Rroxscaffold_1G00006430

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000324
Physical Location & Seq
Forward (+)
8500531 .. 8502018
1488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00006430.1

Sequence Viewer

Length: 753 bp
ATGGAAGCTTCAGTGGTACCTGCCTTTGAGAAGTCATGTAAAGCCATGTTTGAGCAAGTAGATGCCACATTCCAGAAAGGAATGGTCGAACATGCAACTGTGGCTCAGCAGCATTTTGAGTCTGCACATTCACCGTTGGCCCATGCTTTAAGGGAAGCTATCAGCTCCGCATCATCAGTGACTCAAACCCTAAGTGGAGAACTGGCTGATGGGCAACGTAAGTTAGTAGCTCTTGCAGCTGCACGGGGAAACTCAAGTGCGGTAAATCCCCTAGTCACTCAACTAACCAATGGACCTTTGGGTGGTCTCCATGAGAAGGTTGAGGTGCCTTTGGATCCAACAAAGGAGCTGTCAAGGTTGGTAACTGAACGCAAGTATGAGGAGGCTTTCACAGGTGCTCTACAAAGAAGTGATGTTGGCATTGTATCATGGTTATGTGCTCAGGTTGATCTTCATGGGATACTGTTGCTGCAACCTGTTCCTCTGAGCCAAGGAGTACTTCTTTCGCTCCTGCAACAGCTGGCCTGTGATATCAGCAATGATACACCCCGGAAAGTTGCATGGATGACAGACGTGGCAGCCGCCATAAACCCATCCAACCAGATGATTGCAATGCACGTGAGACCCATCTTTGAGCAAGTTTATCAGATACTGCACCATCAACATAGCTTGCCTACGATCTCCAGTGCTGAGCATGCTAGTCTTCGTCTTCTCATGCATGTCATTAACTCCATGATGATGGCCTGTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

250

Amino Acids

27.14

Weight (kDa)

6.16

Isoelectric Point (pI)

