Rorug05G0437200

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000324
Physical Location & Seq
Reverse (-)
60705765 .. 60710290
4526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0437200.1

Sequence Viewer

Length: 1461 bp
ATGTTGGATCTTAATCTCAGCGTGGTGGGATCGTCGTCGGAGCAAAACGACCTCTTCGTCGTCGGTTCGGTTCCCGGTATGTTTCCGGAAGGCTCCGGCAGCGCGACGCAAATGGACGAGTCCGGGACGTCGAACTCGTCCGTCGTCAATGCCGACGCCTCCAGCACCAACGACGACTCGTCCTCCGCACGCGCCGCCGTGACGACGTTCAACTTCGATATTCTCAAGGTCGGTGGAGGAGAAGGAGACGACGTCGTTGTGACGAAGGAGCTGTTTCCGGTGAACAGTTGGCCGGGGGAGGGGCAGGGGCAGCAGTACTCGCCGGCATCATCGTCGGCGAGGCACAACTTGATCGAGCTTGGCGGGCCCGCGGAGGTGAGGTTGGTTGAGCAGAAACAGCCACAACCACCGCCACCGCCACCGCCACCACAACAACCGCAGGTGAAGAAGAGCAGGAGAGGGCCCAGGTCTCGGAGTTCTCAGTACAGAGGGGTCACTTTCTATAGAAGAACTGGTAGATGGGAATCGCATATTTGGGATTGTGGCAAACAAGTGTATTTGGGTGGATTTGACACTGCTCATGCTGCTGCTAGAGCCTACGATCGAGCTGCGATTAAGTTCAGGGGAGTTGATGCTGATATCAATTACAATCTCAGTGATTATGAGGAGGATATGAAACAGATGAAGAATTTGACCAAGGAAGAATTCGTGCACATACTACGTCGGCAGAGCACTGGTTTCTCGAGGGGGAGCTCAAGATATAGAGGGGTTACACTGCACAAATGTGGTCGTTGGGAAGCTCGAATGGGGCAATTCCTTGGCAAAAAGTATATATATCTTGGGCTATTCGACAGTGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAATGTAATGGAAGGGAAGCTGTCACCAACTTTGAGGCAAGTACTTATGAAGGGGAGATGATATCTGACGCTGTTAATGAAGATGGCAATCACAATCTTGATCTGAATTTGGGAATATCTCCTCCTTCATTTGGTAATGGTCAGAAGCAAGGCGAGGGGCATCTTCAGTTCCATTCTGGCCCTTATGAGGGGCAAAATGGAAAGAATATGAGGATGGTGCCCAATGCAAATGCAACAATGACTGCTCCACCTTTCAGAGGCGTAATAATGACATCAGAGCACCCTCCTTTATGGAATGGTGTATATCCTAGTTTCCTTCCGAATCAGGAAATAGCAATAGAGAAGAGAATTGCATTAGGATCTCAAGGACCTCCCAATTGGGCTTGGCAAATGCATGGCCAGGTCAGTGCCCCAATGCCACTGTTCTCTACTGCAGCATCATCAGGATTCTCATTTACAGCTACCACTCCGTCCGCTGCTGTCCTCCCCGTAATCCCCTCGAACCAAACCGCCCTCAATCTCTGTTTTACATCTTCAGCCACGGCCGCCCACCATACGTCTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

486

Amino Acids

52.78

Weight (kDa)

6.33

Isoelectric Point (pI)

