FvH4_3g42820

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000324
Physical Location & Seq
Forward (+)
35773040 .. 35781016
7977 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g42820.t3

Sequence Viewer

Length: 2409 bp
ATGTCGAGCGATAAGCTGCCGCAAGGACGGCATTTGAGTGGGGTCAGTGTGGTTTACGATGTGGATGTTAGGCGGCCCGGGGAGTTTCAGCCGCAGCTGGGAGTTAGGTCGACGATTACGAACTATGATCCTCAGCCGGTGTTGGGCCGCCAAATTGCGGTGAATAAGTCGTATATATGCTGTGGATTGAAACAGGGGAATATTCGGGTTTTGAATAACCACACCGGATTGGAATGTTTGCTTCGAGCTCATACACAGAGGGTCACAGACATGGCTTTCTTTGCCGAGGATGTTCACCTTTTGGCTAGTGTGAGTGTAGAAGGACGGCTTTTTGTGTGGAAAATTTCTGAAGGTCTGGATGAAGGAGGTACGCCACAAATCACAGGAAAGATTGTTATTGCCATTCAAATAGTTGATGAGGGGGAAGCTGTTCATCCAAGAGTTTGTTGGCACTGTTCTAAACAAGAGATTTTGTTTGTTGGGGTGGGGAAGCGTGTTCTACGAATTGATACTACTAAAGTTGCAAAGTGTGGAGTCCCTTCTGCTGAGGATCCTATCAAATGTCCTGTTGAAAAACTCATTGATGGGGTTCAATTTGTTGGTGAACATGATGGAGAGGTGACAGATTTATCAATGTGCCAAGGGATGACTACCACCCGGCTGGTTTCTGCTTCTATGGATGGAACTATAAAGATCTGGGATGATCGCAAGACACAACCACTTATAGTACTGAGACCCTATGGTGGCCTTCCTGTTTATTCGTCTATATTTATGACAGCTCCCAACAAACCAGATCACATCATACTTGTAACAGTGGGCCCACTTAATCGGGAAGTGAAGATCTGGTCCTCAGCAACTGAAGTGCTTACCAGTGATGATGAATCATGGAAATGTACCCAGACCTTAGAGTTAAAGAGCTCTGCTCAACCTCGAGTTGAGGATGCATTCTTTAATCAAGTCATAGCATTGTCACAAGCTGGCCTTCTTTTACTTGCAAATGCTAAGAAGGAGGCCATATATGCCGTGCACATAGACTTTGGTGGTGAGCCAGCAGCTACACACATGGATTACATAGTAGAATTTACTGTTGCAATGCCTGTTTTGAGCTTTACGGGGACAAGTATATCTCCTCATGGTGAACAAATCGTTCAGGTTTATGGTATCTTTACGGGGACAAGTATATCTCCTCATGGTGAACAAATCGTTCAGGTTTATTGTGTCCAGACACGAGCCATTCAACAGTATGATTTGGACATATCGAAGTGTTTACCTCCCCCGCTGGTGATGTCAACTAATTCAGCATCGAGACCTGGGAAACTGCCTGGTATAAGAAGCCTGACAGATGGCACCCATAGTGGTGACCAACAAGTTAATGAGTACTCGATTGACAACAACACTGGGGGGGATGCAAATTTCCATGAAGTGGTTGATAACAGTGATGAGGGTAATCCTGAGTTAAAAGTCAACACTGCAGTTCTTCAAATTAAGGCCATGCGGGATGAGATGGATCAGCTGGAGATTAAGCAAAAAGACTTGCAAAAAGAATTGCAAGAGCATATGACAATGAGGAAGAAGGCCATAAAAGACAATGCTGATGCTCTGCAGTTGGCTTTATCCAATTGCTTTCAGAAATTGGAGAAATCAGTCCTTGAAGCTACTGTACACAGGCAAATCCAGTTGGATTTTGAAAATCCGGGTAACCAATCTCTTCGGGATGCTCTCAAGTCTAGCATAGAAGCTTCAATGGTACCTGCTATTGAAAAGTCATGTGATGCCATGTATCAGAAAGTAATTGCTAAATTACAGACTGCCGAGCAGCAGCATTTTGAGTCTGTGCATTCACCTTTGGCCAATTCTATAAGGGACATTATTAAGTCCGTATCATCAACTACTCAATTCCTAAGCACAGAACTGGCTGGTGGCCACCGCTATTTATTGGATCTCGTAGTTGGAGGGGGAAATTTAAGTGCGGTAAATCCCCTAGGCAGTCAAGTAACCGGTGGTTTCCACGAGAAGGTTGAGGTTTCATTGGATCCAAGAGAGGAGCTGCGAAGGTTGGTGCTTGAAAGCAAGTATGAGGTCGCTTTCAGGAGTGCTCTACAAAGAAATGATATTGGCATTGTATATTGGTTATGTCATGAGGTTAATCTTCATGGCATACTGCAACATTCTCTTCTGAGCCAAGAAATACTTTTTCCACTCTTCCAACAGCTGGCCTATGGTTTCAACATTGATCCAATCGTTGATGCATGGATGAGAGATGTGGCAATCGCCATGAACCAGACTTTTGCTATTCATGGAAAAGAGAGAGTTCTTCAAGTACTGCATGAGCTATGTCACTTGCCTGCGGTCTCCAACGTCGATCGAGGTAGGATTACTGATCTCATGGATTTCATAGACAACATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

803

Amino Acids

88.72

Weight (kDa)

5.55

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ge1_WD40 PF16529 49 - 344 4.8e-15 WD40 region of Ge1, enhancer of mRNA-decapping protein
EDC4_C PF21289 684 - 779 1.5e-07 Enhancer of mRNA-decapping protein 4, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1759
Acc65I GGTACC 1 cut(s) 1747
AccB1I GGYRCC 2 cut(s) 1346, 1747
AccB7I CCANNNNNTGG 2 cut(s) 1423, 2212
AccI GTMKAC 1 cut(s) 110
AclWI GGATC 8 cut(s) 122, 545, 558, 1515, 1947, 2027, 2040, 2228
AcoI YGGCCR 2 cut(s) 1848, 1921
AcsI RAATTY 4 cut(s) 342, 1079, 1411, 1960
AcuI CTGAAG 2 cut(s) 369, 879
AfaI GTAC 7 cut(s) 370, 729, 895, 1379, 1662, 1749, 2322
AfiI CCNNNNNNNGG 7 cut(s) 98, 143, 157, 743, 1423, 2014, 2212
AgeI ACCGGT 1 cut(s) 1997
AjnI CCWGG 2 cut(s) 1309, 1321
Alw21I GWGCWC 4 cut(s) 250, 920, 1029, 2098
Alw26I GTCTC 3 cut(s) 727, 1300, 2356
Alw44I GTGCAC 1 cut(s) 1025
AlwI GGATC 8 cut(s) 122, 545, 558, 1515, 1947, 2027, 2040, 2228
AlwNI CAGNNNCTG 1 cut(s) 857
Ama87I CYCGRG 2 cut(s) 77, 930
ApaI GGGCCC 1 cut(s) 821
ApaLI GTGCAC 1 cut(s) 1025
ApeKI GCWGC 6 cut(s) 16, 94, 1052, 1816, 1819, 2047
ApoI RAATTY 4 cut(s) 342, 1079, 1411, 1960
AsiGI ACCGGT 1 cut(s) 1997
Asp700I GAANNNNTTC 1 cut(s) 429
Asp718I GGTACC 1 cut(s) 1747
AspA2I CCTAGG 1 cut(s) 1981
AspS9I GGNCC 5 cut(s) 75, 145, 817, 818, 846
AsuC2I CCSGG 4 cut(s) 78, 79, 658, 1695
AvaI CYCGRG 2 cut(s) 77, 930
AvaII GGWCC 1 cut(s) 846