36.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDC4_C PF21289 119 - 223 5.4e-18 Enhancer of mRNA-decapping protein 4, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 28
Acc65I GGTACC 1 cut(s) 16
AccB1I GGYRCC 2 cut(s) 16, 325
AciI CCGC 3 cut(s) 168, 260, 582
AclWI GGATC 2 cut(s) 329, 342
AcvI CACGTG 1 cut(s) 619
AfaI GTAC 2 cut(s) 18, 498
AfiI CCNNNNNNNGG 2 cut(s) 302, 316
AjiI CACGTC 1 cut(s) 574
AjuI GAANNNNNNNTTGG 2 cut(s) 483, 515
AluBI AGCT 8 cut(s) 8, 158, 165, 230, 239, 349, 520, 669
AluI AGCT 8 cut(s) 8, 158, 165, 230, 239, 349, 520, 669
Alw21I GWGCWC 2 cut(s) 400, 442
Alw26I GTCTC 2 cut(s) 311, 616
AlwI GGATC 2 cut(s) 329, 342
AlwNI CAGNNNCTG 1 cut(s) 652
AoxI GGCC 3 cut(s) 138, 522, 741
ApeKI GCWGC 5 cut(s) 109, 236, 239, 469, 578
ArsI GACNNNNNNTTYG 2 cut(s) 335, 367
Asp718I GGTACC 1 cut(s) 16
AspS9I GGNCC 2 cut(s) 139, 293
AsuC2I CCSGG 1 cut(s) 550
AsuHPI GGTGA 1 cut(s) 123
AvaII GGWCC 1 cut(s) 293
BamHI GGATCC 1 cut(s) 334
BanI GGYRCC 2 cut(s) 16, 325
BbrPI CACGTG 1 cut(s) 619
BbsI GAAGAC 2 cut(s) 695, 701
Bbv12I GWGCWC 2 cut(s) 400, 442
BbvI GCAGC 5 cut(s) 121, 226, 248, 456, 590
BccI CCATC 5 cut(s) 203, 601, 635, 666, 733
BciVI GTATCC 1 cut(s) 453
BcnI CCSGG 1 cut(s) 550
BcoDI GTCTC 2 cut(s) 311, 616
BfaI CTAG 2 cut(s) 272, 699
BfuAI ACCTGC 1 cut(s) 28
BfuI GTATCC 1 cut(s) 453
BisI GCNGC 6 cut(s) 110, 237, 240, 470, 579, 582
BlpI GCTNAGC 2 cut(s) 105, 690
BlsI GCNGC 6 cut(s) 111, 238, 241, 471, 580, 583
BmcAI AGTACT 1 cut(s) 498
Bme1390I CCNGG 1 cut(s) 550
Bme18I GGWCC 1 cut(s) 293
BmgBI CACGTC 1 cut(s) 574
BmgT120I GGNCC 2 cut(s) 139, 293
BmiI GGNNCC 3 cut(s) 18, 327, 336
BmrFI CCNGG 1 cut(s) 550
BmsI GCATC 2 cut(s) 52, 179
BpiI GAAGAC 2 cut(s) 695, 701
BpmI CTGGAG 1 cut(s) 667
Bpu10I CCTNAGC 1 cut(s) 441
Bpu1102I GCTNAGC 2 cut(s) 105, 690
BpuEI CTTGAG 1 cut(s) 238
BpuMI CCSGG 1 cut(s) 550
BsaAI YACGTR 1 cut(s) 619
BsaI GGTCTC 2 cut(s) 311, 616
BsaJI CCNNGG 2 cut(s) 490, 548
Bsc4I CCNNNNNNNGG 2 cut(s) 302, 316
Bse1I ACTGG 2 cut(s) 207, 684
Bse3DI GCAATG 2 cut(s) 544, 618
BseDI CCNNGG 2 cut(s) 490, 548
BseGI GGATG 2 cut(s) 570, 593
BseLI CCNNNNNNNGG 2 cut(s) 302, 316
BseMI GCAATG 2 cut(s) 544, 618
BseMII CTCAG 4 cut(s) 119, 455, 476, 681
BseNI ACTGG 2 cut(s) 207, 684
BseRI GAGGAG 1 cut(s) 395
BseXI GCAGC 5 cut(s) 121, 226, 248, 456, 590
BsgI GTGCAG 3 cut(s) 108, 225, 638
BshFI GGCC 3 cut(s) 140, 524, 743
BshNI GGYRCC 2 cut(s) 16, 325
BsiHKAI GWGCWC 2 cut(s) 400, 442
BsiSI CCGG 1 cut(s) 550
BslI CCNNNNNNNGG 2 cut(s) 302, 316
BsmAI GTCTC 2 cut(s) 311, 616
BsnI GGCC 3 cut(s) 140, 524, 743
