNNGTC 1 cut(s) 3188
BmeT110I CYCGRG 5 cut(s) 479, 605, 1467, 1882, 2529
BmgBI CACGTC 1 cut(s) 2691
BpiI GAAGAC 3 cut(s) 426, 4109, 4115
BplI GAGNNNNNCTC 4 cut(s) 1444, 1476, 1876, 1908
BpmI CTGGAG 4 cut(s) 272, 314, 1781, 4081
Bpu10I CCTNAGC 5 cut(s) 246, 663, 1077, 1378, 3584
Bpu1102I GCTNAGC 2 cut(s) 2616, 3498
Bpu14I TTCGAA 2 cut(s) 1925, 2141
BpuEI CTTGAG 3 cut(s) 255, 3368, 3631
BpuMI CCSGG 9 cut(s) 12, 339, 480, 481, 606, 607, 2041, 2530, 2531
BsaHI GRCGYC 3 cut(s) 215, 402, 441
BsaI GGTCTC 2 cut(s) 1255, 3704
BsaWI WCCGGW 4 cut(s) 383, 886, 1975, 2627
Bse1I ACTGG 8 cut(s) 1123, 1194, 1906, 2647, 3118, 3149, 3600, 4098
Bse21I CCTNAGG 1 cut(s) 2385
Bse3DI GCAATG 2 cut(s) 351, 4032
BseAI TCCGGA 3 cut(s) 383, 886, 2627
BseBI CCWGG 5 cut(s) 406, 2501, 3328, 3857, 3905
BseMI GCAATG 2 cut(s) 351, 4032
BseNI ACTGG 8 cut(s) 1123, 1194, 1906, 2647, 3118, 3149, 3600, 4098
BsePI GCGCGC 1 cut(s) 426
BseRI GAGGAG 7 cut(s) 18, 258, 275, 1656, 2007, 2648, 3273
BseSI GKGCMC 3 cut(s) 192, 492, 1566
BseX3I CGGCCG 1 cut(s) 3193
BsgI GTGCAG 4 cut(s) 1893, 2589, 3501, 4052
Bsh1236I CGCG 2 cut(s) 428, 3091
Bsh1285I CGRYCG 1 cut(s) 3196
BshNI GGYRCC 6 cut(s) 214, 401, 487, 1972, 2591, 3409
BsiEI CGRYCG 1 cut(s) 3196
BsiHKAI GWGCWC 6 cut(s) 781, 1457, 1566, 2784, 3793, 3835
BsiHKCI CYCGRG 5 cut(s) 479, 605, 1467, 1882, 2529
BslFI GGGAC 3 cut(s) 1052, 1332, 1666
BsmAI GTCTC 3 cut(s) 528, 1255, 3704
BsmBI CGTCTC 1 cut(s) 528
BsmFI GGGAC 3 cut(s) 1052, 1332, 1666
BsmI GAATGC 4 cut(s) 534, 1481, 1552, 3480
Bso31I GGTCTC 2 cut(s) 1255, 3704
BsoBI CYCGRG 5 cut(s) 479, 605, 1467, 1882, 2529
Bsp119I TTCGAA 2 cut(s) 1925, 2141
Bsp120I GGGCCC 1 cut(s) 188
Bsp1286I GDGCHC 9 cut(s) 192, 492, 781, 1457, 1566, 2784, 3010, 3793, 3835
Bsp13I TCCGGA 3 cut(s) 383, 886, 2627
Bsp1407I TGTACA 1 cut(s) 2200
Bsp1720I GCTNAGC 2 cut(s) 2616, 3498
Bsp19I CCATGG 1 cut(s) 501
Bsp68I TCGCGA 1 cut(s) 3091
BspEI TCCGGA 3 cut(s) 383, 886, 2627
BspFNI CGCG 2 cut(s) 428, 3091
BspMAI CTGCAG 1 cut(s) 2164
BspMI ACCTGC 1 cut(s) 3421
BspT104I TTCGAA 2 cut(s) 1925, 2141
BspT107I GGYRCC 6 cut(s) 214, 401, 487, 1972, 2591, 3409
BspTNI GGTCTC 2 cut(s) 1255, 3704
BsrBI CCGCTC 1 cut(s) 3497
BsrDI GCAATG 2 cut(s) 351, 4032
BsrGI TGTACA 1 cut(s) 2200
