Rmu_sc0002498.1_g000018

Enhancer of mRNA-decapping protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002498.1
Physical Location & Seq
Reverse (-)
110622 .. 114606
3985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002498.1_g000018.1.cds

Sequence Viewer

Length: 840 bp
atggaattactgcctcagtaccatggaggagcgaattttggccgaagtcctgctggtccctccattgcaactaattatgactatgatgcacctctagatgaatatgtggggactatacattttgcacttggagaggttacaaactctggccaagttggctacatggtaattgctgatctagctcaatttgagatgaccgcaaataaactagaagcaaaggtgtgtgctgaccttcttgaggaaatggaattggttttcattgtttctaaggatggaattgatactgtgagagtggtatgccgattcaaatgcctgagcaataagctaccgaaaggcaggcatttgattggggatagtgtggtttacgatgtggatgtttggttgcccggggagtttcagctgcagctagaagttacccccataaccaagtatgattcggaccctcagctggtgttgggccgccaaattgcggtgaataagtcatatgtatgcatgctatggattgaagcaggggaatattcgggttttgaatattcgggtgtgagtgtagaaggatggctttttgtctggaaaatttctgaaggtccagacgaagacggtacgccacaaatcacaggaaagattgttatagccattcaacgtgttctacaaattgatactactaaagttgcaaagggtaaagtcccttctgctgaggatcctattaagtttcttgttgaaaagcttattgatggggtccaatttgttggtaaacatgacagagaggtgacagattttatcaatgtgccaatggatgaccacctggctggtttctgcttctttggatggaactgtagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

279

Amino Acids

31.01

Weight (kDa)

4.67

Isoelectric Point (pI)

