pycom03g03070

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000324
Physical Location & Seq
Forward (+)
2407271 .. 2415182
7912 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g03070.13

Sequence Viewer

Length: 4386 bp
ATGGTGGTCATGGGTATATCCCAAAAGCTTGAATTCCACCCACTCAAAAAATTCTTCAAATGTGAGGTATTTCCAAGTCCCCACTTCTTCCACTCCAAGGTCCTTCCACCCTCTCTCTCCCCTCCCTGCTCATCACTCTCTTCGGATCCCACTCTCTCTGCAAATCCCAGATTCCCAATCCCCATCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTATATATATATACACACACACACACACACAATCCATTCCGTCAGGGAATCAAAATCCCATTTCTTACATTCACATACAAAATCCACAAAAATATATTTATAGATCTGCTGCTCCTCCTCCCATGGCTTCCACCGGGCCAAATCCGCCGCCACAGCAGCAACCGCAGCCCTTCGACATGCAGAAATTCTTTAAACCCACAAACCCAGCTGCTCTCACCGCCCAAACCTCAACCCCCGCCCTTTCAAACCAAAACCCTAACCCTAATTTGAGTTCCTCCTCGTTCCCAGTCCCGCCCGCTTCTTTCCCTCCTCCGACGGGCCCCTACTCGTACCCGCCCCAAACGGCACCGTTTCACCACCATCAGTTTCAATACCTCCCCCAACCGCAGCAGCCCCACCCCCAAATCCAATACTCTCCGCAAGACCACCACTTGCTCCAGCAGAGGTCTCTCTCGTTCCCCATCCCGCCCCTCCAACCCCCTGGTAATTACAACATTGCCACTCCCACTTCCAACCCCAACGGAACCGGCAGTGGTAATTCCAATTCGAGCCCCAATTCCGGTGCTCGAATCATGGCGCTTCTTGGTGCTCCGTCAGGAAATCTAGAGCCCGAGTTGTCGACTCCTCCAGGTGTCTCAATGCCGCCCCCTCTCCCAATGGGGATTCAACCCACTGGTCCGATTCGAATGCCCAGCAATAAGCTACCGAAAGGCCGGCATTTGGTTGGCAATAACGTGGTTTACGATGTGGACGTTAGGTTGCAGGACATGGCTTTCTTTGCCGAGGATGTTCACCTTTTGGCTAGTGTTAGTGTAGAAGGACGACTCTTTGTATGGAAAATTTCAGAAGGTCCAGATGAAGAAGGTACGCCACAAATCACTGGAAAGGTTGTGATTGCTATTCAAATAGTTGGAGAGGGGGAAGCTGTTCATCCACGAGTTTGTTGGCACTGTCATAAACAAGAGGTTTTGGTGGTTGGGTTTGGAAAGCGTGTACTAAGAATTGATACTACTAAAGTTGTGAAGGGTGAACCCCCTTCTGCTGATGAGCCTCTCAAATGTCCTGTTGAAAAGCTGATTGATGGAGTCCAGTTTGTCGGTAAACATGATGGAGAAGTGACCGACTTGTCAATGTGCCAATGGATGACCACCCGTCTGGTTTCTGCTTCTATGGATGGAACAATAAAGATCTGGGAAGATCGCAAAGCTCAACCTCTTTTAGTATTGAGACCTTACGATGGGCAACCTGTTTATTCAGCTACATTTGTGACAGCTCCTGACAGGCCAGATCATATTATACTTATCACAGTGGGGCCACTAAATCGGGAAGTGAAGATCTGGTCCTCAGCGAGTGAAGAAGGCTGGCTGCTTCCCAGTGATGCTGAATCATGGAAATGTACCCAGACATTAGAGTTGAAGAGTTCTTCTGGACCCCGAGTCGAGGAGGCATTCTTTAATCAAGTCATAGCATTGTCACAAGCTGGCCTTCTCTTACTTGCAAATGCTAAGAAGAATGCTATATATGCTGTACACTTAGAATTTGGTCCTGATCCAGCAGCATCGCGTATGGATTACATTGCAGAATTTACCGTTACCATGCCTATTTTAAGTTTTACTGGGACAAGTATATCTCCTCATGGTGAACAGATTGTTCAGGTTTATTGTGTCCAGACTCTGGCCATTCAGCAGTATGCTTTGGAATTATCAAAGTGCTTGCCTCCACCACTGGATAATGTTGGATTAGAAAAGTCAGATTCCAATATCTCACACGATGCAATTGGGGCTGAAGGATATGCTTTGAATCTATCTGGAAGTAAACCCACAGAGGTGCTGCTAGCCAATTCATCACGTAGACCAGCCGTACATGAAAGTAGTTCTGAGGGTGCAGCTGCCATGAGGTATCCTGTAAGCTCTAATTCTGTTGAGGCAAGCACTTCAAAAGATATTACCACTTCAAGTACAGAATCAAGACCTGTTTCATTGGCATCGTCAACTAGTGATTCTGCTGTTGTTTTTGTTGCATCACCATCTATTCCCTTGAGTCCTAGGTTGTCCAGGAAACTTTCTGGTATAAGAAGTCCAGCAGATAGATCTGAGCCGGGTCGCACACTTAATGACCATGTTGGAGACCAACAAGTCAATGATTACTCTGTTGACAGGCAAATGATACCTGCTCGTTCAAACGTGTCAGATGTGCCAGCAGTGGATGATGACTCGAGGAATGATGAGCCTAAAGTTGGACAAGATGATTTATCTAGTGTGCTCAATCCTCCTATCATGTTCAAACATCCAACCCATCTAATAACTCCCTCTGAGATTTTAATGGCTGCTTCATCTTCTGAAGGAGCTAATACCGTTGACTGCAAGAGTGAGGGGGAGGGAAATATCCAAGATGTTCTTGTTAACAGTGATGTAGGTAATTCTGAGGTGGAGGTTAAAGTAGTGGGTGAAATTAGATCTACTCAAATTGATGAGTTTGTCTCTCAAGGAGAACCACAAAATGCTGTCTCAGAAAATAAAGAAAAATACTTTTGCTCCCAGGCCGGATCAGATCTTGGAATTGAAATGGCCCGAGAATGCTGTGCGATACCAGCAGAAACTTATGTTATGGATGAAGCTCGGCCAGTTGATGGTGGCAGTGTGACAGAACCACCAGGCCAATCTCATGCTGGAGACGAAGACCAGGACTCTGCAAAAGATGTTTCTGCGTCATTATCCTCCCCAACAGTTTTGCAATCGCAGACATCAAATACAAAAGTGAAAAAACAGAAGTGGAAAAATTCACAAGCATCAGGTTCATCGTTACCATCAGCAAGTATGACCAATTCCATAGATTCCACCAATGAACATGGTGGGAGTTCAAGCCTACCCTCTGCAGAAGCAGCATACCCGCAAATTATGGCCATGCAGGATACGGTTAATCAGCTACTGACCATGCAGAAAGAAATGCAAAAGCAGATAACAATGATGGTCACAGCCCCCGTTACAAAGGAAGGGAGGAGATTGGAAGCTGCTCTTGGGAAAAGTATGGAGAAGGCTTTAAAGGCCAACAATGATGCTCTATGGGCTCGTTTTCAAGAAGAGAATGCAAAGAATGAGAAGTTATTGCGAGACCGTAATCAGCAAATAACCAGTTTGATAAATAACTTAATGAACAAGGACTTTCCAGTCATGTTGGAGAAAGTGGTGAAGAAGGAATCATCTGTGATTGGACCAGCCGTTGTTCGTGCTATAACTCCAGCTATTGAGAAGGCAATACCTTTGGCTATTTCTGATTCCTTCCAGAGAGGAGTGGGTGACAAGACTGTTAACCAATTGGAGAAATCTGTTAGCTCAAAACTTGAAGCTACTGTTTCCAGGCAAATTCAGGCGCAGTTTCAAACTTCTGGCAAACAAGCTCTTCAGGATGCTCTTAAGTCTAGTATGGAAGCTTCAGTGGTACCTGCCTTTGAGAAGTCATGTAAGGCCATGTTTGAGCAAGTAGATGCTACGTTCCAGAAAGGAATGGTTGAACACACAACTGTGGCCCAGCAGCACTTTGACTCCACACATTCGCCATTGGCACTGGCTCTAAGGGAAGCTATTAATTCTGCATCATCGGTTACTCAAACCCTAAGCGGAGAAGTGGCTGAGGGTCAACGTAAGCTCATAGCTCTTGCACGAGGAAACTCAAGTGCAGTAAATCCTCTGGTCACACAACTCACTAATGGACCTTTGGGTGGTCTCCATGAGAAGGTTGAGGTACCTTTGGATCCAAAGAATGAGCTATCAAGGCTGGCATCTGAACGCAAGTACGAGGAGGCTTTCACGGCAGCTCTGCAAAGAAGCGATGTTTCCATCGTATCATGGTTATGCCATCAGGTTGATCTGCGTGGGATATTGCTGTTGAATCCTGTTCCTCTTAGCCAAGGTGTGCTTCTTTCTCTTTTGCAACAGCTGGCATGTGATATCAGCAATGATACACCCAGAAAAGTTGCGTGGATGACGGATGTGGCGGGTGCCATAAACCCGGCTAACCAAATGATTGCGATGCACGGTCGTCCCATATTTGAGCAAGTTTATAGTATATTGCACCATCAACATGCCTTGCCCACGATCAACAGTGCCGAACACACTAGTATCCGACTTCTCATGCATGTCATCAACTCCATTATGATGGCCTGTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

1462

Amino Acids

158.27

Weight (kDa)

5.83

Isoelectric Point (pI)

46.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 1342, 2351, 3383
Acc36I ACCTGC 2 cut(s) 2395, 3667
Acc65I GGTACC 2 cut(s) 3655, 3958
AccB1I GGYRCC 4 cut(s) 562, 3655, 3958, 4214
AccB7I CCANNNNNTGG 2 cut(s) 1891, 2846
AccI GTMKAC 2 cut(s) 836, 2068
AccII CGCG 1 cut(s) 1780
AclWI GGATC 6 cut(s) 140, 153, 1760, 2770, 3962, 3975
AcoI YGGCCR 3 cut(s) 1893, 2837, 3117
AcsI RAATTY 8 cut(s) 32, 50, 401, 1056, 1754, 1799, 2995, 3579
AcuI CTGAAG 4 cut(s) 2022, 2577, 3602, 3633
AflII CTTAAG 1 cut(s) 3629
AflIII ACRYGT 1 cut(s) 2400
AhdI GACNNNNNGTC 2 cut(s) 1368, 1652
AhlI ACTAGT 2 cut(s) 2210, 4331
AjnI CCWGG 7 cut(s) 697, 844, 2270, 2754, 2869, 2898, 3572
AjuI GAANNNNNNNTTGG 4 cut(s) 3216, 3248, 4116, 4148
AleI CACNNNNGTG 2 cut(s) 2042, 3737
Alw21I GWGCWC 3 cut(s) 784, 808, 2481
Alw26I GTCTC 9 cut(s) 669, 856, 1438, 2337, 2701, 2728, 2883, 3321, 3944
AlwI GGATC 6 cut(s) 140, 153, 1760, 2770, 3962, 3975
AlwNI CAGNNNCTG 3 cut(s) 1493, 1891, 3145
Ama87I CYCGRG 4 cut(s) 827, 1650, 2431, 2787
ApaI GGGCCC 1 cut(s) 539
ApoI RAATTY 8 cut(s) 32, 50, 401, 1056, 1754, 1799, 2995, 3579
AseI ATTAAT 1 cut(s) 3801
Asp700I GAANNNNTTC 1 cut(s) 1143
Asp718I GGTACC 2 cut(s) 3655, 3958
AspA2I CCTAGG 1 cut(s) 2261
AspLEI GCGC 2 cut(s) 796, 3589
AsuC2I CCSGG 3 cut(s) 352, 2316, 4226
AsuHPI GGTGA 9 cut(s) 424, 563, 1001, 1256, 1868, 2232, 2675, 3415, 3524
AsuII TTCGAA 1 cut(s) 901
AsuNHI GCTAGC 1 cut(s) 2050
AvaI CYCGRG 4 cut(s) 827, 1650, 2431, 2787
AvaII GGWCC 8 cut(s) 100, 893, 1067, 1557, 1646, 1760, 3428, 3926
AvrII CCTAGG 1 cut(s) 2261
BaeGI GKGCMC 1 cut(s) 539
BaeI ACNNNNGTAYC 2 cut(s) 4318, 4351
BalI TGGCCA 2 cut(s) 1895, 3119
BamHI GGATCC 2 cut(s) 145, 3967
BanI GGYRCC 4 cut(s) 562, 3655, 3958, 4214
