Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000324

Physical Location & Seq

Genomic Coordinates Forward (+)

7930044 .. 7934024

Gene Structure 3981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1094900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGATGGTGCTCAATCGTTTATTCCTGAAGCAACCCAACAGGAGGAATTTTCTTGGAAGTCTCTTTGTGTTTCCGGCTTTGGGAGGTTTGTTGTTCGGATACGACATTGGTGCTACTTCTAGTGCTACCCTCTCTTTACAGTCGCCAGAGCTTAGTGGCACAGCTTGGTTTAAACTTTCAGCCATCCAGCTTGGTCTTGTGGAAGTTATTAATTCTGCATCACCGGTGACTCAAAACTTAAGCAGAGAAGTGGCTGACGGTCAACATAAGCTCATAGCTCTTGCAGCTGCACGAGGAAACTCAAGTGCAGTAAATCCTCTGGTACCTTTGGGTGGTCTTCATGAGAAGTTTGTGGATTCCGTGCTGCTGCGGTATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

127

Amino Acids

13.49

Weight (kDa)

9.69

Isoelectric Point (pI)

40.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca	FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica	MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica	Prupe.6G032100_v2.0.a1
pyrus_communis	pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis	RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata	RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora	Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii	Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa	Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha	Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana	Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	322
AccB1I	GGYRCC	1 cut(s)	322
AciI	CCGC	1 cut(s)	370
AcsI	RAATTY	1 cut(s)	46
AcuI	CTGAAG	1 cut(s)	47
AfaI	GTAC	1 cut(s)	324
AfiI	CCNNNNNNNGG	3 cut(s)	42, 80, 332
AflII	CTTAAG	1 cut(s)	238
AgeI	ACCGGT	1 cut(s)	223
AluBI	AGCT	6 cut(s)	151, 164, 190, 271, 278, 287
AluI	AGCT	6 cut(s)	151, 164, 190, 271, 278, 287
Alw21I	GWGCWC	1 cut(s)	12
Alw26I	GTCTC	1 cut(s)	65
ApeKI	GCWGC	4 cut(s)	284, 287, 364, 367
ApoI	RAATTY	1 cut(s)	46
AseI	ATTAAT	1 cut(s)	210
AsiGI	ACCGGT	1 cut(s)	223
Asp718I	GGTACC	1 cut(s)	322
AsuHPI	GGTGA	2 cut(s)	213, 238
BanI	GGYRCC	1 cut(s)	322
BauI	CACGAG	1 cut(s)	291
BbsI	GAAGAC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	12
BbvI	GCAGC	4 cut(s)	274, 296, 351, 354
BccI	CCATC	1 cut(s)	191
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BciVI	GTATCC	1 cut(s)	92
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	1 cut(s)	120
BfrI	CTTAAG	1 cut(s)	238
BfuI	GTATCC	1 cut(s)	92
BisI	GCNGC	4 cut(s)	285, 288, 365, 368
BlsI	GCNGC	4 cut(s)	286, 289, 366, 369
BmiI	GGNNCC	1 cut(s)	324
BmsI	GCATC	1 cut(s)	227
BpiI	GAAGAC	1 cut(s)	329
BpuEI	CTTGAG	1 cut(s)	286
BsaWI	WCCGGW	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 80, 332
Bse118I	RCCGGY	1 cut(s)	223
BseGI	GGATG	1 cut(s)	183
BseLI	CCNNNNNNNGG	3 cut(s)	42, 80, 332
BseXI	GCAGC	4 cut(s)	274, 296, 351, 354
BsgI	GTGCAG	2 cut(s)	273, 327
BshNI	GGYRCC	1 cut(s)	322
BshTI	ACCGGT	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	12
BsiSI	CCGG	2 cut(s)	74, 224
BslI	CCNNNNNNNGG	3 cut(s)	42, 80, 332
BsmAI	GTCTC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	12
BspACI	CCGC	1 cut(s)	370
BspHI	TCATGA	1 cut(s)	340
BspLI	GGNNCC	1 cut(s)	324
BspT107I	GGYRCC	1 cut(s)	322
BspTI	CTTAAG	1 cut(s)	238
BsrFI	RCCGGY	1 cut(s)	223
BssAI	RCCGGY	1 cut(s)	223
BssSI	CACGAG	1 cut(s)	291
Bst2BI	CACGAG	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	141, 260
