RchiOBHm_Chr4g0386811

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000324
Physical Location & Seq
Reverse (-)
2175085 .. 2175977
893 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36016

Sequence Viewer

Length: 276 bp
ATGAAGCAGGTGGCACTGTGGCAGTTCAAGTCCCCACTCAGGAGAAGCTGTATTTCCTCAAATTATAGCCAGGCAGGATATGATGAATCAGCTAATGACTATGCAAAAAGATTTGCAAAAGCAGAGACAATTATGGTTACCGTCCCTATTACAAAGGAAGGCAAACGAATAGAGGCGGCTCTCAGTTGGAGTATGGAGAAGGCTGTAAAGGCCAATAACGTTGCTCTGTGGGCTCAGTTTCAAGAAGAGAATGCAAAGAATGAGAAATTATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

91

Amino Acids

10.36

Weight (kDa)

9.34

Isoelectric Point (pI)

60.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 176
AclI AACGTT 1 cut(s) 219
AfiI CCNNNNNNNGG 1 cut(s) 39
AgsI TTSAA 2 cut(s) 28, 242
AjnI CCWGG 1 cut(s) 69
AluBI AGCT 2 cut(s) 48, 92
AluI AGCT 2 cut(s) 48, 92
Alw26I GTCTC 1 cut(s) 119
AoxI GGCC 1 cut(s) 210
BanII GRGCYC 1 cut(s) 235
BciT130I CCWGG 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 119
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 71
BmrFI CCNGG 1 cut(s) 71
BsaXI ACNNNNNCTCC 2 cut(s) 34, 64
Bsc4I CCNNNNNNNGG 1 cut(s) 39
BseBI CCWGG 1 cut(s) 71
BseLI CCNNNNNNNGG 1 cut(s) 39
BseMII CTCAG 3 cut(s) 52, 196, 248
BshFI GGCC 1 cut(s) 212
BslFI GGGAC 2 cut(s) 16, 128
BslI CCNNNNNNNGG 1 cut(s) 39
BsmAI GTCTC 1 cut(s) 119
BsmFI GGGAC 2 cut(s) 16, 128
BsmI GAATGC 1 cut(s) 256
BsnI GGCC 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 235
BspACI CCGC 1 cut(s) 176
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 3 cut(s) 51, 195, 247
Bst2UI CCWGG 1 cut(s) 71
Bst4CI ACNGT 2 cut(s) 18, 142
Bst6I CTCTTC 1 cut(s) 240
BstDEI CTNAG 3 cut(s) 38, 182, 234
BstEII GGTNACC 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 119
BstMWI GCNNNNNNNGC 2 cut(s) 209, 230
BstNI CCWGG 1 cut(s) 71
BstPI GGTNACC 1 cut(s) 136
BstSCI CCNGG 1 cut(s) 69
BsuRI GGCC 1 cut(s) 212
BtsIMutI CAGTG 1 cut(s) 14
CviJI RGCY 7 cut(s) 48, 69, 92, 179, 203, 212, 233
CviKI_1 RGCY 7 cut(s) 48, 69, 92, 179, 203, 212, 233
DdeI CTNAG 3 cut(s) 38, 182, 234
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Eco24I GRGCYC 1 cut(s) 235
Eco91I GGTNACC 1 cut(s) 136
EcoO65I GGTNACC 1 cut(s) 136
EcoRII CCWGG 1 cut(s) 69
EcoT38I GRGCYC 1 cut(s) 235
FaiI YATR 5 cut(s) 66, 81, 102, 134, 194
FaqI GGGAC 2 cut(s) 16, 128
Fnu4HI GCNGC 1 cut(s) 177
FriOI GRGCYC 1 cut(s) 235
Fsp4HI GCNGC 1 cut(s) 177
GluI GCNGC 1 cut(s) 177
HaeIII GGCC 1 cut(s) 212
HinfI GANTC 1 cut(s) 86
Hpy188III TCNNGA 2 cut(s) 40, 242
HpyAV CCTTC 2 cut(s) 152, 193
HpyCH4III ACNGT 2 cut(s) 18, 142
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 3 cut(s) 104, 116, 254
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 230
HpyF3I CTNAG 3 cut(s) 38, 182, 234
HpySE526I ACGT 1 cut(s) 219
LpnPI CCDG 4 cut(s) 25, 56, 60, 83
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 136
MboII GAAGA 1 cut(s) 257
MhlI GDGCHC 1 cut(s) 235
MluCI AATT 3 cut(s) 61, 129, 266
MmeI TCCRAC 1 cut(s) 167
MnlI CCTC 2 cut(s) 67, 166
MspR9I CCNGG 1 cut(s) 71
Mva1269I GAATGC 1 cut(s) 256
MvaI CCWGG 1 cut(s) 71
MwoI GCNNNNNNNGC 2 cut(s) 209, 230
PctI GAATGC 1 cut(s) 256
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 1 cut(s) 178
Psp1406I AACGTT 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 69
PspEI GGTNACC 1 cut(s) 136
PspGI CCWGG 1 cut(s) 69
SatI GCNGC 1 cut(s) 177
ScrFI CCNGG 1 cut(s) 71
SduI GDGCHC 1 cut(s) 235
SetI ASST 4 cut(s) 12, 50, 94, 222
SgeI CNNG 7 cut(s) 20, 40, 52, 82, 83, 87, 254
Sse9I AATT 3 cut(s) 61, 129, 266
SsiI CCGC 1 cut(s) 176
StyD4I CCNGG 1 cut(s) 69
TaaI ACNGT 2 cut(s) 18, 142
TaiI ACGT 1 cut(s) 222
TasI AATT 3 cut(s) 61, 129, 266
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 1 cut(s) 86
TscAI CASTG 1 cut(s) 21
TspDTI ATGAA 2 cut(s) 17, 99
TspRI CASTG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.