BanII GRGCYC 4 cut(s) 539, 770, 828, 3286
BarI GAAGNNNNNNTAC 2 cut(s) 3631, 3663
BauI CACGAG 2 cut(s) 1152, 3876
BbsI GAAGAC 1 cut(s) 2901
Bbv12I GWGCWC 3 cut(s) 784, 808, 2481
BbvCI CCTCAGC 2 cut(s) 1561, 3846
BceAI ACGGC 4 cut(s) 576, 2060, 3419, 4041
BcgI CGANNNNNNTGC 2 cut(s) 886, 920
BciT130I CCWGG 7 cut(s) 699, 846, 2272, 2756, 2871, 2900, 3574
BciVI GTATCC 3 cut(s) 2127, 3121, 4346
BcnI CCSGG 3 cut(s) 352, 2316, 4226
BcoDI GTCTC 9 cut(s) 669, 856, 1438, 2337, 2701, 2728, 2883, 3321, 3944
BcuI ACTAGT 2 cut(s) 2210, 4331
BfaI CTAG 8 cut(s) 821, 1020, 2051, 2211, 2262, 2472, 3636, 4332
BfmI CTRYAG 1 cut(s) 3090
BfoI RGCGCY 1 cut(s) 797
BfrI CTTAAG 1 cut(s) 3629
BfuAI ACCTGC 2 cut(s) 2395, 3667
BfuI GTATCC 3 cut(s) 2127, 3121, 4346
BglII AGATCT 6 cut(s) 320, 1404, 1551, 2306, 2672, 2767
BlnI CCTAGG 1 cut(s) 2261
Bme18I GGWCC 8 cut(s) 100, 893, 1067, 1557, 1646, 1760, 3428, 3926
BmeRI GACNNNNNGTC 2 cut(s) 1368, 1652
BmeT110I CYCGRG 4 cut(s) 827, 1650, 2431, 2787
BmrI ACTGGG 3 cut(s) 497, 1584, 1842
BmtI GCTAGC 1 cut(s) 2054
BmuI ACTGGG 3 cut(s) 497, 1584, 1842
BpiI GAAGAC 1 cut(s) 2901
BplI GAGNNNNNCTC 2 cut(s) 2681, 2713
BpmI CTGGAG 4 cut(s) 638, 828, 2907, 3438
Bpu10I CCTNAGC 3 cut(s) 1561, 3830, 3846
Bpu14I TTCGAA 1 cut(s) 901
BpuEI CTTGAG 3 cut(s) 2275, 2685, 3871
BpuMI CCSGG 3 cut(s) 352, 2316, 4226
BsaAI YACGTR 1 cut(s) 2066
BsaI GGTCTC 5 cut(s) 669, 1438, 2337, 3321, 3944
BsaJI CCNNGG 7 cut(s) 96, 339, 697, 999, 2261, 2754, 4123
BsaWI WCCGGW 1 cut(s) 776
BsaXI ACNNNNNCTCC 4 cut(s) 2735, 2765, 3743, 3773
Bse118I RCCGGY 2 cut(s) 743, 930
Bse3DI GCAATG 3 cut(s) 711, 1791, 4177
BseBI CCWGG 7 cut(s) 699, 846, 2272, 2756, 2871, 2900, 3574
BseDI CCNNGG 7 cut(s) 96, 339, 697, 999, 2261, 2754, 4123
BseMI GCAATG 3 cut(s) 711, 1791, 4177
BseMII CTCAG 7 cut(s) 1575, 2085, 2301, 2520, 2631, 2739, 3837
BseSI GKGCMC 1 cut(s) 539
BseYI CCCAGC 3 cut(s) 421, 908, 3744
BsgI GTGCAG 2 cut(s) 2121, 3912
Bsh1236I CGCG 1 cut(s) 1780
Bsh1285I CGRYCG 1 cut(s) 4255
BshNI GGYRCC 4 cut(s) 562, 3655, 3958, 4214
BsiEI CGRYCG 1 cut(s) 4255
BsiHKAI GWGCWC 3 cut(s) 784, 808, 2481
BsiHKCI CYCGRG 4 cut(s) 827, 1650, 2431, 2787