27.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 198, 460, 470
AclWI GGATC 2 cut(s) 692, 705
AcoI YGGCCR 2 cut(s) 40, 148
AcsI RAATTY 2 cut(s) 34, 573
AcuI CTGAAG 1 cut(s) 600
AfaI GTAC 2 cut(s) 20, 601
AfiI CCNNNNNNNGG 3 cut(s) 238, 448, 469
AflIII ACRYGT 1 cut(s) 640
AgsI TTSAA 5 cut(s) 307, 506, 530, 638, 719
AjnI CCWGG 1 cut(s) 801
AluBI AGCT 6 cut(s) 182, 325, 400, 406, 448, 724
AluI AGCT 6 cut(s) 182, 325, 400, 406, 448, 724
AlwI GGATC 2 cut(s) 692, 705
Ama87I CYCGRG 1 cut(s) 386
AoxI GGCC 3 cut(s) 40, 148, 457
ApeKI GCWGC 2 cut(s) 400, 403
ApoI RAATTY 2 cut(s) 34, 573
AspS9I GGNCC 5 cut(s) 56, 439, 457, 584, 736
AsuC2I CCSGG 2 cut(s) 387, 388
AsuHPI GGTGA 2 cut(s) 484, 778
AvaI CYCGRG 1 cut(s) 386
AvaII GGWCC 4 cut(s) 56, 439, 584, 736
BalI TGGCCA 1 cut(s) 150
BamHI GGATCC 1 cut(s) 697
BarI GAAGNNNNNNTAC 2 cut(s) 670, 702
BbsI GAAGAC 1 cut(s) 600
BbvCI CCTCAGC 2 cut(s) 444, 693
BbvI GCAGC 2 cut(s) 387, 415
BccI CCATC 4 cut(s) 266, 549, 725, 819
BcgI CGANNNNNNTGC 2 cut(s) 291, 325
BciT130I CCWGG 1 cut(s) 803
BcnI CCSGG 2 cut(s) 387, 388
BfaI CTAG 4 cut(s) 95, 179, 209, 407
BfmI CTRYAG 2 cut(s) 401, 832
BglI GCCNNNNNGGC 1 cut(s) 156
BisI GCNGC 3 cut(s) 401, 404, 460
BlsI GCNGC 3 cut(s) 402, 405, 461
Bme1390I CCNGG 3 cut(s) 387, 388, 803
Bme18I GGWCC 4 cut(s) 56, 439, 584, 736
BmeT110I CYCGRG 1 cut(s) 386
BmgT120I GGNCC 5 cut(s) 56, 439, 457, 584, 736
BmiI GGNNCC 4 cut(s) 58, 441, 699, 737
BmrFI CCNGG 3 cut(s) 387, 388, 803
BmsI GCATC 1 cut(s) 76
BpiI GAAGAC 1 cut(s) 600
Bpu10I CCTNAGC 3 cut(s) 314, 444, 693
BpuEI CTTGAG 1 cut(s) 257
BpuMI CCSGG 2 cut(s) 387, 388
BsaJI CCNNGG 3 cut(s) 22, 386, 387
Bsc4I CCNNNNNNNGG 3 cut(s) 238, 448, 469
Bse3DI GCAATG 1 cut(s) 63
BseBI CCWGG 1 cut(s) 803
BseDI CCNNGG 3 cut(s) 22, 386, 387
BseGI GGATG 5 cut(s) 277, 379, 560, 799, 830
BseLI CCNNNNNNNGG 3 cut(s) 238, 448, 469
BseMI GCAATG 1 cut(s) 63
BseMII CTCAG 4 cut(s) 29, 305, 458, 684
BseRI GAGGAG 1 cut(s) 42
BseXI GCAGC 2 cut(s) 387, 415
BshFI GGCC 3 cut(s) 42, 150, 459
BsiHKCI CYCGRG 1 cut(s) 386
BsiSI CCGG 1 cut(s) 387
BslFI GGGAC 3 cut(s) 42, 124, 668
BslI CCNNNNNNNGG 3 cut(s) 238, 448, 469
BsmFI GGGAC 3 cut(s) 42, 124, 668
BsnI GGCC 3 cut(s) 42, 150, 459
BsoBI CYCGRG 1 cut(s) 386
Bsp143I GATC 2 cut(s) 175, 697
Bsp19I CCATGG 1 cut(s) 22
BspACI CCGC 3 cut(s) 198, 460, 470
BspANI GGCC 3 cut(s) 42, 150, 459
BspCNI CTCAG 4 cut(s) 28, 306, 457, 685
BspLI GGNNCC 4 cut(s) 58, 441, 699, 737
BspMAI CTGCAG 1 cut(s) 405
BspPI GGATC 2 cut(s) 692, 705