AvrII CCTAGG 1 cut(s) 1981
BaeGI GKGCMC 2 cut(s) 821, 1029
BalI TGGCCA 2 cut(s) 1850, 1923
BamHI GGATCC 2 cut(s) 550, 2032
BanI GGYRCC 2 cut(s) 1346, 1747
BanII GRGCYC 3 cut(s) 250, 821, 920
BarI GAAGNNNNNNTAC 2 cut(s) 1644, 1676
BauI CACGAG 2 cut(s) 1227, 2009
Bbv12I GWGCWC 4 cut(s) 250, 920, 1029, 2098
BbvCI CCTCAGC 3 cut(s) 132, 546, 850
BbvI GCAGC 6 cut(s) 3, 106, 1064, 1828, 1831, 2034
BccI CCATC 5 cut(s) 578, 605, 674, 1337, 1498
BceAI ACGGC 3 cut(s) 44, 341, 1007
BciT130I CCWGG 2 cut(s) 1311, 1323
BcnI CCSGG 4 cut(s) 78, 79, 658, 1695
BcoDI GTCTC 3 cut(s) 727, 1300, 2356
BfaI CTAG 3 cut(s) 306, 1728, 1982
BfmI CTRYAG 2 cut(s) 1470, 1601
BfuAI ACCTGC 1 cut(s) 1759
BglII AGATCT 2 cut(s) 693, 840
BlnI CCTAGG 1 cut(s) 1981
BmcAI AGTACT 3 cut(s) 729, 1379, 2322
Bme1390I CCNGG 6 cut(s) 78, 79, 658, 1311, 1323, 1695
Bme18I GGWCC 1 cut(s) 846
BmeT110I CYCGRG 2 cut(s) 77, 930
BmgT120I GGNCC 5 cut(s) 75, 145, 817, 818, 846
BmiI GGNNCC 5 cut(s) 552, 819, 1348, 1749, 2034
BmrFI CCNGG 6 cut(s) 78, 79, 658, 1311, 1323, 1695
BmrI ACTGGG 1 cut(s) 1407
BmsI GCATC 7 cut(s) 931, 1310, 1396, 1585, 1705, 1762, 2236
BmuI ACTGGG 1 cut(s) 1407
BplI GAGNNNNNCTC 2 cut(s) 907, 939
BpmI CTGGAG 1 cut(s) 1535
Bpu10I CCTNAGC 4 cut(s) 132, 546, 850, 1901
BpuEI CTTGAG 1 cut(s) 1706
BpuMI CCSGG 4 cut(s) 78, 79, 658, 1695
BsaI GGTCTC 3 cut(s) 727, 1300, 2356
BsaJI CCNNGG 6 cut(s) 77, 78, 285, 640, 1310, 1981
BsaWI WCCGGW 2 cut(s) 224, 1997
Bsc4I CCNNNNNNNGG 7 cut(s) 98, 143, 157, 743, 1423, 2014, 2212
Bse118I RCCGGY 2 cut(s) 136, 1997
Bse1I ACTGG 4 cut(s) 870, 1402, 1675, 1917
Bse3DI GCAATG 1 cut(s) 1098
BseBI CCWGG 2 cut(s) 1311, 1323
BseDI CCNNGG 6 cut(s) 77, 78, 285, 640, 1310, 1981
BseLI CCNNNNNNNGG 7 cut(s) 98, 143, 157, 743, 1423, 2014, 2212
BseMI GCAATG 1 cut(s) 1098
BseMII CTCAG 6 cut(s) 146, 537, 722, 864, 1443, 2168
BseNI ACTGG 4 cut(s) 870, 1402, 1675, 1917
BseRI GAGGAG 3 cut(s) 1119, 1176, 2057
BseSI GKGCMC 2 cut(s) 821, 1029
BseXI GCAGC 6 cut(s) 3, 106, 1064, 1828, 1831, 2034
BseYI CCCAGC 1 cut(s) 97
Bsh1285I CGRYCG 1 cut(s) 2365
BshNI GGYRCC 2 cut(s) 1346, 1747