BsrI ACTGG 8 cut(s) 1123, 1194, 1906, 2647, 3118, 3149, 3600, 4098
BssHII GCGCGC 1 cut(s) 426
BssNI GRCGYC 3 cut(s) 215, 402, 441
BssSI CACGAG 2 cut(s) 969, 3704
BssT1I CCWWGG 2 cut(s) 501, 3690
Bst2BI CACGAG 2 cut(s) 969, 3704
Bst2UI CCWGG 5 cut(s) 406, 2501, 3328, 3857, 3905
Bst4CI ACNGT 8 cut(s) 986, 1342, 1624, 1722, 1795, 2049, 2369, 3322
Bst6I CTCTTC 3 cut(s) 3015, 3057, 3768
BstACI GRCGYC 3 cut(s) 215, 402, 441
BstAPI GCANNNNNTGC 1 cut(s) 2612
BstAUI TGTACA 1 cut(s) 2200
BstBI TTCGAA 2 cut(s) 1925, 2141
BstDSI CCRYGG 1 cut(s) 501
BstEII GGTNACC 1 cut(s) 2087
BstFNI CGCG 2 cut(s) 428, 3091
BstH2I RGCGCY 4 cut(s) 218, 304, 405, 1820
BstHHI GCGC 7 cut(s) 217, 303, 404, 428, 430, 1819, 1899
BstMAI GTCTC 3 cut(s) 528, 1255, 3704
BstMCI CGRYCG 1 cut(s) 3196
BstNI CCWGG 5 cut(s) 406, 2501, 3328, 3857, 3905
BstNSI RCATGY 3 cut(s) 2602, 4034, 4136
BstPI GGTNACC 1 cut(s) 2087
BstSFI CTRYAG 3 cut(s) 1947, 2160, 3213
BstSLI GKGCMC 3 cut(s) 192, 492, 1566
BstUI CGCG 2 cut(s) 428, 3091
BstV2I GAAGAC 3 cut(s) 426, 4109, 4115
BstX2I RGATCY 9 cut(s) 507, 658, 764, 1081, 1221, 1368, 2417, 2509, 3727
BstXI CCANNNNNNTGG 4 cut(s) 412, 1130, 1189, 4153
BstYI RGATCY 9 cut(s) 507, 658, 764, 1081, 1221, 1368, 2417, 2509, 3727
BstZI CGGCCG 1 cut(s) 3193
Bsu36I CCTNAGG 1 cut(s) 2385
BsuI GTATCC 2 cut(s) 1899, 3334
BtgI CCRYGG 1 cut(s) 501
BtrI CACGTC 1 cut(s) 2691
BtsI GCAGTG 2 cut(s) 696, 753
BtuMI TCGCGA 1 cut(s) 3091
BveI ACCTGC 1 cut(s) 3421
CaiI CAGNNNCTG 2 cut(s) 2168, 4066
CfoI GCGC 7 cut(s) 217, 303, 404, 428, 430, 1819, 1899
Cfr9I CCCGGG 3 cut(s) 479, 605, 2529
CseI GACGC 3 cut(s) 430, 1997, 3349
Csp6I GTAC 8 cut(s) 900, 1256, 1431, 2107, 2201, 2488, 3410, 3911
CviQI GTAC 8 cut(s) 900, 1256, 1431, 2107, 2201, 2488, 3410, 3911
DinI GGCGCC 2 cut(s) 216, 403
DraI TTTAAA 2 cut(s) 85, 991
DraIII CACNNNGTG 1 cut(s) 2777
DrdI GACNNNNNNGTC 1 cut(s) 3149
DriI GACNNNNNGTC 1 cut(s) 3188
DseDI GACNNNNNNGTC 1 cut(s) 3149
EaeI YGGCCR 4 cut(s) 72, 2853, 3193, 3604
EagI CGGCCG 1 cut(s) 3193
Eam1104I CTCTTC 3 cut(s) 3015, 3057, 3768
Eam1105I GACNNNNNGTC 1 cut(s) 3188
EarI CTCTTC 3 cut(s) 3015, 3057, 3768
EciI GGCGGA 1 cut(s) 133
Ecl136II GAGCTC 2 cut(s) 779, 1455
EclXI CGGCCG 1 cut(s) 3193
Eco130I CCWWGG 2 cut(s) 501, 3690
