Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010693.1

Orthogroup ID

OG0000324

Physical Location & Seq

Genomic Coordinates Forward (+)

46436 .. 50099

Gene Structure 3664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010693.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

atgcaaagtcgagaaaacagaaatggaaaagtatgcaagcatcaggtccattttccccaatcaccaggtgggagttcaagtcccccctccagagaagctgcatttcctcaaattatggccaggcaggatatgatgaatcagctaatgactatgcaaaaagaattgcaaaagctgatgacaatgatggttaccgtcccaattacaaatgaaggcaaacgattagaggcggctctcggttggagtatggagaaggctgtaaaggccaataatattgctttgagggctctgtctcaagaagagaatgcaaagaatgagaaattattgcgagaccgtactcaacaagtaactagtttgattgtgaacaaggacttatctgattgctttcagagagcagtgggagataaagcagttaatcaattggaaaaatcagctaactcaagacttgaacctactgcattcaggcaaatcgaggcgcagtttcaaacatcggatgccacattccagaaagtaatggttgaacatgcaactgtggctcagcagcattttgagtctgcacatttgccgttggcccatgctttaagaattaaggtgtgggacattgattatgcccagaaggtgtttgatgaaatgcttgagaaaaatactgtgtcgtggactagtttgatttgtggttatggtaggaggaatatgccaaaggaggctgttttctttgtttccgagagggtggctgccgggattaatcccaatttggtgacaatggggtgcgtcatttctgcttgtgcaaagtcgaaggatgcttcgttgagtgagagggtgtgtgcttacattggggagtctggactgaagaaccgaggaataaaaggagatagggtgaccatggtggaggttgcatctgcctgtggatatctaggagctcttgatcttgcaaagtggactcatgcttgtatcgaaaaaaatgaaattaactgtgacatgcggctcgggacagctttagttgacatgtttgctagatgtggcgaccctcaaagtgcaataaaggtgttcgataacatgacaagaagagatgtcaaacaacaggcattgaagcaatggccatgcaaggaaatggggagcgagcttcttcgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

375

Amino Acids

41.94

Weight (kDa)

8.89

Isoelectric Point (pI)

