Rh4BG020000

Enhancer of mRNA-decapping protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
3109870 .. 3113197
3328 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG020000.1

Sequence Viewer

Length: 414 bp
ATGGAAGCTTCAGTGGTACCTGCCTTTGAGACGTCATGTAAATCCATGTTTGAGCAAGTAGATGCCACATTCCAGAAAGCAATGGTTGAACATGCAACTGTGGCTCAGCAGCAATTTGAGTCTGCACATTCGCCGTTGGCCCACGCTGAAGCTATTAGCTTCGCATCATCAGAGACTCAAATCCTAAGCGGTGAACTGGCTAATGGCAACGTAACAAGCGAACCAATAGTGATATACACCAACAGTGGTGAGACCATTTGTTGGTCAGAGCAAGCAATGGGTGCCATTGAGTGGGGGGTTGATGAAGAGTTTGCAGACAGTGACGTGAGGCTGGGGCTTCCCTGTATGGAGGCTGCTGCAGAACACTTCCAAATACCATCACGGCAATATCTAAGGCTCTTTCTAACGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

137

Amino Acids

14.97

Weight (kDa)

4.29

Isoelectric Point (pI)

35.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 35
Acc36I ACCTGC 1 cut(s) 28
Acc65I GGTACC 1 cut(s) 16
AccB1I GGYRCC 2 cut(s) 16, 281
AccB7I CCANNNNNTGG 2 cut(s) 261, 291
AciI CCGC 1 cut(s) 189
AcuI CTGAAG 1 cut(s) 168
AcyI GRCGYC 1 cut(s) 32
AfaI GTAC 1 cut(s) 18
AfiI CCNNNNNNNGG 2 cut(s) 261, 291
AgsI TTSAA 1 cut(s) 89
AjiI CACGTC 1 cut(s) 325
AluBI AGCT 4 cut(s) 8, 152, 159, 411
AluI AGCT 4 cut(s) 8, 152, 159, 411
Alw26I GTCTC 3 cut(s) 23, 167, 245
AoxI GGCC 1 cut(s) 138
ApeKI GCWGC 3 cut(s) 109, 353, 356
Asp718I GGTACC 1 cut(s) 16
AspS9I GGNCC 1 cut(s) 139
AsuHPI GGTGA 2 cut(s) 203, 260
BanI GGYRCC 2 cut(s) 16, 281
BbvI GCAGC 3 cut(s) 121, 340, 343
BccI CCATC 1 cut(s) 385
BceAI ACGGC 2 cut(s) 118, 398
BcoDI GTCTC 3 cut(s) 23, 167, 245
BfaI CTAG 1 cut(s) 412
BfmI CTRYAG 1 cut(s) 357
BfuAI ACCTGC 1 cut(s) 28
BisI GCNGC 3 cut(s) 110, 354, 357
BlpI GCTNAGC 1 cut(s) 105
BlsI GCNGC 3 cut(s) 111, 355, 358
BmgBI CACGTC 1 cut(s) 325
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 2 cut(s) 18, 283
BmsI GCATC 2 cut(s) 52, 173
Bpu10I CCTNAGC 1 cut(s) 185
Bpu1102I GCTNAGC 1 cut(s) 105
BsaHI GRCGYC 1 cut(s) 32
BsaI GGTCTC 1 cut(s) 245
Bsc4I CCNNNNNNNGG 2 cut(s) 261, 291
Bse1I ACTGG 1 cut(s) 201
Bse3DI GCAATG 2 cut(s) 87, 282
BseLI CCNNNNNNNGG 2 cut(s) 261, 291
BseMI GCAATG 2 cut(s) 87, 282
BseMII CTCAG 1 cut(s) 119
BseNI ACTGG 1 cut(s) 201
BseXI GCAGC 3 cut(s) 121, 340, 343
BseYI CCCAGC 1 cut(s) 331
BsgI GTGCAG 1 cut(s) 108
BshFI GGCC 1 cut(s) 140
BshNI GGYRCC 2 cut(s) 16, 281
BslI CCNNNNNNNGG 2 cut(s) 261, 291
BsmAI GTCTC 3 cut(s) 23, 167, 245
BsmBI CGTCTC 1 cut(s) 23
BsnI GGCC 1 cut(s) 140
Bso31I GGTCTC 1 cut(s) 245
Bsp1720I GCTNAGC 1 cut(s) 105
BspACI CCGC 1 cut(s) 189
BspANI GGCC 1 cut(s) 140
BspCNI CTCAG 1 cut(s) 118
BspLI GGNNCC 2 cut(s) 18, 283
BspMAI CTGCAG 1 cut(s) 361
BspMI ACCTGC 1 cut(s) 28
BspT107I GGYRCC 2 cut(s) 16, 281
BspTNI GGTCTC 1 cut(s) 245
BsrDI GCAATG 2 cut(s) 87, 282
BsrI ACTGG 1 cut(s) 201
BssNI GRCGYC 1 cut(s) 32
Bst4CI ACNGT 3 cut(s) 100, 245, 320
Bst6I CTCTTC 1 cut(s) 300
BstACI GRCGYC 1 cut(s) 32
BstAPI GCANNNNNTGC 1 cut(s) 281
BstC8I GCNNGC 1 cut(s) 273
BstDEI CTNAG 3 cut(s) 105, 185, 392
BstMAI GTCTC 3 cut(s) 23, 167, 245