Eco24I GRGCYC 4 cut(s) 192, 781, 1457, 3010
Eco31I GGTCTC 2 cut(s) 1255, 3704
Eco32I GATATC 1 cut(s) 3946
Eco47I GGWCC 8 cut(s) 884, 1120, 1346, 1374, 2644, 2756, 3182, 3686
Eco47III AGCGCT 1 cut(s) 302
Eco52I CGGCCG 1 cut(s) 3193
Eco53kI GAGCTC 2 cut(s) 779, 1455
Eco57I CTGAAG 4 cut(s) 900, 1887, 2856, 3387
Eco81I CCTNAGG 1 cut(s) 2385
Eco88I CYCGRG 5 cut(s) 479, 605, 1467, 1882, 2529
Eco91I GGTNACC 1 cut(s) 2087
EcoICRI GAGCTC 2 cut(s) 779, 1455
EcoO109I RGGNCCY 2 cut(s) 189, 1346
EcoO65I GGTNACC 1 cut(s) 2087
EcoRI GAATTC 1 cut(s) 1765
EcoRII CCWGG 5 cut(s) 404, 2499, 3326, 3855, 3903
EcoRV GATATC 1 cut(s) 3946
EcoT14I CCWWGG 2 cut(s) 501, 3690
EcoT22I ATGCAT 3 cut(s) 1483, 4032, 4134
EcoT38I GRGCYC 4 cut(s) 192, 781, 1457, 3010
EgeI GGCGCC 2 cut(s) 216, 403
EheI GGCGCC 2 cut(s) 216, 403
ErhI CCWWGG 2 cut(s) 501, 3690
Esp3I CGTCTC 1 cut(s) 528
FalI AAGNNNNNCTT 8 cut(s) 843, 875, 1503, 1535, 2343, 2375, 3462, 3494
FaqI GGGAC 3 cut(s) 1052, 1332, 1666
FauI CCCGC 5 cut(s) 330, 382, 519, 1764, 2807
FauNDI CATATG 1 cut(s) 2124
FbaI TGATCA 1 cut(s) 3120
FblI GTMKAC 1 cut(s) 1135
FriOI GRGCYC 4 cut(s) 192, 781, 1457, 3010
FspBI CTAG 5 cut(s) 837, 1407, 2217, 2774, 3390
FspI TGCGCA 1 cut(s) 1898
GlaI GCGC 7 cut(s) 216, 302, 403, 427, 429, 1818, 1898
GsuI CTGGAG 4 cut(s) 272, 314, 1781, 4081
HaeII RGCGCY 4 cut(s) 218, 304, 405, 1820
HgaI GACGC 3 cut(s) 430, 1997, 3349
HhaI GCGC 7 cut(s) 217, 303, 404, 428, 430, 1819, 1899
Hin1I GRCGYC 3 cut(s) 215, 402, 441
Hin6I GCGC 7 cut(s) 215, 301, 402, 426, 428, 1817, 1897
HinP1I GCGC 7 cut(s) 215, 301, 402, 426, 428, 1817, 1897
HincII GTYRAC 5 cut(s) 2116, 2320, 2365, 3104, 3301
HindII GTYRAC 5 cut(s) 2116, 2320, 2365, 3104, 3301
HindIII AAGCTT 2 cut(s) 1106, 3399
HpaI GTTAAC 1 cut(s) 2365
Hpy99I CGWCG 3 cut(s) 446, 520, 2695
HpyCH4III ACNGT 8 cut(s) 986, 1342, 1624, 1722, 1795, 2049, 2369, 3322
HpyCH4IV ACGT 2 cut(s) 2690, 3097
HpySE526I ACGT 2 cut(s) 2690, 3097
Hsp92I GRCGYC 3 cut(s) 215, 402, 441
HspAI GCGC 7 cut(s) 215, 301, 402, 426, 428, 1817, 1897
KasI GGCGCC 2 cut(s) 214, 401
KflI GGGWCCC 1 cut(s) 1346
Kpn2I TCCGGA 3 cut(s) 383, 886, 2627
KpnI GGTACC 1 cut(s) 3413
Ksp22I TGATCA 1 cut(s) 3120
KspAI GTTAAC 1 cut(s) 2365
LmnI GCTCC 6 cut(s) 308, 1312, 2447, 2501, 3563, 3739