BsrDI GCAATG 1 cut(s) 63
BssECI CCNNGG 3 cut(s) 22, 386, 387
BssMI GATC 2 cut(s) 175, 697
BssT1I CCWWGG 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 803
Bst4CI ACNGT 3 cut(s) 286, 599, 833
BstC8I GCNNGC 2 cut(s) 338, 494
BstDEI CTNAG 5 cut(s) 15, 267, 314, 444, 693
BstDSI CCRYGG 1 cut(s) 22
BstENI CCTNNNNNAGG 1 cut(s) 236
BstF5I GGATG 5 cut(s) 277, 379, 560, 799, 830
BstKTI GATC 2 cut(s) 178, 700
BstMBI GATC 2 cut(s) 175, 697
BstMWI GCNNNNNNNGC 2 cut(s) 156, 179
BstNI CCWGG 1 cut(s) 803
BstNSI RCATGY 1 cut(s) 496
BstSCI CCNGG 3 cut(s) 385, 386, 801
BstSFI CTRYAG 2 cut(s) 401, 832
BstV1I GCAGC 2 cut(s) 387, 415
BstV2I GAAGAC 1 cut(s) 600
BstX2I RGATCY 1 cut(s) 697
BstXI CCANNNNNNTGG 2 cut(s) 746, 806
BstYI RGATCY 1 cut(s) 697
BsuRI GGCC 3 cut(s) 42, 150, 459
BtgI CCRYGG 1 cut(s) 22
BtsCI GGATG 5 cut(s) 277, 379, 560, 799, 830
Cac8I GCNNGC 2 cut(s) 338, 494
Cfr13I GGNCC 5 cut(s) 56, 439, 457, 584, 736
Cfr9I CCCGGG 1 cut(s) 386
Csp6I GTAC 2 cut(s) 19, 600
CviAII CATG 4 cut(s) 23, 163, 493, 755
CviQI GTAC 2 cut(s) 19, 600
DdeI CTNAG 5 cut(s) 15, 267, 314, 444, 693
DpnI GATC 2 cut(s) 177, 699
DpnII GATC 2 cut(s) 175, 697
EaeI YGGCCR 2 cut(s) 40, 148
Eco130I CCWWGG 1 cut(s) 22
Eco47I GGWCC 4 cut(s) 56, 439, 584, 736
Eco57I CTGAAG 1 cut(s) 600
Eco88I CYCGRG 1 cut(s) 386
EcoNI CCTNNNNNAGG 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 801
EcoT14I CCWWGG 1 cut(s) 22
EcoT22I ATGCAT 1 cut(s) 494
ErhI CCWWGG 1 cut(s) 22
FaeI CATG 4 cut(s) 26, 166, 496, 758
FalI AAGNNNNNCTT 2 cut(s) 543, 575
FaqI GGGAC 3 cut(s) 42, 124, 668
FatI CATG 4 cut(s) 22, 162, 492, 754
FauNDI CATATG 1 cut(s) 484
Fnu4HI GCNGC 3 cut(s) 401, 404, 460
FokI GGATG 4 cut(s) 284, 386, 567, 806
Fsp4HI GCNGC 3 cut(s) 401, 404, 460
FspBI CTAG 4 cut(s) 95, 179, 209, 407
GluI GCNGC 3 cut(s) 401, 404, 460
HaeIII GGCC 3 cut(s) 42, 150, 459
HapII CCGG 1 cut(s) 387
Hin1II CATG 4 cut(s) 26, 166, 496, 758
HindIII AAGCTT 1 cut(s) 722
HinfI GANTC 2 cut(s) 303, 434
HpaII CCGG 1 cut(s) 387
HphI GGTGA 2 cut(s) 484, 778
Hpy166II GTNNAC 2 cut(s) 364, 752
Hpy188I TCNGA 2 cut(s) 439, 580
Hpy188III TCNNGA 4 cut(s) 95, 236, 568, 587
Hpy8I GTNNAC 2 cut(s) 364, 752
HpyAV CCTTC 4 cut(s) 242, 545, 575, 696
HpyCH4III ACNGT 3 cut(s) 286, 599, 833
HpyCH4IV ACGT 1 cut(s) 640
HpyCH4V TGCA 6 cut(s) 68, 89, 125, 403, 492, 671
HpyF10VI GCNNNNNNNGC 2 cut(s) 156, 179
HpyF3I CTNAG 5 cut(s) 15, 267, 314, 444, 693
HpySE526I ACGT 1 cut(s) 640
Hsp92II CATG 4 cut(s) 26, 166, 496, 758
Kzo9I GATC 2 cut(s) 175, 697