BstMWI GCNNNNNNNGC 2 cut(s) 101, 281
BstNSI RCATGY 1 cut(s) 95
BstSFI CTRYAG 1 cut(s) 357
BstV1I GCAGC 3 cut(s) 121, 340, 343
BsuRI GGCC 1 cut(s) 140
BtrI CACGTC 1 cut(s) 325
BtsIMutI CAGTG 3 cut(s) 18, 250, 325
BveI ACCTGC 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 273
Cfr13I GGNCC 1 cut(s) 139
Csp6I GTAC 1 cut(s) 17
CviAII CATG 3 cut(s) 36, 46, 92
CviQI GTAC 1 cut(s) 17
DdeI CTNAG 3 cut(s) 105, 185, 392
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Eco31I GGTCTC 1 cut(s) 245
Eco57I CTGAAG 1 cut(s) 168
Esp3I CGTCTC 1 cut(s) 23
FaeI CATG 3 cut(s) 39, 49, 95
FaiI YATR 5 cut(s) 37, 47, 93, 235, 347
FatI CATG 3 cut(s) 35, 45, 91
Fnu4HI GCNGC 3 cut(s) 110, 354, 357
Fsp4HI GCNGC 3 cut(s) 110, 354, 357
FspBI CTAG 1 cut(s) 412
GluI GCNGC 3 cut(s) 110, 354, 357
GsaI CCCAGC 1 cut(s) 335
HaeIII GGCC 1 cut(s) 140
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 3 cut(s) 39, 49, 95
HindIII AAGCTT 1 cut(s) 6
HinfI GANTC 2 cut(s) 119, 175
HphI GGTGA 2 cut(s) 203, 260
Hpy166II GTNNAC 1 cut(s) 194
Hpy188I TCNGA 2 cut(s) 172, 268
Hpy188III TCNNGA 1 cut(s) 73
Hpy8I GTNNAC 1 cut(s) 194
HpyCH4III ACNGT 3 cut(s) 100, 245, 320
HpyCH4IV ACGT 3 cut(s) 32, 210, 324
HpyCH4V TGCA 4 cut(s) 95, 125, 314, 359
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 281
HpyF3I CTNAG 3 cut(s) 105, 185, 392
HpySE526I ACGT 3 cut(s) 32, 210, 324
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 3 cut(s) 39, 49, 95
KpnI GGTACC 1 cut(s) 20
LpnPI CCDG 5 cut(s) 33, 86, 182, 317, 355
Lsp1109I GCAGC 3 cut(s) 121, 340, 343
LweI GCATC 2 cut(s) 52, 173
MaeI CTAG 1 cut(s) 412
MaeII ACGT 3 cut(s) 32, 210, 324
MaeIII GTNAC 2 cut(s) 211, 320
MboII GAAGA 1 cut(s) 317
MluCI AATT 1 cut(s) 113
MlyI GAGTC 2 cut(s) 128, 169
MnlI CCTC 2 cut(s) 321, 343
MwoI GCNNNNNNNGC 2 cut(s) 101, 281
NlaIII CATG 3 cut(s) 39, 49, 95
NlaIV GGNNCC 2 cut(s) 18, 283
NmuCI GTSAC 1 cut(s) 320
NspI RCATGY 1 cut(s) 95
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PflMI CCANNNNNTGG 2 cut(s) 261, 291
PkrI GCNGC 3 cut(s) 111, 355, 358
PleI GAGTC 2 cut(s) 127, 169
PpsI GAGTC 2 cut(s) 127, 169
PspFI CCCAGC 1 cut(s) 331
PspN4I GGNNCC 2 cut(s) 18, 283
PspPI GGNCC 1 cut(s) 139
PstI CTGCAG 1 cut(s) 361
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SatI GCNGC 3 cut(s) 110, 354, 357
Sau96I GGNCC 1 cut(s) 139
SchI GAGTC 2 cut(s) 128, 169
SetI ASST 8 cut(s) 10, 22, 35, 154, 161, 213, 327, 413
SfaNI GCATC 2 cut(s) 52, 173
SfcI CTRYAG 1 cut(s) 357
Sse9I AATT 1 cut(s) 113
SsiI CCGC 1 cut(s) 189
SspMI CTAG 1 cut(s) 412
TaaI ACNGT 3 cut(s) 100, 245, 320
TaiI ACGT 3 cut(s) 35, 213, 327
TasI AATT 1 cut(s) 113
TscAI CASTG 3 cut(s) 18, 250, 325
TseFI GTSAC 1 cut(s) 320
TseI GCWGC 3 cut(s) 109, 353, 356
Tsp45I GTSAC 1 cut(s) 320
TspDTI ATGAA 1 cut(s) 318
TspRI CASTG 3 cut(s) 18, 250, 325
Van91I CCANNNNNTGG 2 cut(s) 261, 291
XceI RCATGY 1 cut(s) 95
XspI CTAG 1 cut(s) 412
ZraI GACGTC 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.