MaeI CTAG 5 cut(s) 837, 1407, 2217, 2774, 3390
MaeII ACGT 2 cut(s) 2690, 3097
MbiI CCGCTC 1 cut(s) 3497
MfeI CAATTG 2 cut(s) 1809, 3284
MflI RGATCY 9 cut(s) 507, 658, 764, 1081, 1221, 1368, 2417, 2509, 3727
MhlI GDGCHC 9 cut(s) 192, 492, 781, 1457, 1566, 2784, 3010, 3793, 3835
MlsI TGGCCA 3 cut(s) 74, 2855, 3606
MluNI TGGCCA 3 cut(s) 74, 2855, 3606
Mly113I GGCGCC 2 cut(s) 215, 402
MlyI GAGTC 5 cut(s) 1427, 2035, 2804, 3521, 3568
MmeI TCCRAC 4 cut(s) 393, 2276, 2942, 3755
Mox20I TGGCCA 3 cut(s) 74, 2855, 3606
Mph1103I ATGCAT 3 cut(s) 1483, 4032, 4134
MroI TCCGGA 3 cut(s) 383, 886, 2627
MroXI GAANNNNTTC 2 cut(s) 233, 960
MscI TGGCCA 3 cut(s) 74, 2855, 3606
MslI CAYNNNNRTG 5 cut(s) 800, 1426, 2085, 3826, 4151
Msp20I TGGCCA 3 cut(s) 74, 2855, 3606
MspA1I CMGCKG 6 cut(s) 625, 667, 1759, 1877, 3188, 3632
MunI CAATTG 2 cut(s) 1809, 3284
Mva1269I GAATGC 4 cut(s) 534, 1481, 1552, 3480
MvaI CCWGG 5 cut(s) 406, 2501, 3328, 3857, 3905
MvnI CGCG 2 cut(s) 428, 3091
NarI GGCGCC 2 cut(s) 215, 402
NciI CCSGG 9 cut(s) 12, 339, 480, 481, 606, 607, 2041, 2530, 2531
NcoI CCATGG 1 cut(s) 501
NdeI CATATG 1 cut(s) 2124
NmeAIII GCCGAG 4 cut(s) 402, 558, 2557, 3031
NmuCI GTSAC 9 cut(s) 793, 1150, 1239, 1300, 1506, 2087, 3571, 3667, 3754
NruI TCGCGA 1 cut(s) 3091
NsbI TGCGCA 1 cut(s) 1898
NsiI ATGCAT 3 cut(s) 1483, 4032, 4134
NspI RCATGY 3 cut(s) 2602, 4034, 4136
NspV TTCGAA 2 cut(s) 1925, 2141
PaeR7I CTCGAG 2 cut(s) 1467, 1882
PalAI GGCGCGCC 1 cut(s) 426
PauI GCGCGC 1 cut(s) 426
PcsI WCGNNNNNNNCGW 1 cut(s) 641
PctI GAATGC 4 cut(s) 534, 1481, 1552, 3480
PdmI GAANNNNTTC 2 cut(s) 233, 960
PfeI GAWTC 7 cut(s) 1787, 1952, 2174, 2411, 2555, 2872, 3658
PfoI TCCNGGA 1 cut(s) 2039
PleI GAGTC 5 cut(s) 1426, 2034, 2803, 3520, 3568
PluTI GGCGCC 2 cut(s) 218, 405
PpsI GAGTC 5 cut(s) 1426, 2034, 2803, 3520, 3568
PpuMI RGGWCCY 1 cut(s) 1346
PshBI ATTAAT 1 cut(s) 2100
PsiI TTATAA 1 cut(s) 2564
Psp124BI GAGCTC 2 cut(s) 781, 1457
Psp5II RGGWCCY 1 cut(s) 1346
Psp6I CCWGG 5 cut(s) 404, 2499, 3326, 3855, 3903
PspEI GGTNACC 1 cut(s) 2087
PspGI CCWGG 5 cut(s) 404, 2499, 3326, 3855, 3903
PspOMI GGGCCC 1 cut(s) 188
PspPPI RGGWCCY 1 cut(s) 1346
PspXI VCTCGAGB 2 cut(s) 1467, 1882
PstI CTGCAG 1 cut(s) 2164