LmnI GCTCC 1 cut(s) 29
Lsp1109I GCAGC 2 cut(s) 387, 415
LweI GCATC 1 cut(s) 76
MaeI CTAG 4 cut(s) 95, 179, 209, 407
MaeII ACGT 1 cut(s) 640
MaeIII GTNAC 3 cut(s) 136, 412, 766
MalI GATC 2 cut(s) 177, 699
MboI GATC 2 cut(s) 175, 697
MboII GAAGA 1 cut(s) 605
MflI RGATCY 1 cut(s) 697
MlsI TGGCCA 1 cut(s) 150
MluNI TGGCCA 1 cut(s) 150
MnlI CCTC 9 cut(s) 20, 24, 70, 102, 127, 232, 453, 688, 757
Mox20I TGGCCA 1 cut(s) 150
Mph1103I ATGCAT 1 cut(s) 494
MscI TGGCCA 1 cut(s) 150
MseI TTAA 1 cut(s) 705
MslI CAYNNNNRTG 1 cut(s) 487
Msp20I TGGCCA 1 cut(s) 150
MspA1I CMGCKG 2 cut(s) 400, 448
MspI CCGG 1 cut(s) 387
MspR9I CCNGG 3 cut(s) 387, 388, 803
MvaI CCWGG 1 cut(s) 803
MwoI GCNNNNNNNGC 2 cut(s) 156, 179
NciI CCSGG 2 cut(s) 387, 388
NcoI CCATGG 1 cut(s) 22
NdeI CATATG 1 cut(s) 484
NdeII GATC 2 cut(s) 175, 697
NlaIII CATG 4 cut(s) 26, 166, 496, 758
NlaIV GGNNCC 4 cut(s) 58, 441, 699, 737
NmuCI GTSAC 1 cut(s) 766
NsiI ATGCAT 1 cut(s) 494
NspI RCATGY 1 cut(s) 496
PaeI GCATGC 1 cut(s) 496
PfeI GAWTC 2 cut(s) 303, 434
PkrI GCNGC 3 cut(s) 402, 405, 461
Psp6I CCWGG 1 cut(s) 801
PspGI CCWGG 1 cut(s) 801
PspN4I GGNNCC 4 cut(s) 58, 441, 699, 737
PspPI GGNCC 5 cut(s) 56, 439, 457, 584, 736
PstI CTGCAG 1 cut(s) 405
PsuI RGATCY 1 cut(s) 697
PvuII CAGCTG 2 cut(s) 400, 448
RsaI GTAC 2 cut(s) 20, 601
RsaNI GTAC 2 cut(s) 19, 600
RseI CAYNNNNRTG 1 cut(s) 487
SaqAI TTAA 1 cut(s) 705
SatI GCNGC 3 cut(s) 401, 404, 460
Sau3AI GATC 2 cut(s) 175, 697
Sau96I GGNCC 5 cut(s) 56, 439, 457, 584, 736
ScrFI CCNGG 3 cut(s) 387, 388, 803
SfaNI GCATC 1 cut(s) 76
SfcI CTRYAG 2 cut(s) 401, 832
SinI GGWCC 4 cut(s) 56, 439, 584, 736
SmaI CCCGGG 1 cut(s) 388
SmiMI CAYNNNNRTG 1 cut(s) 487
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
SphI GCATGC 1 cut(s) 496
SsiI CCGC 3 cut(s) 198, 460, 470
SspI AATATT 2 cut(s) 518, 533
SspMI CTAG 4 cut(s) 95, 179, 209, 407
StyD4I CCNGG 3 cut(s) 385, 386, 801
StyI CCWWGG 1 cut(s) 22
TaaI ACNGT 3 cut(s) 286, 599, 833
TaiI ACGT 1 cut(s) 643
TauI GCSGC 1 cut(s) 462
TfiI GAWTC 2 cut(s) 303, 434
Tru1I TTAA 1 cut(s) 705
Tru9I TTAA 1 cut(s) 705
TseFI GTSAC 1 cut(s) 766
TseI GCWGC 2 cut(s) 400, 403
Tsp45I GTSAC 1 cut(s) 766
TspDTI ATGAA 2 cut(s) 114, 247
TspMI CCCGGG 1 cut(s) 386
VpaK11BI GGWCC 4 cut(s) 56, 439, 584, 736
XagI CCTNNNNNAGG 1 cut(s) 236
XapI RAATTY 2 cut(s) 34, 573
XbaI TCTAGA 1 cut(s) 94
XceI RCATGY 1 cut(s) 496
XmaI CCCGGG 1 cut(s) 386
XspI CTAG 4 cut(s) 95, 179, 209, 407
Zsp2I ATGCAT 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.