Bso31I GGTCTC 2 cut(s) 311, 616
Bsp1286I GDGCHC 2 cut(s) 400, 442
Bsp143I GATC 3 cut(s) 334, 448, 678
Bsp1720I GCTNAGC 2 cut(s) 105, 690
BspACI CCGC 3 cut(s) 168, 260, 582
BspANI GGCC 3 cut(s) 140, 524, 743
BspCNI CTCAG 4 cut(s) 118, 454, 477, 682
BspLI GGNNCC 3 cut(s) 18, 327, 336
BspMI ACCTGC 1 cut(s) 28
BspPI GGATC 2 cut(s) 329, 342
BspT107I GGYRCC 2 cut(s) 16, 325
BspTNI GGTCTC 2 cut(s) 311, 616
BsrDI GCAATG 2 cut(s) 544, 618
BsrI ACTGG 2 cut(s) 207, 684
BssECI CCNNGG 2 cut(s) 490, 548
BssMI GATC 3 cut(s) 334, 448, 678
BssT1I CCWWGG 1 cut(s) 490
Bst4CI ACNGT 3 cut(s) 100, 135, 465
BstBAI YACGTR 1 cut(s) 619
BstC8I GCNNGC 3 cut(s) 522, 671, 696
BstDEI CTNAG 5 cut(s) 105, 191, 441, 485, 690
BstF5I GGATG 2 cut(s) 570, 593
BstKTI GATC 3 cut(s) 337, 451, 681
BstMAI GTCTC 2 cut(s) 311, 616
BstMBI GATC 3 cut(s) 334, 448, 678
BstMWI GCNNNNNNNGC 3 cut(s) 101, 236, 695
BstNSI RCATGY 3 cut(s) 95, 698, 722
BstSCI CCNGG 1 cut(s) 548
BstV1I GCAGC 5 cut(s) 121, 226, 248, 456, 590
BstV2I GAAGAC 2 cut(s) 695, 701
BstX2I RGATCY 1 cut(s) 334
BstXI CCANNNNNNTGG 1 cut(s) 739
BstYI RGATCY 1 cut(s) 334
BsuI GTATCC 1 cut(s) 453
BsuRI GGCC 3 cut(s) 140, 524, 743
BtrI CACGTC 1 cut(s) 574
BtsCI GGATG 2 cut(s) 570, 593
BtsIMutI CAGTG 3 cut(s) 18, 183, 691
BveI ACCTGC 1 cut(s) 28
Cac8I GCNNGC 3 cut(s) 522, 671, 696
CaiI CAGNNNCTG 1 cut(s) 652
Cfr13I GGNCC 2 cut(s) 139, 293
Csp6I GTAC 2 cut(s) 17, 497
CviQI GTAC 2 cut(s) 17, 497
DdeI CTNAG 5 cut(s) 105, 191, 441, 485, 690
DpnI GATC 3 cut(s) 336, 450, 680
DpnII GATC 3 cut(s) 334, 448, 678
Eco130I CCWWGG 1 cut(s) 490
Eco31I GGTCTC 2 cut(s) 311, 616
Eco32I GATATC 1 cut(s) 532
Eco47I GGWCC 1 cut(s) 293
Eco72I CACGTG 1 cut(s) 619
EcoRV GATATC 1 cut(s) 532
EcoT14I CCWWGG 1 cut(s) 490
EcoT22I ATGCAT 1 cut(s) 720
ErhI CCWWGG 1 cut(s) 490
FalI AAGNNNNNCTT 2 cut(s) 483, 515
Fnu4HI GCNGC 6 cut(s) 110, 237, 240, 470, 579, 582
FokI GGATG 2 cut(s) 577, 580
Fsp4HI GCNGC 6 cut(s) 110, 237, 240, 470, 579, 582
FspBI CTAG 2 cut(s) 272, 699
GluI GCNGC 6 cut(s) 110, 237, 240, 470, 579, 582
GsuI CTGGAG 1 cut(s) 667
HaeIII GGCC 3 cut(s) 140, 524, 743
HapII CCGG 1 cut(s) 550
HindIII AAGCTT 1 cut(s) 6
HinfI GANTC 2 cut(s) 119, 181
HpaII CCGG 1 cut(s) 550
HphI GGTGA 1 cut(s) 123
Hpy188I TCNGA 2 cut(s) 486, 648
Hpy188III TCNNGA 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 310
HpyCH4III ACNGT 3 cut(s) 100, 135, 465
HpyCH4IV ACGT 3 cut(s) 217, 573, 618
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 236, 695
HpyF3I CTNAG 5 cut(s) 105, 191, 441, 485, 690
HpySE526I ACGT 3 cut(s) 217, 573, 618
