RchiOBHm_Chr4g0386931

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000324
Physical Location & Seq
Reverse (-)
2258671 .. 2260042
1372 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36027

Sequence Viewer

Length: 471 bp
ATGGAGAAAACAATACCTTTGGCTATATCTGATTGGTTTCAGAGAGAAGTGGGAGATAAAGCAGTTAATCAATTGGAAAAATCAGTTAATTCAAAACTTGAAGATACTGTATCCAGTCAAATCGAGGCGCAGTTTCAAACATTGGGTAAACAAGCTCTTCAGGATGCTCTCAAGTCTAGCATGGAAGCTTCAGTGGTACCTGCCTTTGAGAAGTCATGTAAATCCATGTTTGAGCAAGTAGATGCCACGTTCCAGAAAGGAATGGTGGCTCAGCAGCATTTTGTGTCTGCACATTCGCCATTGGCCCATGCTTTAAGGGAAGCTATTAGCTCTGCATCATCAGTGACTCAAACCCTAAGCGGAGAACTGGCTGATGGTCAACGTAAGTTAGTAGCTCTTGCAGCTGCACGGGGAAACTCAAGTGCAGTAAATCCTGATTGTTGTTTCACCCTGTATAATGCATTGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

156

Amino Acids

16.81

Weight (kDa)

5.58

Isoelectric Point (pI)