BshTI ACCGGT 1 cut(s) 1997
BsiEI CGRYCG 1 cut(s) 2365
BsiHKAI GWGCWC 4 cut(s) 250, 920, 1029, 2098
BsiHKCI CYCGRG 2 cut(s) 77, 930
BsiSI CCGG 6 cut(s) 78, 137, 225, 658, 1694, 1998
BslFI GGGAC 4 cut(s) 521, 1129, 1186, 1877
BslI CCNNNNNNNGG 7 cut(s) 98, 143, 157, 743, 1423, 2014, 2212
BsmAI GTCTC 3 cut(s) 727, 1300, 2356
BsmFI GGGAC 4 cut(s) 521, 1129, 1186, 1877
BsmI GAATGC 2 cut(s) 944, 1837
Bso31I GGTCTC 3 cut(s) 727, 1300, 2356
BsoBI CYCGRG 2 cut(s) 77, 930
Bsp120I GGGCCC 1 cut(s) 817
Bsp1286I GDGCHC 5 cut(s) 250, 821, 920, 1029, 2098
Bsp1407I TGTACA 1 cut(s) 1660
BspCNI CTCAG 6 cut(s) 145, 538, 723, 863, 1444, 2169
BspHI TCATGA 1 cut(s) 2137
BspLI GGNNCC 5 cut(s) 552, 819, 1348, 1749, 2034
BspMAI CTGCAG 2 cut(s) 1474, 1605
BspMI ACCTGC 1 cut(s) 1759
BspPI GGATC 8 cut(s) 122, 545, 558, 1515, 1947, 2027, 2040, 2228
BspT107I GGYRCC 2 cut(s) 1346, 1747
BspTNI GGTCTC 3 cut(s) 727, 1300, 2356
BsrDI GCAATG 1 cut(s) 1098
BsrFI RCCGGY 2 cut(s) 136, 1997
BsrGI TGTACA 1 cut(s) 1660
BsrI ACTGG 4 cut(s) 870, 1402, 1675, 1917
BssAI RCCGGY 2 cut(s) 136, 1997
BssECI CCNNGG 6 cut(s) 77, 78, 285, 640, 1310, 1981
BssSI CACGAG 2 cut(s) 1227, 2009
BssT1I CCWWGG 2 cut(s) 640, 1981
Bst2BI CACGAG 2 cut(s) 1227, 2009
Bst2UI CCWGG 2 cut(s) 1311, 1323
Bst4CI ACNGT 6 cut(s) 455, 814, 1087, 1242, 1436, 1660
Bst6I CTCTTC 3 cut(s) 1713, 2178, 2207
BstAUI TGTACA 1 cut(s) 1660
BstC8I GCNNGC 4 cut(s) 979, 1050, 2214, 2346
BstDEI CTNAG 9 cut(s) 132, 546, 731, 850, 904, 1002, 1452, 1901, 2177
BstEII GGTNACC 2 cut(s) 1358, 1697
BstMAI GTCTC 3 cut(s) 727, 1300, 2356
BstMCI CGRYCG 1 cut(s) 2365
BstMWI GCNNNNNNNGC 3 cut(s) 28, 281, 1019
BstNI CCWGG 2 cut(s) 1311, 1323
BstPI GGTNACC 2 cut(s) 1358, 1697
BstSCI CCNGG 6 cut(s) 76, 77, 656, 1309, 1321, 1693
BstSFI CTRYAG 2 cut(s) 1470, 1601
BstSLI GKGCMC 2 cut(s) 821, 1029
BstV1I GCAGC 6 cut(s) 3, 106, 1064, 1828, 1831, 2034
BstX2I RGATCY 5 cut(s) 550, 693, 840, 1939, 2032
BstXI CCANNNNNNTGG 1 cut(s) 661
BstYI RGATCY 5 cut(s) 550, 693, 840, 1939, 2032
BtsI GCAGTG 1 cut(s) 1467
BtsIMutI CAGTG 7 cut(s) 52, 451, 819, 877, 1395, 1441, 1467