BsiSI CCGG 7 cut(s) 351, 744, 777, 931, 2315, 2760, 4226
BslFI GGGAC 4 cut(s) 63, 491, 1849, 4242
BsmAI GTCTC 9 cut(s) 669, 856, 1438, 2337, 2701, 2728, 2883, 3321, 3944
BsmBI CGTCTC 1 cut(s) 2883
BsmFI GGGAC 4 cut(s) 63, 491, 1849, 4242
BsmI GAATGC 5 cut(s) 909, 1664, 1735, 2798, 3307
Bso31I GGTCTC 5 cut(s) 669, 1438, 2337, 3321, 3944
BsoBI CYCGRG 4 cut(s) 827, 1650, 2431, 2787
Bsp119I TTCGAA 1 cut(s) 901
Bsp120I GGGCCC 1 cut(s) 535
Bsp1286I GDGCHC 7 cut(s) 539, 770, 784, 808, 828, 2481, 3286
Bsp1407I TGTACA 1 cut(s) 1744
Bsp19I CCATGG 1 cut(s) 339
BspCNI CTCAG 7 cut(s) 1574, 2086, 2302, 2521, 2632, 2738, 3838
BspFNI CGCG 1 cut(s) 1780
BspMAI CTGCAG 1 cut(s) 3094
BspMI ACCTGC 2 cut(s) 2395, 3667
BspOI GCTAGC 1 cut(s) 2054
BspPI GGATC 6 cut(s) 140, 153, 1760, 2770, 3962, 3975
BspQI GCTCTTC 1 cut(s) 3621
BspT104I TTCGAA 1 cut(s) 901
BspT107I GGYRCC 4 cut(s) 562, 3655, 3958, 4214
BspTI CTTAAG 1 cut(s) 3629
BspTNI GGTCTC 5 cut(s) 669, 1438, 2337, 3321, 3944
BsrDI GCAATG 3 cut(s) 711, 1791, 4177
BsrFI RCCGGY 2 cut(s) 743, 930
BsrGI TGTACA 1 cut(s) 1744
BssAI RCCGGY 2 cut(s) 743, 930
BssECI CCNNGG 7 cut(s) 96, 339, 697, 999, 2261, 2754, 4123
BssSI CACGAG 2 cut(s) 1152, 3876
BssT1I CCWWGG 4 cut(s) 96, 339, 2261, 4123
Bst2BI CACGAG 2 cut(s) 1152, 3876
Bst2UI CCWGG 7 cut(s) 699, 846, 2272, 2756, 2871, 2900, 3574
Bst6I CTCTTC 4 cut(s) 145, 1628, 3291, 3621
BstAFI CTTAAG 1 cut(s) 3629
BstAUI TGTACA 1 cut(s) 1744
BstBAI YACGTR 1 cut(s) 2066
BstBI TTCGAA 1 cut(s) 901
BstDSI CCRYGG 1 cut(s) 339
BstFNI CGCG 1 cut(s) 1780
BstH2I RGCGCY 1 cut(s) 797
BstHHI GCGC 2 cut(s) 796, 3589
BstMAI GTCTC 9 cut(s) 669, 856, 1438, 2337, 2701, 2728, 2883, 3321, 3944
BstMCI CGRYCG 1 cut(s) 4255
BstNI CCWGG 7 cut(s) 699, 846, 2272, 2756, 2871, 2900, 3574
BstNSI RCATGY 4 cut(s) 397, 4161, 4301, 4355
BstSFI CTRYAG 1 cut(s) 3090
BstSLI GKGCMC 1 cut(s) 539
BstUI CGCG 1 cut(s) 1780
BstV2I GAAGAC 1 cut(s) 2901
BstX2I RGATCY 8 cut(s) 145, 320, 1404, 1551, 2306, 2672, 2767, 3967
BstXI CCANNNNNNTGG 3 cut(s) 698, 1372, 4372
BstYI RGATCY 8 cut(s) 145, 320, 1404, 1551, 2306, 2672, 2767, 3967
BsuI GTATCC 3 cut(s) 2127, 3121, 4346
BtgI CCRYGG 1 cut(s) 339
