RchiOBHm_Chr4g0389321

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000324
Physical Location & Seq
Forward (+)
4367113 .. 4369602
2490 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36245

Sequence Viewer

Length: 843 bp
ATGGAAAGGTTAGAAACTCTGGCCAAGGTTGCTACATATATGGTGATTGCTGATCTAGCTGAATTTGAGATGACCGCAAATGAGCTAGAAGCAAAGGGCCCGCTTAATCGGGAAGTGAAGATCTGGTCATCAGCGAGTGAAGAAGGCGGGCTACCTCCCAGTGATGCTGAGTCATGGAAATGTACCCGGACCATAGAGTTAAAGGGCTCTGCTCAACCTCGAGTTGAGGATGCATTCTTTAATCAAGTCATAGCATTGTCACAAGCTGGCCTTCTTTTACTTGCAAATGCTAAGAAGAATGCTATATATGCCGTGCACTTAGACCTTGGTGGTGAGCCAGCATCTACATGCATGGATTACATAGCAGAATTTACTGTTGCAATGCTTATTTTGAGCTTTACTGGGACAAGTATATCACCTCATGGTGAACAAATTTATTGTGTCCAAACACAAGCCATTCAACAGTATGCTTTGGACTTATCCAAGTGCTTACCTCCCCTATTGGAGAATTCAGGTTTAGAAAAGTTCTTTTGTTTCCAGGCATCCGATCTTGGAATTGAGATGGCTTGGGATTGCTGTGCAATATCAGTAGAATCTTATATTACAGTTGAAGCTCGGCAAGGTGATGGTGCCAGCATGTCAGAACCACTAGCCCAGCCGCTATTCTGGAGAGGAAGACCACGATCGCTCTACAAAAGATGTATCTGGGTCAGCTACCGCCACAACCGCATCACAACTACAAACACCAAATGCAAAGTCGAGAAAACAGAAATGGAAAAATATGCAAGCATCAGGTCAATCTTCCCCATCACCAGGTGTGCTCAACTCAATAGAGCCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

280

Amino Acids

31.19

Weight (kDa)

5.42

Isoelectric Point (pI)