BveI ACCTGC 1 cut(s) 1759
Cac8I GCNNGC 4 cut(s) 979, 1050, 2214, 2346
CaiI CAGNNNCTG 1 cut(s) 857
CciI TCATGA 1 cut(s) 2137
Cfr10I RCCGGY 2 cut(s) 136, 1997
Cfr13I GGNCC 5 cut(s) 75, 145, 817, 818, 846
Cfr9I CCCGGG 1 cut(s) 77
Csp6I GTAC 7 cut(s) 369, 728, 894, 1378, 1661, 1748, 2321
CspAI ACCGGT 1 cut(s) 1997
CviQI GTAC 7 cut(s) 369, 728, 894, 1378, 1661, 1748, 2321
DdeI CTNAG 9 cut(s) 132, 546, 731, 850, 904, 1002, 1452, 1901, 2177
EaeI YGGCCR 2 cut(s) 1848, 1921
Eam1104I CTCTTC 3 cut(s) 1713, 2178, 2207
EarI CTCTTC 3 cut(s) 1713, 2178, 2207
Ecl136II GAGCTC 2 cut(s) 248, 918
Eco130I CCWWGG 2 cut(s) 640, 1981
Eco24I GRGCYC 3 cut(s) 250, 821, 920
Eco31I GGTCTC 3 cut(s) 727, 1300, 2356
Eco47I GGWCC 1 cut(s) 846
Eco53kI GAGCTC 2 cut(s) 248, 918
Eco57I CTGAAG 2 cut(s) 369, 879
Eco88I CYCGRG 2 cut(s) 77, 930
Eco91I GGTNACC 2 cut(s) 1358, 1697
EcoICRI GAGCTC 2 cut(s) 248, 918
EcoO65I GGTNACC 2 cut(s) 1358, 1697
EcoRII CCWGG 2 cut(s) 1309, 1321
EcoT14I CCWWGG 2 cut(s) 640, 1981
EcoT22I ATGCAT 2 cut(s) 946, 2251
EcoT38I GRGCYC 3 cut(s) 250, 821, 920
ErhI CCWWGG 2 cut(s) 640, 1981
FalI AAGNNNNNCTT 6 cut(s) 312, 344, 966, 998, 2175, 2207
FaqI GGGAC 4 cut(s) 521, 1129, 1186, 1877
FauI CCCGC 2 cut(s) 1284, 1488
FauNDI CATATG 1 cut(s) 1557
FblI GTMKAC 1 cut(s) 110
FriOI GRGCYC 3 cut(s) 250, 821, 920
FspBI CTAG 3 cut(s) 306, 1728, 1982
GsaI CCCAGC 1 cut(s) 101
GsuI CTGGAG 1 cut(s) 1535
HapII CCGG 6 cut(s) 78, 137, 225, 658, 1694, 1998
HincII GTYRAC 3 cut(s) 111, 1290, 1465
HindII GTYRAC 3 cut(s) 111, 1290, 1465
HindIII AAGCTT 1 cut(s) 1737
HinfI GANTC 3 cut(s) 534, 881, 1829
HpaII CCGG 6 cut(s) 78, 137, 225, 658, 1694, 1998
Hpy188I TCNGA 5 cut(s) 349, 1629, 1785, 2178, 2408
Hpy188III TCNNGA 8 cut(s) 356, 830, 1222, 1305, 1451, 1712, 2089, 2138
Hpy99I CGWCG 2 cut(s) 115, 2363
HpyCH4III ACNGT 6 cut(s) 455, 814, 1087, 1242, 1436, 1660
HpyCH4IV ACGT 1 cut(s) 2358
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 281, 1019
HpyF3I CTNAG 9 cut(s) 132, 546, 731, 850, 904, 1002, 1452, 1901, 2177
HpySE526I ACGT 1 cut(s) 2358