BtgZI GCGATG 3 cut(s) 1761, 4059, 4259
BtsI GCAGTG 3 cut(s) 754, 2424, 2860
BveI ACCTGC 2 cut(s) 2395, 3667
CaiI CAGNNNCTG 3 cut(s) 1493, 1891, 3145
CfoI GCGC 2 cut(s) 796, 3589
Cfr10I RCCGGY 2 cut(s) 743, 930
CseI GACGC 1 cut(s) 2913
DraI TTTAAA 2 cut(s) 409, 3258
DrdI GACNNNNNNGTC 3 cut(s) 1342, 2351, 3383
DriI GACNNNNNGTC 2 cut(s) 1368, 1652
DseDI GACNNNNNNGTC 3 cut(s) 1342, 2351, 3383
EaeI YGGCCR 3 cut(s) 1893, 2837, 3117
Eam1104I CTCTTC 4 cut(s) 145, 1628, 3291, 3621
Eam1105I GACNNNNNGTC 2 cut(s) 1368, 1652
EarI CTCTTC 4 cut(s) 145, 1628, 3291, 3621
EciI GGCGGA 1 cut(s) 351
Eco130I CCWWGG 4 cut(s) 96, 339, 2261, 4123
Eco24I GRGCYC 4 cut(s) 539, 770, 828, 3286
Eco31I GGTCTC 5 cut(s) 669, 1438, 2337, 3321, 3944
Eco32I GATATC 1 cut(s) 4165
Eco47I GGWCC 8 cut(s) 100, 893, 1067, 1557, 1646, 1760, 3428, 3926
Eco57I CTGAAG 4 cut(s) 2022, 2577, 3602, 3633
Eco88I CYCGRG 4 cut(s) 827, 1650, 2431, 2787
EcoO109I RGGNCCY 2 cut(s) 100, 536
EcoRI GAATTC 1 cut(s) 32
EcoRII CCWGG 7 cut(s) 697, 844, 2270, 2754, 2869, 2898, 3572
EcoRV GATATC 1 cut(s) 4165
EcoT14I CCWWGG 4 cut(s) 96, 339, 2261, 4123
EcoT22I ATGCAT 1 cut(s) 4353
EcoT38I GRGCYC 4 cut(s) 539, 770, 828, 3286
ErhI CCWWGG 4 cut(s) 96, 339, 2261, 4123
Esp3I CGTCTC 1 cut(s) 2883
FalI AAGNNNNNCTT 8 cut(s) 1686, 1718, 2598, 2630, 3216, 3248, 4116, 4148
FaqI GGGAC 4 cut(s) 63, 491, 1849, 4242
FauI CCCGC 7 cut(s) 460, 516, 520, 558, 690, 3114, 4204
FblI GTMKAC 2 cut(s) 836, 2068
FriOI GRGCYC 4 cut(s) 539, 770, 828, 3286
FspBI CTAG 8 cut(s) 821, 1020, 2051, 2211, 2262, 2472, 3636, 4332
GlaI GCGC 2 cut(s) 795, 3588
GsaI CCCAGC 3 cut(s) 425, 912, 3748
GsuI CTGGAG 4 cut(s) 638, 828, 2907, 3438
HaeII RGCGCY 1 cut(s) 797
HapII CCGG 7 cut(s) 351, 744, 777, 931, 2315, 2760, 4226
HgaI GACGC 1 cut(s) 2913
HhaI GCGC 2 cut(s) 796, 3589
Hin6I GCGC 2 cut(s) 794, 3587
HinP1I GCGC 2 cut(s) 794, 3587
HincII GTYRAC 7 cut(s) 837, 2208, 2371, 2575, 2620, 3526, 3854
HindII GTYRAC 7 cut(s) 837, 2208, 2371, 2575, 2620, 3526, 3854
HindIII AAGCTT 2 cut(s) 26, 3645
HpaI GTTAAC 2 cut(s) 2620, 3526
HpaII CCGG 7 cut(s) 351, 744, 777, 931, 2315, 2760, 4226
HphI GGTGA 9 cut(s) 424, 563, 1001, 1256, 1868, 2232, 2675, 3415, 3524