38.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca	FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica	MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica	Prupe.6G032100_v2.0.a1
pyrus_communis	pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis	RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata	RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora	Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii	Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa	Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha	Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana	Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	227, 976
AcoI	YGGCCR	2 cut(s)	117, 1091
AcuI	CTGAAG	1 cut(s)	863
AdeI	CACNNNGTG	1 cut(s)	68
AfaI	GTAC	1 cut(s)	334
AflIII	ACRYGT	1 cut(s)	999
AgsI	TTSAA	5 cut(s)	78, 446, 482, 518, 1084
AhlI	ACTAGT	2 cut(s)	347, 656
AjnI	CCWGG	2 cut(s)	64, 119
AluBI	AGCT	7 cut(s)	98, 142, 172, 431, 914, 989, 1117
AluI	AGCT	7 cut(s)	98, 142, 172, 431, 914, 989, 1117
Alw21I	GWGCWC	1 cut(s)	916
Alw26I	GTCTC	2 cut(s)	294, 321
Ama87I	CYCGRG	1 cut(s)	980
AoxI	GGCC	4 cut(s)	117, 261, 567, 1091
ApeKI	GCWGC	3 cut(s)	98, 538, 728
AseI	ATTAAT	1 cut(s)	738
AspLEI	GCGC	1 cut(s)	475
AspS9I	GGNCC	2 cut(s)	46, 568
AsuC2I	CCSGG	1 cut(s)	733
AsuHPI	GGTGA	3 cut(s)	54, 763, 883
AvaI	CYCGRG	1 cut(s)	980
AvaII	GGWCC	1 cut(s)	46
BalI	TGGCCA	2 cut(s)	119, 1093
BanII	GRGCYC	2 cut(s)	286, 916
Bbv12I	GWGCWC	1 cut(s)	916
BbvI	GCAGC	3 cut(s)	85, 550, 715
BccI	CCATC	1 cut(s)	178
BceAI	ACGGC	1 cut(s)	547
BciT130I	CCWGG	2 cut(s)	66, 121
BcnI	CCSGG	1 cut(s)	733
BcoDI	GTCTC	2 cut(s)	294, 321
BcuI	ACTAGT	2 cut(s)	347, 656
BfaI	CTAG	4 cut(s)	348, 657, 908, 1008
BisI	GCNGC	5 cut(s)	99, 228, 539, 729, 977
BlpI	GCTNAGC	1 cut(s)	534
BlsI	GCNGC	5 cut(s)	100, 229, 540, 730, 978
Bme1390I	CCNGG	3 cut(s)	66, 121, 733
Bme18I	GGWCC	1 cut(s)	46
BmeT110I	CYCGRG	1 cut(s)	980
BmgT120I	GGNCC	2 cut(s)	46, 568
BmrFI	CCNGG	3 cut(s)	66, 121, 733
BmsI	GCATC	4 cut(s)	49, 481, 784, 899
BpmI	CTGGAG	1 cut(s)	73
Bpu1102I	GCTNAGC	1 cut(s)	534
BpuEI	CTTGAG	3 cut(s)	276, 421, 653
BpuMI	CCSGG	1 cut(s)	733
BsaI	GGTCTC	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	850, 876
BsaXI	ACNNNNNCTCC	4 cut(s)	64, 94, 855, 885
Bse3DI	GCAATG	1 cut(s)	1094
BseBI	CCWGG	2 cut(s)	66, 121
BseDI	CCNNGG	2 cut(s)	850, 876
BseGI	GGATG	2 cut(s)	496, 799
BseMI	GCAATG	1 cut(s)	1094
BseMII	CTCAG	1 cut(s)	548
BseXI	GCAGC	3 cut(s)	85, 550, 715
BsgI	GTGCAG	1 cut(s)	537
BshFI	GGCC	4 cut(s)	119, 263, 569, 1093
BsiHKAI	GWGCWC	1 cut(s)	916
BsiHKCI	CYCGRG	1 cut(s)	980
BsiSI	CCGG	1 cut(s)	732
BslFI	GGGAC	4 cut(s)	66, 179, 608, 997
BsmAI	GTCTC	2 cut(s)	294, 321
BsmFI	GGGAC	4 cut(s)	66, 179, 608, 997
BsmI	GAATGC	2 cut(s)	307, 455
BsnI	GGCC	4 cut(s)	119, 263, 569, 1093
Bso31I	GGTCTC	1 cut(s)	321
BsoBI	CYCGRG	1 cut(s)	980
Bsp1286I	GDGCHC	2 cut(s)	286, 916
Bsp143I	GATC	1 cut(s)	919
Bsp1720I	GCTNAGC	1 cut(s)	534
Bsp19I	CCATGG	1 cut(s)	876
BspACI	CCGC	2 cut(s)	227, 976
BspANI	GGCC	4 cut(s)	119, 263, 569, 1093
BspCNI	CTCAG	1 cut(s)	547