PstNI CAGNNNCTG 2 cut(s) 2168, 4066
PsuI RGATCY 9 cut(s) 507, 658, 764, 1081, 1221, 1368, 2417, 2509, 3727
PteI GCGCGC 1 cut(s) 426
PvuII CAGCTG 5 cut(s) 625, 667, 1877, 3188, 3632
RruI TCGCGA 1 cut(s) 3091
RsaI GTAC 8 cut(s) 901, 1257, 1432, 2108, 2202, 2489, 3411, 3912
RsaNI GTAC 8 cut(s) 900, 1256, 1431, 2107, 2201, 2488, 3410, 3911
RseI CAYNNNNRTG 5 cut(s) 800, 1426, 2085, 3826, 4151
SacI GAGCTC 2 cut(s) 781, 1457
ScaI AGTACT 4 cut(s) 1257, 2108, 2489, 3912
SchI GAGTC 5 cut(s) 1427, 2035, 2804, 3521, 3568
SduI GDGCHC 9 cut(s) 192, 492, 781, 1457, 1566, 2784, 3010, 3793, 3835
SfcI CTRYAG 3 cut(s) 1947, 2160, 3213
SfoI GGCGCC 2 cut(s) 216, 403
Sfr274I CTCGAG 2 cut(s) 1467, 1882
SfuI TTCGAA 2 cut(s) 1925, 2141
SgsI GGCGCGCC 1 cut(s) 426
SinI GGWCC 8 cut(s) 884, 1120, 1346, 1374, 2644, 2756, 3182, 3686
SlaI CTCGAG 2 cut(s) 1467, 1882
SmaI CCCGGG 3 cut(s) 481, 607, 2531
SmiMI CAYNNNNRTG 5 cut(s) 800, 1426, 2085, 3826, 4151
SmlI CTYRAG 5 cut(s) 270, 1467, 1882, 3383, 3646
SmoI CTYRAG 5 cut(s) 270, 1467, 1882, 3383, 3646
SspDI GGCGCC 2 cut(s) 214, 401
SspI AATATT 1 cut(s) 733
SspMI CTAG 5 cut(s) 837, 1407, 2217, 2774, 3390
SstI GAGCTC 2 cut(s) 781, 1457
StyI CCWWGG 2 cut(s) 501, 3690
TaaI ACNGT 8 cut(s) 986, 1342, 1624, 1722, 1795, 2049, 2369, 3322
TaiI ACGT 2 cut(s) 2693, 3100
TaqII GACCGA 1 cut(s) 3286
TatI WGTACW 5 cut(s) 1255, 2106, 2200, 2487, 3910
TauI GCSGC 9 cut(s) 43, 149, 365, 380, 454, 457, 622, 2681, 3497
TfiI GAWTC 7 cut(s) 1787, 1952, 2174, 2411, 2555, 2872, 3658
TseFI GTSAC 9 cut(s) 793, 1150, 1239, 1300, 1506, 2087, 3571, 3667, 3754
Tsp45I GTSAC 9 cut(s) 793, 1150, 1239, 1300, 1506, 2087, 3571, 3667, 3754
TspMI CCCGGG 3 cut(s) 479, 605, 2529
VneI GTGCAC 1 cut(s) 1562
VpaK11BI GGWCC 8 cut(s) 884, 1120, 1346, 1374, 2644, 2756, 3182, 3686
VspI ATTAAT 1 cut(s) 2100
XapI RAATTY 5 cut(s) 255, 873, 1616, 1765, 2435
XceI RCATGY 3 cut(s) 2602, 4034, 4136
XcmI CCANNNNNNNNNTGG 2 cut(s) 975, 3688
XhoI CTCGAG 2 cut(s) 1467, 1882
XmaI CCCGGG 3 cut(s) 479, 605, 2529
XmiI GTMKAC 1 cut(s) 1135
XmnI GAANNNNTTC 2 cut(s) 233, 960
XspI CTAG 5 cut(s) 837, 1407, 2217, 2774, 3390
ZrmI AGTACT 4 cut(s) 1257, 2108, 2489, 3912
Zsp2I ATGCAT 3 cut(s) 1483, 4032, 4134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.