39.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 629
AciI CCGC 6 cut(s) 75, 101, 147, 659, 718, 727
AcoI YGGCCR 1 cut(s) 21
AcsI RAATTY 4 cut(s) 62, 368, 432, 508
AdeI CACNNNGTG 1 cut(s) 816
AfaI GTAC 1 cut(s) 184
AfiI CCNNNNNNNGG 1 cut(s) 813
AgsI TTSAA 2 cut(s) 461, 611
AjnI CCWGG 2 cut(s) 537, 812
AluBI AGCT 6 cut(s) 59, 85, 266, 396, 614, 714
AluI AGCT 6 cut(s) 59, 85, 266, 396, 614, 714
Alw21I GWGCWC 2 cut(s) 318, 823
Alw44I GTGCAC 1 cut(s) 314
Ama87I CYCGRG 1 cut(s) 219
AoxI GGCC 3 cut(s) 21, 97, 268
ApaI GGGCCC 1 cut(s) 101
ApaLI GTGCAC 1 cut(s) 314
ApoI RAATTY 4 cut(s) 62, 368, 432, 508
ArsI GACNNNNNNTTYG 2 cut(s) 741, 773
AspS9I GGNCC 3 cut(s) 97, 98, 189
AsuC2I CCSGG 1 cut(s) 187
AsuHPI GGTGA 6 cut(s) 55, 344, 408, 437, 635, 802
AvaI CYCGRG 1 cut(s) 219
AvaII GGWCC 1 cut(s) 189
BaeGI GKGCMC 2 cut(s) 101, 318
BalI TGGCCA 1 cut(s) 23
BanI GGYRCC 1 cut(s) 629
BanII GRGCYC 3 cut(s) 101, 209, 838
BarI GAAGNNNNNNTAC 2 cut(s) 135, 167
BbsI GAAGAC 1 cut(s) 682
Bbv12I GWGCWC 2 cut(s) 318, 823
BccI CCATC 3 cut(s) 556, 620, 815
BceAI ACGGC 1 cut(s) 296
BciT130I CCWGG 2 cut(s) 539, 814
BcnI CCSGG 1 cut(s) 187
BfaI CTAG 3 cut(s) 56, 86, 650
BglII AGATCT 1 cut(s) 120
BisI GCNGC 1 cut(s) 659
BlsI GCNGC 1 cut(s) 660
Bme1390I CCNGG 3 cut(s) 187, 539, 814
Bme18I GGWCC 1 cut(s) 189
BmeT110I CYCGRG 1 cut(s) 219
BmgT120I GGNCC 3 cut(s) 97, 98, 189
BmiI GGNNCC 2 cut(s) 99, 631
BmrFI CCNGG 3 cut(s) 187, 539, 814
BmrI ACTGGG 2 cut(s) 153, 411
BmsI GCATC 6 cut(s) 154, 220, 350, 551, 738, 798
BmuI ACTGGG 2 cut(s) 153, 411
BpiI GAAGAC 1 cut(s) 682
BpmI CTGGAG 1 cut(s) 688
BpuMI CCSGG 1 cut(s) 187
BsaJI CCNNGG 2 cut(s) 24, 325
Bsc4I CCNNNNNNNGG 1 cut(s) 813
Bse1I ACTGG 2 cut(s) 159, 406
Bse3DI GCAATG 1 cut(s) 387
BseBI CCWGG 2 cut(s) 539, 814
BseDI CCNNGG 2 cut(s) 24, 325
BseGI GGATG 2 cut(s) 235, 542
BseLI CCNNNNNNNGG 1 cut(s) 813
BseMI GCAATG 1 cut(s) 387
BseMII CTCAG 1 cut(s) 159
BseNI ACTGG 2 cut(s) 159, 406
BseSI GKGCMC 2 cut(s) 101, 318
BseYI CCCAGC 1 cut(s) 654
Bsh1285I CGRYCG 1 cut(s) 686
BshFI GGCC 3 cut(s) 23, 99, 270
BshNI GGYRCC 1 cut(s) 629
BsiEI CGRYCG 1 cut(s) 686
BsiHKAI GWGCWC 2 cut(s) 318, 823
BsiHKCI CYCGRG 1 cut(s) 219
BsiSI CCGG 1 cut(s) 187
BslFI GGGAC 1 cut(s) 418
BslI CCNNNNNNNGG 1 cut(s) 813
BsmFI GGGAC 1 cut(s) 418
BsmI GAATGC 2 cut(s) 233, 304
BsnI GGCC 3 cut(s) 23, 99, 270
BsoBI CYCGRG 1 cut(s) 219
Bsp120I GGGCCC 1 cut(s) 97
Bsp1286I GDGCHC 5 cut(s) 101, 209, 318, 823, 838
Bsp143I GATC 4 cut(s) 52, 120, 547, 683
BspACI CCGC 6 cut(s) 75, 101, 147, 659, 718, 727
BspANI GGCC 3 cut(s) 23, 99, 270
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 2 cut(s) 99, 631
BspT107I GGYRCC 1 cut(s) 629
BsrDI GCAATG 1 cut(s) 387
BsrI ACTGG 2 cut(s) 159, 406