Hpy99I CGWCG 1 cut(s) 535
HpyCH4IV ACGT 6 cut(s) 951, 969, 2065, 2400, 3707, 3856
HpySE526I ACGT 6 cut(s) 951, 969, 2065, 2400, 3707, 3856
HspAI GCGC 2 cut(s) 794, 3587
KpnI GGTACC 2 cut(s) 3659, 3962
KroI GCCGGC 1 cut(s) 930
KroNI GCCGGC 1 cut(s) 932
KspAI GTTAAC 2 cut(s) 2620, 3526
LguI GCTCTTC 1 cut(s) 3621
LmnI GCTCC 6 cut(s) 334, 657, 811, 1495, 2561, 2756
MaeI CTAG 8 cut(s) 821, 1020, 2051, 2211, 2262, 2472, 3636, 4332
MaeII ACGT 6 cut(s) 951, 969, 2065, 2400, 3707, 3856
MfeI CAATTG 2 cut(s) 1992, 3530
MflI RGATCY 8 cut(s) 145, 320, 1404, 1551, 2306, 2672, 2767, 3967
MhlI GDGCHC 7 cut(s) 539, 770, 784, 808, 828, 2481, 3286
MlsI TGGCCA 2 cut(s) 1895, 3119
MluNI TGGCCA 2 cut(s) 1895, 3119
MlyI GAGTC 9 cut(s) 832, 1035, 1311, 1662, 1882, 2266, 2423, 2897, 3752
Mox20I TGGCCA 2 cut(s) 1895, 3119
Mph1103I ATGCAT 1 cut(s) 4353
MroNI GCCGGC 1 cut(s) 930
MroXI GAANNNNTTC 1 cut(s) 1143
MscI TGGCCA 2 cut(s) 1895, 3119
MslI CAYNNNNRTG 6 cut(s) 1609, 2042, 3737, 4066, 4296, 4370
Msp20I TGGCCA 2 cut(s) 1895, 3119
MspA1I CMGCKG 3 cut(s) 425, 2105, 4153
MspCI CTTAAG 1 cut(s) 3629
MspI CCGG 7 cut(s) 351, 744, 777, 931, 2315, 2760, 4226
MunI CAATTG 2 cut(s) 1992, 3530
Mva1269I GAATGC 5 cut(s) 909, 1664, 1735, 2798, 3307
MvaI CCWGG 7 cut(s) 699, 846, 2272, 2756, 2871, 2900, 3574
MvnI CGCG 1 cut(s) 1780
NaeI GCCGGC 1 cut(s) 932
NciI CCSGG 3 cut(s) 352, 2316, 4226
NcoI CCATGG 1 cut(s) 339
NgoMIV GCCGGC 1 cut(s) 930
NheI GCTAGC 1 cut(s) 2050
NmeAIII GCCGAG 2 cut(s) 1024, 2815
NmuCI GTSAC 7 cut(s) 1333, 1483, 1689, 2857, 3187, 3512, 3907
NsiI ATGCAT 1 cut(s) 4353
NspI RCATGY 4 cut(s) 397, 4161, 4301, 4355
NspV TTCGAA 1 cut(s) 901
OliI CACNNNNGTG 2 cut(s) 2042, 3737
PaeR7I CTCGAG 1 cut(s) 2431
PciSI GCTCTTC 1 cut(s) 3621
PcsI WCGNNNNNNNCGW 2 cut(s) 957, 966
PctI GAATGC 5 cut(s) 909, 1664, 1735, 2798, 3307
PdiI GCCGGC 1 cut(s) 932
PdmI GAANNNNTTC 1 cut(s) 1143
PflMI CCANNNNNTGG 2 cut(s) 1891, 2846
PfoI TCCNGGA 1 cut(s) 2270
PleI GAGTC 9 cut(s) 832, 1035, 1310, 1661, 1882, 2265, 2423, 2897, 3752
PpsI GAGTC 9 cut(s) 832, 1035, 1310, 1661, 1882, 2265, 2423, 2897, 3752
Ppu21I YACGTR 1 cut(s) 2066
PpuMI RGGWCCY 1 cut(s) 100