KpnI GGTACC 1 cut(s) 1751
LmnI GCTCC 2 cut(s) 784, 2044
Lsp1109I GCAGC 6 cut(s) 3, 106, 1064, 1828, 1831, 2034
LweI GCATC 7 cut(s) 931, 1310, 1396, 1585, 1705, 1762, 2236
MaeI CTAG 3 cut(s) 306, 1728, 1982
MaeII ACGT 1 cut(s) 2358
MaeIII GTNAC 8 cut(s) 262, 619, 808, 969, 1358, 1697, 1993, 2336
MboII GAAGA 8 cut(s) 850, 1469, 1582, 1700, 2141, 2165, 2194, 2306
MfeI CAATTG 1 cut(s) 1618
MflI RGATCY 5 cut(s) 550, 693, 840, 1939, 2032
MhlI GDGCHC 5 cut(s) 250, 821, 920, 1029, 2098
MlsI TGGCCA 2 cut(s) 1850, 1923
MluNI TGGCCA 2 cut(s) 1850, 1923
MlyI GAGTC 2 cut(s) 543, 1838
MmeI TCCRAC 4 cut(s) 1659, 1930, 2230, 2379
Mox20I TGGCCA 2 cut(s) 1850, 1923
Mph1103I ATGCAT 2 cut(s) 946, 2251
MroXI GAANNNNTTC 1 cut(s) 429
MscI TGGCCA 2 cut(s) 1850, 1923
MslI CAYNNNNRTG 4 cut(s) 36, 269, 889, 1356
Msp20I TGGCCA 2 cut(s) 1850, 1923
MspA1I CMGCKG 4 cut(s) 97, 1279, 1513, 2212
MspI CCGG 6 cut(s) 78, 137, 225, 658, 1694, 1998
MspR9I CCNGG 6 cut(s) 78, 79, 658, 1311, 1323, 1695
MunI CAATTG 1 cut(s) 1618
Mva1269I GAATGC 2 cut(s) 944, 1837
MvaI CCWGG 2 cut(s) 1311, 1323
MwoI GCNNNNNNNGC 3 cut(s) 28, 281, 1019
NciI CCSGG 4 cut(s) 78, 79, 658, 1695
NdeI CATATG 1 cut(s) 1557
NlaIV GGNNCC 5 cut(s) 552, 819, 1348, 1749, 2034
NmeAIII GCCGAG 2 cut(s) 310, 1837
NmuCI GTSAC 5 cut(s) 262, 619, 969, 1358, 2336
NsiI ATGCAT 2 cut(s) 946, 2251
PaeR7I CTCGAG 1 cut(s) 930
PagI TCATGA 1 cut(s) 2137
PcsI WCGNNNNNNNCGW 1 cut(s) 116
PctI GAATGC 2 cut(s) 944, 1837
PdmI GAANNNNTTC 1 cut(s) 429
PfeI GAWTC 1 cut(s) 881
PflMI CCANNNNNTGG 2 cut(s) 1423, 2212
PinAI ACCGGT 1 cut(s) 1997
Ple19I CGATCG 1 cut(s) 2365
PleI GAGTC 2 cut(s) 542, 1837
PpsI GAGTC 2 cut(s) 542, 1837
Psp124BI GAGCTC 2 cut(s) 250, 920
Psp6I CCWGG 2 cut(s) 1309, 1321
PspEI GGTNACC 2 cut(s) 1358, 1697
PspFI CCCAGC 1 cut(s) 97
PspGI CCWGG 2 cut(s) 1309, 1321
PspN4I GGNNCC 5 cut(s) 552, 819, 1348, 1749, 2034
PspOMI GGGCCC 1 cut(s) 817
PspPI GGNCC 5 cut(s) 75, 145, 817, 818, 846
PspXI VCTCGAGB 1 cut(s) 930
PstI CTGCAG 2 cut(s) 1474, 1605
PstNI CAGNNNCTG 1 cut(s) 857
PsuI RGATCY 5 cut(s) 550, 693, 840, 1939, 2032