BssECI CCNNGG 2 cut(s) 24, 325
BssMI GATC 4 cut(s) 52, 120, 547, 683
BssT1I CCWWGG 2 cut(s) 24, 325
Bst2UI CCWGG 2 cut(s) 539, 814
Bst4CI ACNGT 3 cut(s) 376, 465, 607
BstC8I GCNNGC 6 cut(s) 101, 149, 268, 339, 634, 787
BstDEI CTNAG 3 cut(s) 168, 291, 319
BstF5I GGATG 2 cut(s) 235, 542
BstKTI GATC 4 cut(s) 55, 123, 550, 686
BstMBI GATC 4 cut(s) 52, 120, 547, 683
BstMCI CGRYCG 1 cut(s) 686
BstMWI GCNNNNNNNGC 4 cut(s) 29, 56, 308, 726
BstNI CCWGG 2 cut(s) 539, 814
BstNSI RCATGY 2 cut(s) 351, 640
BstSCI CCNGG 3 cut(s) 185, 537, 812
BstSLI GKGCMC 2 cut(s) 101, 318
BstV2I GAAGAC 1 cut(s) 682
BstX2I RGATCY 1 cut(s) 120
BstYI RGATCY 1 cut(s) 120
BsuRI GGCC 3 cut(s) 23, 99, 270
BtsCI GGATG 2 cut(s) 235, 542
BtsIMutI CAGTG 1 cut(s) 166
Cac8I GCNNGC 6 cut(s) 101, 149, 268, 339, 634, 787
Cfr13I GGNCC 3 cut(s) 97, 98, 189
CsiI ACCWGGT 1 cut(s) 812
Csp6I GTAC 1 cut(s) 183
CviAII CATG 5 cut(s) 174, 348, 352, 422, 637
CviQI GTAC 1 cut(s) 183
DdeI CTNAG 3 cut(s) 168, 291, 319
DpnI GATC 4 cut(s) 54, 122, 549, 685
DpnII GATC 4 cut(s) 52, 120, 547, 683
DraIII CACNNNGTG 1 cut(s) 816
EaeI YGGCCR 1 cut(s) 21
Eco130I CCWWGG 2 cut(s) 24, 325
Eco24I GRGCYC 3 cut(s) 101, 209, 838
Eco47I GGWCC 1 cut(s) 189
Eco88I CYCGRG 1 cut(s) 219
EcoO109I RGGNCCY 1 cut(s) 97
EcoRI GAATTC 1 cut(s) 508
EcoRII CCWGG 2 cut(s) 537, 812
EcoT14I CCWWGG 2 cut(s) 24, 325
EcoT22I ATGCAT 2 cut(s) 235, 353
EcoT38I GRGCYC 3 cut(s) 101, 209, 838
ErhI CCWWGG 2 cut(s) 24, 325
FaeI CATG 5 cut(s) 177, 351, 355, 425, 640
FalI AAGNNNNNCTT 2 cut(s) 255, 287
FaqI GGGAC 1 cut(s) 418
FatI CATG 5 cut(s) 173, 347, 351, 421, 636
FauI CCCGC 2 cut(s) 108, 140
Fnu4HI GCNGC 1 cut(s) 659
FokI GGATG 2 cut(s) 242, 529
FriOI GRGCYC 3 cut(s) 101, 209, 838
Fsp4HI GCNGC 1 cut(s) 659
FspBI CTAG 3 cut(s) 56, 86, 650
GluI GCNGC 1 cut(s) 659
GsaI CCCAGC 1 cut(s) 658
GsuI CTGGAG 1 cut(s) 688
HaeIII GGCC 3 cut(s) 23, 99, 270
HapII CCGG 1 cut(s) 187
Hin1II CATG 5 cut(s) 177, 351, 355, 425, 640
HinfI GANTC 2 cut(s) 170, 593
HpaII CCGG 1 cut(s) 187
HphI GGTGA 6 cut(s) 55, 344, 408, 437, 635, 802
Hpy166II GTNNAC 2 cut(s) 316, 428
Hpy188I TCNGA 2 cut(s) 547, 643
Hpy188III TCNNGA 3 cut(s) 110, 667, 760
Hpy8I GTNNAC 2 cut(s) 316, 428
HpyAV CCTTC 2 cut(s) 137, 281
HpyCH4III ACNGT 3 cut(s) 376, 465, 607
HpyCH4V TGCA 8 cut(s) 233, 284, 316, 351, 380, 581, 753, 785
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 56, 308, 726
HpyF3I CTNAG 3 cut(s) 168, 291, 319
Hsp92II CATG 5 cut(s) 177, 351, 355, 425, 640
Kzo9I GATC 4 cut(s) 52, 120, 547, 683
LweI GCATC 6 cut(s) 154, 220, 350, 551, 738, 798
MabI ACCWGGT 1 cut(s) 812
MaeI CTAG 3 cut(s) 56, 86, 650
MaeIII GTNAC 1 cut(s) 258
MalI GATC 4 cut(s) 54, 122, 549, 685