BstAFI	CTTAAG	1 cut(s)	238
BstDEI	CTNAG	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	183
BstMAI	GTCTC	1 cut(s)	65
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstV1I	GCAGC	4 cut(s)	274, 296, 351, 354
BstV2I	GAAGAC	1 cut(s)	329
BsuI	GTATCC	1 cut(s)	92
BtsCI	GGATG	1 cut(s)	183
CciI	TCATGA	1 cut(s)	340
Cfr10I	RCCGGY	1 cut(s)	223
Csp6I	GTAC	1 cut(s)	323
CspAI	ACCGGT	1 cut(s)	223
CviAII	CATG	1 cut(s)	341
CviJI	RGCY	9 cut(s)	77, 151, 164, 182, 190, 254, 271, 278, 287
CviKI_1	RGCY	9 cut(s)	77, 151, 164, 182, 190, 254, 271, 278, 287
CviQI	GTAC	1 cut(s)	323
DdeI	CTNAG	1 cut(s)	152
DraI	TTTAAA	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	47
FaeI	CATG	1 cut(s)	344
FaiI	YATR	4 cut(s)	267, 275, 342, 375
FatI	CATG	1 cut(s)	340
Fnu4HI	GCNGC	4 cut(s)	285, 288, 365, 368
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	4 cut(s)	285, 288, 365, 368
FspBI	CTAG	1 cut(s)	120
GluI	GCNGC	4 cut(s)	285, 288, 365, 368
HapII	CCGG	2 cut(s)	74, 224
Hin1II	CATG	1 cut(s)	344
HincII	GTYRAC	1 cut(s)	263
HindII	GTYRAC	1 cut(s)	263
HinfI	GANTC	2 cut(s)	229, 356
HpaII	CCGG	2 cut(s)	74, 224
HphI	GGTGA	2 cut(s)	213, 238
Hpy166II	GTNNAC	1 cut(s)	263
Hpy188I	TCNGA	1 cut(s)	98
Hpy188III	TCNNGA	2 cut(s)	25, 341
Hpy8I	GTNNAC	1 cut(s)	263
HpyCH4III	ACNGT	2 cut(s)	141, 260
HpyCH4V	TGCA	4 cut(s)	218, 284, 290, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	1 cut(s)	152
Hsp92II	CATG	1 cut(s)	344
KpnI	GGTACC	1 cut(s)	326
LpnPI	CCDG	7 cut(s)	25, 38, 87, 159, 200, 237, 305
Lsp1109I	GCAGC	4 cut(s)	274, 296, 351, 354
LweI	GCATC	1 cut(s)	227
MaeI	CTAG	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	226
MboII	GAAGA	1 cut(s)	329
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	2 cut(s)	46, 211
MlyI	GAGTC	1 cut(s)	223
MnlI	CCTC	5 cut(s)	36, 77, 140, 287, 327
MseI	TTAA	4 cut(s)	171, 210, 239, 379
MspA1I	CMGCKG	1 cut(s)	287
MspCI	CTTAAG	1 cut(s)	238
MspI	CCGG	2 cut(s)	74, 224
MssI	GTTTAAAC	1 cut(s)	172
MwoI	GCNNNNNNNGC	1 cut(s)	284
NlaIII	CATG	1 cut(s)	344
NlaIV	GGNNCC	1 cut(s)	324
NmuCI	GTSAC	1 cut(s)	226
PagI	TCATGA	1 cut(s)	340
PfeI	GAWTC	1 cut(s)	356
PinAI	ACCGGT	1 cut(s)	223
PkrI	GCNGC	4 cut(s)	286, 289, 366, 369
PleI	GAGTC	1 cut(s)	223
PmeI	GTTTAAAC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	223
PshBI	ATTAAT	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	324
PvuII	CAGCTG	1 cut(s)	287
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
SaqAI	TTAA	4 cut(s)	171, 210, 239, 379
SatI	GCNGC	4 cut(s)	285, 288, 365, 368
SchI	GAGTC	1 cut(s)	223
SduI	GDGCHC	1 cut(s)	12
SetI	ASST	8 cut(s)	88, 153, 166, 192, 273, 280, 289, 328
SfaNI	GCATC	1 cut(s)	227
SgrAI	CRCCGGYG	1 cut(s)	223
SmlI	CTYRAG	2 cut(s)	238, 301
SmoI	CTYRAG	2 cut(s)	238, 301
Sse9I	AATT	2 cut(s)	46, 211
SsiI	CCGC	1 cut(s)	370
SspMI	CTAG	1 cut(s)	120
TaaI	ACNGT	2 cut(s)	141, 260
TasI	AATT	2 cut(s)	46, 211
TfiI	GAWTC	1 cut(s)	356
Tru1I	TTAA	4 cut(s)	171, 210, 239, 379
Tru9I	TTAA	4 cut(s)	171, 210, 239, 379
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	4 cut(s)	284, 287, 364, 367
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	329
TspGWI	ACGGA	1 cut(s)	349
Vha464I	CTTAAG	1 cut(s)	238
VspI	ATTAAT	1 cut(s)	210
XapI	RAATTY	1 cut(s)	46
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.