BspTNI	GGTCTC	1 cut(s)	321
BsrDI	GCAATG	1 cut(s)	1094
BssECI	CCNNGG	2 cut(s)	850, 876
BssMI	GATC	1 cut(s)	919
BssT1I	CCWWGG	1 cut(s)	876
Bst2UI	CCWGG	2 cut(s)	66, 121
Bst4CI	ACNGT	5 cut(s)	193, 332, 529, 646, 968
Bst6I	CTCTTC	2 cut(s)	291, 1054
BstC8I	GCNNGC	2 cut(s)	38, 1115
BstDEI	CTNAG	1 cut(s)	534
BstDSI	CCRYGG	1 cut(s)	876
BstEII	GGTNACC	2 cut(s)	187, 871
BstF5I	GGATG	2 cut(s)	496, 799
BstHHI	GCGC	1 cut(s)	475
BstKTI	GATC	1 cut(s)	922
BstMAI	GTCTC	2 cut(s)	294, 321
BstMBI	GATC	1 cut(s)	919
BstMWI	GCNNNNNNNGC	3 cut(s)	260, 281, 530
BstNI	CCWGG	2 cut(s)	66, 121
BstNSI	RCATGY	3 cut(s)	524, 976, 1003
BstPI	GGTNACC	2 cut(s)	187, 871
BstSCI	CCNGG	3 cut(s)	64, 119, 731
BstV1I	GCAGC	3 cut(s)	85, 550, 715
BsuRI	GGCC	4 cut(s)	119, 263, 569, 1093
BtgI	CCRYGG	1 cut(s)	876
BtsCI	GGATG	2 cut(s)	496, 799
BtsI	GCAGTG	1 cut(s)	399
BtsIMutI	CAGTG	1 cut(s)	399
Cac8I	GCNNGC	2 cut(s)	38, 1115
CfoI	GCGC	1 cut(s)	475
Cfr13I	GGNCC	2 cut(s)	46, 568
CseI	GACGC	1 cut(s)	754
CsiI	ACCWGGT	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	333
CviAII	CATG	8 cut(s)	521, 572, 877, 938, 973, 1000, 1051, 1095
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	1 cut(s)	534
DpnI	GATC	1 cut(s)	921
DpnII	GATC	1 cut(s)	919
DraIII	CACNNNGTG	1 cut(s)	68
EaeI	YGGCCR	2 cut(s)	117, 1091
Eam1104I	CTCTTC	2 cut(s)	291, 1054
EarI	CTCTTC	2 cut(s)	291, 1054
Ecl136II	GAGCTC	1 cut(s)	914
Eco130I	CCWWGG	1 cut(s)	876
Eco24I	GRGCYC	2 cut(s)	286, 916
Eco31I	GGTCTC	1 cut(s)	321
Eco32I	GATATC	1 cut(s)	905
Eco47I	GGWCC	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	914
Eco57I	CTGAAG	1 cut(s)	863
Eco88I	CYCGRG	1 cut(s)	980
Eco91I	GGTNACC	2 cut(s)	187, 871
EcoICRI	GAGCTC	1 cut(s)	914
EcoO65I	GGTNACC	2 cut(s)	187, 871
EcoRII	CCWGG	2 cut(s)	64, 119
EcoRV	GATATC	1 cut(s)	905
EcoT14I	CCWWGG	1 cut(s)	876
EcoT38I	GRGCYC	2 cut(s)	286, 916
ErhI	CCWWGG	1 cut(s)	876
FaeI	CATG	8 cut(s)	524, 575, 880, 941, 976, 1003, 1054, 1098
FaqI	GGGAC	4 cut(s)	66, 179, 608, 997
FatI	CATG	8 cut(s)	520, 571, 876, 937, 972, 999, 1050, 1094
Fnu4HI	GCNGC	5 cut(s)	99, 228, 539, 729, 977
FokI	GGATG	2 cut(s)	503, 806
FriOI	GRGCYC	2 cut(s)	286, 916
Fsp4HI	GCNGC	5 cut(s)	99, 228, 539, 729, 977
FspBI	CTAG	4 cut(s)	348, 657, 908, 1008
GlaI	GCGC	1 cut(s)	474
GluI	GCNGC	5 cut(s)	99, 228, 539, 729, 977
GsuI	CTGGAG	1 cut(s)	73
HaeIII	GGCC	4 cut(s)	119, 263, 569, 1093
HapII	CCGG	1 cut(s)	732
HgaI	GACGC	1 cut(s)	754
HhaI	GCGC	1 cut(s)	475
Hin1II	CATG	8 cut(s)	524, 575, 880, 941, 976, 1003, 1054, 1098
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HincII	GTYRAC	1 cut(s)	997
HindII	GTYRAC	1 cut(s)	997
HinfI	GANTC	4 cut(s)	136, 548, 833, 934
HpaII	CCGG	1 cut(s)	732
HphI	GGTGA	3 cut(s)	54, 763, 883
Hpy166II	GTNNAC	4 cut(s)	361, 654, 933, 997
Hpy188I	TCNGA	4 cut(s)	376, 387, 490, 718
Hpy188III	TCNNGA	8 cut(s)	11, 90, 293, 438, 502, 837, 917, 982
Hpy8I	GTNNAC	4 cut(s)	361, 654, 933, 997
HpyAV	CCTTC	4 cut(s)	203, 244, 607, 784
HpyCH4III	ACNGT	5 cut(s)	193, 332, 529, 646, 968
HpyF10VI	GCNNNNNNNGC	3 cut(s)	260, 281, 530
HpyF3I	CTNAG	1 cut(s)	534