PshBI ATTAAT 1 cut(s) 3801
Psp5II RGGWCCY 1 cut(s) 100
Psp6I CCWGG 7 cut(s) 697, 844, 2270, 2754, 2869, 2898, 3572
PspFI CCCAGC 3 cut(s) 421, 908, 3744
PspGI CCWGG 7 cut(s) 697, 844, 2270, 2754, 2869, 2898, 3572
PspOMI GGGCCC 1 cut(s) 535
PspPPI RGGWCCY 1 cut(s) 100
PspXI VCTCGAGB 1 cut(s) 2431
PstI CTGCAG 1 cut(s) 3094
PstNI CAGNNNCTG 3 cut(s) 1493, 1891, 3145
PsuI RGATCY 8 cut(s) 145, 320, 1404, 1551, 2306, 2672, 2767, 3967
PvuII CAGCTG 3 cut(s) 425, 2105, 4153
RseI CAYNNNNRTG 6 cut(s) 1609, 2042, 3737, 4066, 4296, 4370
SalI GTCGAC 1 cut(s) 835
SapI GCTCTTC 1 cut(s) 3621
SchI GAGTC 9 cut(s) 832, 1035, 1311, 1662, 1882, 2266, 2423, 2897, 3752
SduI GDGCHC 7 cut(s) 539, 770, 784, 808, 828, 2481, 3286
SfcI CTRYAG 1 cut(s) 3090
Sfr274I CTCGAG 1 cut(s) 2431
SfuI TTCGAA 1 cut(s) 901
SinI GGWCC 8 cut(s) 100, 893, 1067, 1557, 1646, 1760, 3428, 3926
SlaI CTCGAG 1 cut(s) 2431
SmiMI CAYNNNNRTG 6 cut(s) 1609, 2042, 3737, 4066, 4296, 4370
SmlI CTYRAG 5 cut(s) 2254, 2431, 2700, 3629, 3886
SmoI CTYRAG 5 cut(s) 2254, 2431, 2700, 3629, 3886
SpeI ACTAGT 2 cut(s) 2210, 4331
SspMI CTAG 8 cut(s) 821, 1020, 2051, 2211, 2262, 2472, 3636, 4332
StyI CCWWGG 4 cut(s) 96, 339, 2261, 4123
TaiI ACGT 6 cut(s) 954, 972, 2068, 2403, 3710, 3859
TaqI TCGA 7 cut(s) 390, 764, 784, 836, 901, 1656, 2432
TaqII GACCGA 1 cut(s) 1352
TatI WGTACW 3 cut(s) 1210, 1744, 2174
TauI GCSGC 2 cut(s) 367, 862
TseFI GTSAC 7 cut(s) 1333, 1483, 1689, 2857, 3187, 3512, 3907
Tsp45I GTSAC 7 cut(s) 1333, 1483, 1689, 2857, 3187, 3512, 3907
TspGWI ACGGA 4 cut(s) 246, 753, 798, 4217
Van91I CCANNNNNTGG 2 cut(s) 1891, 2846
Vha464I CTTAAG 1 cut(s) 3629
VpaK11BI GGWCC 8 cut(s) 100, 893, 1067, 1557, 1646, 1760, 3428, 3926
VspI ATTAAT 1 cut(s) 3801
XapI RAATTY 8 cut(s) 32, 50, 401, 1056, 1754, 1799, 2995, 3579
XbaI TCTAGA 1 cut(s) 820
XceI RCATGY 4 cut(s) 397, 4161, 4301, 4355
XcmI CCANNNNNNNNNTGG 2 cut(s) 1158, 2882
XhoI CTCGAG 1 cut(s) 2431
XmaJI CCTAGG 1 cut(s) 2261
XmiI GTMKAC 2 cut(s) 836, 2068
XmnI GAANNNNTTC 1 cut(s) 1143
XspI CTAG 8 cut(s) 821, 1020, 2051, 2211, 2262, 2472, 3636, 4332
Zsp2I ATGCAT 1 cut(s) 4353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.