KpnI GGTACC 1 cut(s) 20
Kzo9I GATC 3 cut(s) 334, 448, 678
LmnI GCTCC 3 cut(s) 170, 346, 513
Lsp1109I GCAGC 5 cut(s) 121, 226, 248, 456, 590
LweI GCATC 2 cut(s) 52, 179
MaeI CTAG 2 cut(s) 272, 699
MaeII ACGT 3 cut(s) 217, 573, 618
MaeIII GTNAC 3 cut(s) 178, 274, 361
MalI GATC 3 cut(s) 336, 450, 680
MboI GATC 3 cut(s) 334, 448, 678
MboII GAAGA 3 cut(s) 443, 695, 701
MflI RGATCY 1 cut(s) 334
MhlI GDGCHC 2 cut(s) 400, 442
MlyI GAGTC 2 cut(s) 128, 175
MmeI TCCRAC 2 cut(s) 362, 621
MnlI CCTC 4 cut(s) 316, 373, 376, 492
Mph1103I ATGCAT 1 cut(s) 720
MseI TTAA 2 cut(s) 149, 726
MslI CAYNNNNRTG 2 cut(s) 433, 737
MspA1I CMGCKG 2 cut(s) 239, 520
MspI CCGG 1 cut(s) 550
MspR9I CCNGG 1 cut(s) 550
MwoI GCNNNNNNNGC 3 cut(s) 101, 236, 695
NciI CCSGG 1 cut(s) 550
NdeII GATC 3 cut(s) 334, 448, 678
NlaIV GGNNCC 3 cut(s) 18, 327, 336
NmuCI GTSAC 2 cut(s) 178, 274
NsiI ATGCAT 1 cut(s) 720
NspI RCATGY 3 cut(s) 95, 698, 722
PaeI GCATGC 1 cut(s) 698
PkrI GCNGC 6 cut(s) 111, 238, 241, 471, 580, 583
PleI GAGTC 2 cut(s) 127, 175
PmaCI CACGTG 1 cut(s) 619
PmlI CACGTG 1 cut(s) 619
PpsI GAGTC 2 cut(s) 127, 175
Ppu21I YACGTR 1 cut(s) 619
PspCI CACGTG 1 cut(s) 619
PspN4I GGNNCC 3 cut(s) 18, 327, 336
PspPI GGNCC 2 cut(s) 139, 293
PstNI CAGNNNCTG 1 cut(s) 652
PsuI RGATCY 1 cut(s) 334
PvuII CAGCTG 2 cut(s) 239, 520
RsaI GTAC 2 cut(s) 18, 498
RsaNI GTAC 2 cut(s) 17, 497
RseI CAYNNNNRTG 2 cut(s) 433, 737
SaqAI TTAA 2 cut(s) 149, 726
SatI GCNGC 6 cut(s) 110, 237, 240, 470, 579, 582
Sau3AI GATC 3 cut(s) 334, 448, 678
Sau96I GGNCC 2 cut(s) 139, 293
ScaI AGTACT 1 cut(s) 498
SchI GAGTC 2 cut(s) 128, 175
ScrFI CCNGG 1 cut(s) 550
SduI GDGCHC 2 cut(s) 400, 442
SfaNI GCATC 2 cut(s) 52, 179
SinI GGWCC 1 cut(s) 293
SmiMI CAYNNNNRTG 2 cut(s) 433, 737
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
SphI GCATGC 1 cut(s) 698
SsiI CCGC 3 cut(s) 168, 260, 582
SspMI CTAG 2 cut(s) 272, 699
StyD4I CCNGG 1 cut(s) 548
StyI CCWWGG 1 cut(s) 490
TaaI ACNGT 3 cut(s) 100, 135, 465
TaiI ACGT 3 cut(s) 220, 576, 621
TaqI TCGA 1 cut(s) 87
TatI WGTACW 1 cut(s) 496
TauI GCSGC 1 cut(s) 584
Tru1I TTAA 2 cut(s) 149, 726
Tru9I TTAA 2 cut(s) 149, 726
TscAI CASTG 3 cut(s) 18, 183, 691
TseFI GTSAC 2 cut(s) 178, 274
TseI GCWGC 5 cut(s) 109, 236, 239, 469, 578
Tsp45I GTSAC 2 cut(s) 178, 274
TspDTI ATGAA 1 cut(s) 443
TspRI CASTG 3 cut(s) 18, 183, 691
VpaK11BI GGWCC 1 cut(s) 293
XceI RCATGY 3 cut(s) 95, 698, 722
XcmI CCANNNNNNNNNTGG 1 cut(s) 295
XspI CTAG 2 cut(s) 272, 699
ZrmI AGTACT 1 cut(s) 498
Zsp2I ATGCAT 1 cut(s) 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.