MboI GATC 4 cut(s) 52, 120, 547, 683
MboII GAAGA 5 cut(s) 130, 152, 307, 687, 793
MflI RGATCY 1 cut(s) 120
MhlI GDGCHC 5 cut(s) 101, 209, 318, 823, 838
MlsI TGGCCA 1 cut(s) 23
MluCI AATT 5 cut(s) 62, 368, 432, 508, 555
MluNI TGGCCA 1 cut(s) 23
MlyI GAGTC 1 cut(s) 179
MnlI CCTC 6 cut(s) 165, 220, 228, 429, 504, 665
Mox20I TGGCCA 1 cut(s) 23
Mph1103I ATGCAT 2 cut(s) 235, 353
MscI TGGCCA 1 cut(s) 23
MseI TTAA 3 cut(s) 105, 200, 240
MslI CAYNNNNRTG 2 cut(s) 178, 346
Msp20I TGGCCA 1 cut(s) 23
MspI CCGG 1 cut(s) 187
MspR9I CCNGG 3 cut(s) 187, 539, 814
Mva1269I GAATGC 2 cut(s) 233, 304
MvaI CCWGG 2 cut(s) 539, 814
MwoI GCNNNNNNNGC 4 cut(s) 29, 56, 308, 726
NciI CCSGG 1 cut(s) 187
NdeII GATC 4 cut(s) 52, 120, 547, 683
NlaIII CATG 5 cut(s) 177, 351, 355, 425, 640
NlaIV GGNNCC 2 cut(s) 99, 631
NmeAIII GCCGAG 1 cut(s) 595
NmuCI GTSAC 1 cut(s) 258
NsiI ATGCAT 2 cut(s) 235, 353
NspI RCATGY 2 cut(s) 351, 640
PaeR7I CTCGAG 1 cut(s) 219
PctI GAATGC 2 cut(s) 233, 304
PfeI GAWTC 1 cut(s) 593
PkrI GCNGC 1 cut(s) 660
Ple19I CGATCG 1 cut(s) 686
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
Psp6I CCWGG 2 cut(s) 537, 812
PspFI CCCAGC 1 cut(s) 654
PspGI CCWGG 2 cut(s) 537, 812
PspN4I GGNNCC 2 cut(s) 99, 631
PspOMI GGGCCC 1 cut(s) 97
PspPI GGNCC 3 cut(s) 97, 98, 189
PspXI VCTCGAGB 1 cut(s) 219
PsuI RGATCY 1 cut(s) 120
PvuI CGATCG 1 cut(s) 686
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
RseI CAYNNNNRTG 2 cut(s) 178, 346
SaqAI TTAA 3 cut(s) 105, 200, 240
SatI GCNGC 1 cut(s) 659
Sau3AI GATC 4 cut(s) 52, 120, 547, 683
Sau96I GGNCC 3 cut(s) 97, 98, 189
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 3 cut(s) 187, 539, 814
SduI GDGCHC 5 cut(s) 101, 209, 318, 823, 838
SexAI ACCWGGT 1 cut(s) 812
SfaNI GCATC 6 cut(s) 154, 220, 350, 551, 738, 798
Sfr274I CTCGAG 1 cut(s) 219
SinI GGWCC 1 cut(s) 189
SlaI CTCGAG 1 cut(s) 219
SmiMI CAYNNNNRTG 2 cut(s) 178, 346
SmlI CTYRAG 1 cut(s) 219
SmoI CTYRAG 1 cut(s) 219
Sse9I AATT 5 cut(s) 62, 368, 432, 508, 555
SsiI CCGC 6 cut(s) 75, 101, 147, 659, 718, 727
SspMI CTAG 3 cut(s) 56, 86, 650
StyD4I CCNGG 3 cut(s) 185, 537, 812
StyI CCWWGG 2 cut(s) 24, 325
TaaI ACNGT 3 cut(s) 376, 465, 607
TaqI TCGA 2 cut(s) 220, 759
TasI AATT 5 cut(s) 62, 368, 432, 508, 555
TauI GCSGC 1 cut(s) 661
TfiI GAWTC 1 cut(s) 593
Tru1I TTAA 3 cut(s) 105, 200, 240
Tru9I TTAA 3 cut(s) 105, 200, 240
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 1 cut(s) 258
Tsp45I GTSAC 1 cut(s) 258
TspRI CASTG 1 cut(s) 166
VneI GTGCAC 1 cut(s) 314
VpaK11BI GGWCC 1 cut(s) 189
XapI RAATTY 4 cut(s) 62, 368, 432, 508
XceI RCATGY 2 cut(s) 351, 640
XhoI CTCGAG 1 cut(s) 219
XspI CTAG 3 cut(s) 56, 86, 650
Zsp2I ATGCAT 2 cut(s) 235, 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.