PvuI CGATCG 1 cut(s) 2365
PvuII CAGCTG 3 cut(s) 97, 1513, 2212
RsaI GTAC 7 cut(s) 370, 729, 895, 1379, 1662, 1749, 2322
RsaNI GTAC 7 cut(s) 369, 728, 894, 1378, 1661, 1748, 2321
RseI CAYNNNNRTG 4 cut(s) 36, 269, 889, 1356
SacI GAGCTC 2 cut(s) 250, 920
SalI GTCGAC 1 cut(s) 109
Sau96I GGNCC 5 cut(s) 75, 145, 817, 818, 846
ScaI AGTACT 3 cut(s) 729, 1379, 2322
SchI GAGTC 2 cut(s) 543, 1838
ScrFI CCNGG 6 cut(s) 78, 79, 658, 1311, 1323, 1695
SduI GDGCHC 5 cut(s) 250, 821, 920, 1029, 2098
SfaNI GCATC 7 cut(s) 931, 1310, 1396, 1585, 1705, 1762, 2236
SfcI CTRYAG 2 cut(s) 1470, 1601
Sfr274I CTCGAG 1 cut(s) 930
SinI GGWCC 1 cut(s) 846
SlaI CTCGAG 1 cut(s) 930
SmaI CCCGGG 1 cut(s) 79
SmiMI CAYNNNNRTG 4 cut(s) 36, 269, 889, 1356
SmlI CTYRAG 2 cut(s) 930, 1721
SmoI CTYRAG 2 cut(s) 930, 1721
SspI AATATT 1 cut(s) 202
SspMI CTAG 3 cut(s) 306, 1728, 1982
SstI GAGCTC 2 cut(s) 250, 920
StyD4I CCNGG 6 cut(s) 76, 77, 656, 1309, 1321, 1693
StyI CCWWGG 2 cut(s) 640, 1981
TaaI ACNGT 6 cut(s) 455, 814, 1087, 1242, 1436, 1660
TaiI ACGT 1 cut(s) 2361
TaqI TCGA 9 cut(s) 5, 110, 244, 931, 1259, 1304, 1382, 2361, 2365
TatI WGTACW 4 cut(s) 727, 1377, 1660, 2320
TauI GCSGC 4 cut(s) 22, 76, 94, 150
TfiI GAWTC 1 cut(s) 881
TscAI CASTG 7 cut(s) 52, 458, 819, 877, 1402, 1441, 1474
TseFI GTSAC 5 cut(s) 262, 619, 969, 1358, 2336
TseI GCWGC 6 cut(s) 16, 94, 1052, 1816, 1819, 2047
Tsp45I GTSAC 5 cut(s) 262, 619, 969, 1358, 2336
TspDTI ATGAA 9 cut(s) 375, 422, 894, 1434, 2016, 2141, 2285, 2291, 2383
TspGWI ACGGA 1 cut(s) 1867
TspMI CCCGGG 1 cut(s) 77
TspRI CASTG 7 cut(s) 52, 458, 819, 877, 1402, 1441, 1474
Van91I CCANNNNNTGG 2 cut(s) 1423, 2212
VneI GTGCAC 1 cut(s) 1025
VpaK11BI GGWCC 1 cut(s) 846
XapI RAATTY 4 cut(s) 342, 1079, 1411, 1960
XcmI CCANNNNNNNNNTGG 1 cut(s) 444
XhoI CTCGAG 1 cut(s) 930
XmaI CCCGGG 1 cut(s) 77
XmaJI CCTAGG 1 cut(s) 1981
XmiI GTMKAC 1 cut(s) 110
XmnI GAANNNNTTC 1 cut(s) 429
XspI CTAG 3 cut(s) 306, 1728, 1982
ZrmI AGTACT 3 cut(s) 729, 1379, 2322
Zsp2I ATGCAT 2 cut(s) 946, 2251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.