25.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 208
Acc65I GGTACC 1 cut(s) 196
AccB1I GGYRCC 1 cut(s) 196
AciI CCGC 1 cut(s) 360
AcuI CTGAAG 2 cut(s) 143, 174
AfaI GTAC 1 cut(s) 198
AgsI TTSAA 3 cut(s) 93, 101, 137
AluBI AGCT 6 cut(s) 155, 188, 323, 330, 395, 404
AluI AGCT 6 cut(s) 155, 188, 323, 330, 395, 404
AoxI GGCC 1 cut(s) 303
ApeKI GCWGC 3 cut(s) 274, 401, 404
Asp718I GGTACC 1 cut(s) 196
AspLEI GCGC 1 cut(s) 130
AspS9I GGNCC 1 cut(s) 304
AsuHPI GGTGA 1 cut(s) 439
BanI GGYRCC 1 cut(s) 196
BbvI GCAGC 3 cut(s) 286, 391, 413
BccI CCATC 1 cut(s) 368
BciVI GTATCC 1 cut(s) 121
BfaI CTAG 1 cut(s) 177
BfuAI ACCTGC 1 cut(s) 208
BfuI GTATCC 1 cut(s) 121
BisI GCNGC 3 cut(s) 275, 402, 405
BlpI GCTNAGC 1 cut(s) 270
BlsI GCNGC 3 cut(s) 276, 403, 406
BmgT120I GGNCC 1 cut(s) 304
BmiI GGNNCC 1 cut(s) 198
BmsI GCATC 3 cut(s) 154, 232, 344
Bpu10I CCTNAGC 1 cut(s) 356
Bpu1102I GCTNAGC 1 cut(s) 270
BpuEI CTTGAG 2 cut(s) 155, 403
Bse1I ACTGG 2 cut(s) 114, 372
BseGI GGATG 1 cut(s) 169
BseMII CTCAG 1 cut(s) 284
BseNI ACTGG 2 cut(s) 114, 372
BseXI GCAGC 3 cut(s) 286, 391, 413
BsgI GTGCAG 3 cut(s) 273, 390, 444
BshFI GGCC 1 cut(s) 305
BshNI GGYRCC 1 cut(s) 196
BsnI GGCC 1 cut(s) 305
Bsp1720I GCTNAGC 1 cut(s) 270
BspACI CCGC 1 cut(s) 360
BspANI GGCC 1 cut(s) 305
BspCNI CTCAG 1 cut(s) 283
BspLI GGNNCC 1 cut(s) 198
BspMI ACCTGC 1 cut(s) 208
BspQI GCTCTTC 1 cut(s) 162
BspT107I GGYRCC 1 cut(s) 196
BsrI ACTGG 2 cut(s) 114, 372
Bst4CI ACNGT 1 cut(s) 109
Bst6I CTCTTC 1 cut(s) 162
BstDEI CTNAG 2 cut(s) 270, 356
BstF5I GGATG 1 cut(s) 169
BstHHI GCGC 1 cut(s) 130
BstMWI GCNNNNNNNGC 1 cut(s) 401
BstV1I GCAGC 3 cut(s) 286, 391, 413
BsuI GTATCC 1 cut(s) 121
BsuRI GGCC 1 cut(s) 305
BtsCI GGATG 1 cut(s) 169
BtsIMutI CAGTG 2 cut(s) 198, 348
BveI ACCTGC 1 cut(s) 208
CfoI GCGC 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 304
Csp6I GTAC 1 cut(s) 197
CviAII CATG 4 cut(s) 181, 216, 226, 308
CviQI GTAC 1 cut(s) 197
DdeI CTNAG 2 cut(s) 270, 356
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Eco57I CTGAAG 2 cut(s) 143, 174
EcoT22I ATGCAT 1 cut(s) 463
FaeI CATG 4 cut(s) 184, 219, 229, 311
FaiI YATR 6 cut(s) 26, 182, 217, 227, 309, 456
FatI CATG 4 cut(s) 180, 215, 225, 307
Fnu4HI GCNGC 3 cut(s) 275, 402, 405
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 3 cut(s) 275, 402, 405
FspBI CTAG 1 cut(s) 177
GlaI GCGC 1 cut(s) 129
GluI GCNGC 3 cut(s) 275, 402, 405
HaeIII GGCC 1 cut(s) 305
HhaI GCGC 1 cut(s) 130
Hin1II CATG 4 cut(s) 184, 219, 229, 311
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HincII GTYRAC 1 cut(s) 380
HindII GTYRAC 1 cut(s) 380
HindIII AAGCTT 1 cut(s) 186
HinfI GANTC 1 cut(s) 346
HphI GGTGA 1 cut(s) 439
Hpy166II GTNNAC 2 cut(s) 149, 380
Hpy188I TCNGA 2 cut(s) 31, 42
Hpy188III TCNNGA 3 cut(s) 161, 253, 434
Hpy8I GTNNAC 2 cut(s) 149, 380
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 2 cut(s) 248, 382
HpyCH4V TGCA 6 cut(s) 290, 335, 401, 407, 425, 461
HpyF10VI GCNNNNNNNGC 1 cut(s) 401
HpyF3I CTNAG 2 cut(s) 270, 356
HpySE526I ACGT 2 cut(s) 248, 382
Hsp92II CATG 4 cut(s) 184, 219, 229, 311
HspAI GCGC 1 cut(s) 128
KpnI GGTACC 1 cut(s) 200
LguI GCTCTTC 1 cut(s) 162
LpnPI CCDG 7 cut(s) 127, 146, 213, 266, 353, 447, 464
Lsp1109I GCAGC 3 cut(s) 286, 391, 413
LweI GCATC 3 cut(s) 154, 232, 344
MaeI CTAG 1 cut(s) 177
MaeII ACGT 2 cut(s) 248, 382
MaeIII GTNAC 1 cut(s) 343
MboII GAAGA 2 cut(s) 113, 149
MfeI CAATTG 1 cut(s) 71
MluCI AATT 2 cut(s) 71, 88
MlyI GAGTC 1 cut(s) 340
MnlI CCTC 1 cut(s) 118
Mph1103I ATGCAT 1 cut(s) 463
MseI TTAA 3 cut(s) 66, 87, 314
MspA1I CMGCKG 1 cut(s) 404
MunI CAATTG 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 401
NlaIII CATG 4 cut(s) 184, 219, 229, 311
NlaIV GGNNCC 1 cut(s) 198
NmuCI GTSAC 1 cut(s) 343
NsiI ATGCAT 1 cut(s) 463
PciSI GCTCTTC 1 cut(s) 162
PkrI GCNGC 3 cut(s) 276, 403, 406
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
PspN4I GGNNCC 1 cut(s) 198
PspPI GGNCC 1 cut(s) 304
PvuII CAGCTG 1 cut(s) 404
RsaI GTAC 1 cut(s) 198
RsaNI GTAC 1 cut(s) 197
SapI GCTCTTC 1 cut(s) 162
SaqAI TTAA 3 cut(s) 66, 87, 314
SatI GCNGC 3 cut(s) 275, 402, 405
Sau96I GGNCC 1 cut(s) 304
SchI GAGTC 1 cut(s) 340
SfaNI GCATC 3 cut(s) 154, 232, 344
SmlI CTYRAG 2 cut(s) 170, 418
SmoI CTYRAG 2 cut(s) 170, 418
Sse9I AATT 2 cut(s) 71, 88
SsiI CCGC 1 cut(s) 360
SspMI CTAG 1 cut(s) 177
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 2 cut(s) 251, 385
TaqI TCGA 1 cut(s) 123
TasI AATT 2 cut(s) 71, 88
Tru1I TTAA 3 cut(s) 66, 87, 314
Tru9I TTAA 3 cut(s) 66, 87, 314
TscAI CASTG 2 cut(s) 198, 348
TseFI GTSAC 1 cut(s) 343
TseI GCWGC 3 cut(s) 274, 401, 404
Tsp45I GTSAC 1 cut(s) 343
TspRI CASTG 2 cut(s) 198, 348
XspI CTAG 1 cut(s) 177
Zsp2I ATGCAT 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.