Hsp92II	CATG	8 cut(s)	524, 575, 880, 941, 976, 1003, 1054, 1098
HspAI	GCGC	1 cut(s)	473
Kzo9I	GATC	1 cut(s)	919
LmnI	GCTCC	2 cut(s)	911, 1110
Lsp1109I	GCAGC	3 cut(s)	85, 550, 715
LweI	GCATC	4 cut(s)	49, 481, 784, 899
MabI	ACCWGGT	1 cut(s)	64
MaeI	CTAG	4 cut(s)	348, 657, 908, 1008
MaeIII	GTNAC	5 cut(s)	187, 343, 751, 871, 968
MalI	GATC	1 cut(s)	921
MboI	GATC	1 cut(s)	919
MboII	GAAGA	4 cut(s)	308, 856, 1071, 1112
MfeI	CAATTG	1 cut(s)	416
MhlI	GDGCHC	2 cut(s)	286, 916
MlsI	TGGCCA	2 cut(s)	119, 1093
MluCI	AATT	8 cut(s)	111, 161, 198, 317, 416, 582, 745, 960
MluNI	TGGCCA	2 cut(s)	119, 1093
MlyI	GAGTC	3 cut(s)	557, 842, 928
MmeI	TCCRAC	1 cut(s)	218
Mox20I	TGGCCA	2 cut(s)	119, 1093
MscI	TGGCCA	2 cut(s)	119, 1093
MseI	TTAA	5 cut(s)	411, 578, 585, 738, 963
Msp20I	TGGCCA	2 cut(s)	119, 1093
MspI	CCGG	1 cut(s)	732
MspR9I	CCNGG	3 cut(s)	66, 121, 733
MunI	CAATTG	1 cut(s)	416
Mva1269I	GAATGC	2 cut(s)	307, 455
MvaI	CCWGG	2 cut(s)	66, 121
MwoI	GCNNNNNNNGC	3 cut(s)	260, 281, 530
NciI	CCSGG	1 cut(s)	733
NcoI	CCATGG	1 cut(s)	876
NdeII	GATC	1 cut(s)	919
NlaIII	CATG	8 cut(s)	524, 575, 880, 941, 976, 1003, 1054, 1098
NmuCI	GTSAC	3 cut(s)	751, 871, 968
NspI	RCATGY	3 cut(s)	524, 976, 1003
PciI	ACATGT	1 cut(s)	999
PctI	GAATGC	2 cut(s)	307, 455
PfeI	GAWTC	1 cut(s)	136
PkrI	GCNGC	5 cut(s)	100, 229, 540, 730, 978
PleI	GAGTC	3 cut(s)	556, 841, 928
PpsI	GAGTC	3 cut(s)	556, 841, 928
PscI	ACATGT	1 cut(s)	999
PshBI	ATTAAT	1 cut(s)	738
Psp124BI	GAGCTC	1 cut(s)	916
Psp6I	CCWGG	2 cut(s)	64, 119
PspEI	GGTNACC	2 cut(s)	187, 871
PspGI	CCWGG	2 cut(s)	64, 119
PspPI	GGNCC	2 cut(s)	46, 568
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
SacI	GAGCTC	1 cut(s)	916
SaqAI	TTAA	5 cut(s)	411, 578, 585, 738, 963
SatI	GCNGC	5 cut(s)	99, 228, 539, 729, 977
Sau3AI	GATC	1 cut(s)	919
Sau96I	GGNCC	2 cut(s)	46, 568
SchI	GAGTC	3 cut(s)	557, 842, 928
ScrFI	CCNGG	3 cut(s)	66, 121, 733
SduI	GDGCHC	2 cut(s)	286, 916
SexAI	ACCWGGT	1 cut(s)	64
SfaNI	GCATC	4 cut(s)	49, 481, 784, 899
SinI	GGWCC	1 cut(s)	46
SmlI	CTYRAG	3 cut(s)	291, 436, 632
SmoI	CTYRAG	3 cut(s)	291, 436, 632
SpeI	ACTAGT	2 cut(s)	347, 656
Sse9I	AATT	8 cut(s)	111, 161, 198, 317, 416, 582, 745, 960
SsiI	CCGC	2 cut(s)	227, 976
SspI	AATATT	1 cut(s)	271
SspMI	CTAG	4 cut(s)	348, 657, 908, 1008
SstI	GAGCTC	1 cut(s)	916
StyD4I	CCNGG	3 cut(s)	64, 119, 731
StyI	CCWWGG	1 cut(s)	876
TaaI	ACNGT	5 cut(s)	193, 332, 529, 646, 968
TaqI	TCGA	6 cut(s)	10, 468, 788, 948, 1044, 1123
TasI	AATT	8 cut(s)	111, 161, 198, 317, 416, 582, 745, 960
TauI	GCSGC	2 cut(s)	230, 979
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	5 cut(s)	411, 578, 585, 738, 963
Tru9I	TTAA	5 cut(s)	411, 578, 585, 738, 963
TscAI	CASTG	1 cut(s)	399
TseFI	GTSAC	3 cut(s)	751, 871, 968
TseI	GCWGC	3 cut(s)	98, 538, 728
Tsp45I	GTSAC	3 cut(s)	751, 871, 968
TspDTI	ATGAA	4 cut(s)	149, 222, 639, 972
TspRI	CASTG	1 cut(s)	399
VpaK11BI	GGWCC	1 cut(s)	46
VspI	ATTAAT	1 cut(s)	738
XceI	RCATGY	3 cut(s)	524, 976, 1003
XcmI	CCANNNNNNNNNTGG	1 cut(s)	65
XspI	CTAG	4 cut(s)	348, 657, 908, 1008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.