51.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 161 - 209 6.2e-10 AP2 domain
AP2 PF00847 252 - 302 1.1e-08 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 430
AasI GACNNNNNNGTC 1 cut(s) 56
AatII GACGTC 2 cut(s) 131, 255
Acc36I ACCTGC 1 cut(s) 430
AccB1I GGYRCC 1 cut(s) 1111
AccII CGCG 3 cut(s) 104, 192, 371
AccIII TCCGGA 1 cut(s) 85
AclWI GGATC 3 cut(s) 15, 37, 1261
AcoI YGGCCR 3 cut(s) 290, 1291, 1437
AcsI RAATTY 3 cut(s) 688, 704, 1000
AcuI CTGAAG 2 cut(s) 1043, 1413
AcyI GRCGYC 3 cut(s) 128, 156, 252
AfaI GTAC 3 cut(s) 317, 485, 937
AfiI CCNNNNNNNGG 6 cut(s) 299, 471, 1025, 1081, 1082, 1151
AgsI TTSAA 1 cut(s) 211
AhdI GACNNNNNGTC 1 cut(s) 178
AjnI CCWGG 2 cut(s) 464, 1293
AjuI GAANNNNNNNTTGG 2 cut(s) 689, 721
AleI CACNNNNGTG 1 cut(s) 783
AluBI AGCT 9 cut(s) 271, 358, 608, 753, 800, 866, 890, 914, 1355
AluI AGCT 9 cut(s) 271, 358, 608, 753, 800, 866, 890, 914, 1355
Alw21I GWGCWC 4 cut(s) 714, 734, 755, 1176
Alw26I GTCTC 2 cut(s) 240, 474
Alw44I GTGCAC 1 cut(s) 710
AlwI GGATC 3 cut(s) 15, 37, 1261
Ama87I CYCGRG 1 cut(s) 742
Aor13HI TCCGGA 1 cut(s) 85
AoxI GGCC 6 cut(s) 290, 365, 461, 1072, 1291, 1437
ApaI GGGCCC 2 cut(s) 369, 465
ApaLI GTGCAC 1 cut(s) 710
ApeKI GCWGC 9 cut(s) 99, 310, 584, 587, 608, 866, 887, 1328, 1370
ApoI RAATTY 3 cut(s) 688, 704, 1000
AspLEI GCGC 2 cut(s) 104, 194
AspS9I GGNCC 6 cut(s) 365, 366, 461, 462, 1073, 1262
AsuC2I CCSGG 3 cut(s) 75, 124, 294
AsuHPI GGTGA 4 cut(s) 292, 388, 454, 910
AvaI CYCGRG 1 cut(s) 742
AvaII GGWCC 1 cut(s) 1262
BaeGI GKGCMC 5 cut(s) 369, 465, 714, 1116, 1306
BalI TGGCCA 1 cut(s) 1293
BanI GGYRCC 1 cut(s) 1111
BanII GRGCYC 3 cut(s) 369, 465, 755
Bbv12I GWGCWC 4 cut(s) 714, 734, 755, 1176
BbvI GCAGC 9 cut(s) 111, 322, 571, 574, 595, 853, 899, 1340, 1357
BccI CCATC 3 cut(s) 513, 971, 1102
BceAI ACGGC 2 cut(s) 182, 1452
BcgI CGANNNNNNTGC 4 cut(s) 315, 349, 590, 624
BciT130I CCWGG 2 cut(s) 466, 1295
BcnI CCSGG 3 cut(s) 75, 124, 294
BcoDI GTCTC 2 cut(s) 240, 474
BfaI CTAG 2 cut(s) 591, 1203
BfmI CTRYAG 2 cut(s) 502, 1326
BfuAI ACCTGC 1 cut(s) 430
BmcAI AGTACT 2 cut(s) 317, 937
Bme1390I CCNGG 5 cut(s) 75, 124, 294, 466, 1295
Bme18I GGWCC 1 cut(s) 1262
BmeRI GACNNNNNGTC 1 cut(s) 178
BmeT110I CYCGRG 1 cut(s) 742
BmgT120I GGNCC 6 cut(s) 365, 366, 461, 462, 1073, 1262
BmiI GGNNCC 5 cut(s) 72, 94, 367, 463, 1113
BmrFI CCNGG 5 cut(s) 75, 124, 294, 466, 1295
BmsI GCATC 4 cut(s) 335, 622, 1063, 1340
BpmI CTGGAG 1 cut(s) 145
BpuEI CTTGAG 3 cut(s) 209, 739, 1242
BpuMI CCSGG 3 cut(s) 75, 124, 294
BsaBI GATNNNNATC 3 cut(s) 12, 523, 981
BsaHI GRCGYC 3 cut(s) 128, 156, 252
BsaI GGTCTC 1 cut(s) 474
BsaJI CCNNGG 6 cut(s) 293, 369, 464, 696, 817, 1434
BsaWI WCCGGW 2 cut(s) 85, 277
BsaXI ACNNNNNCTCC 6 cut(s) 167, 197, 237, 267, 365, 395
Bsc4I CCNNNNNNNGG 6 cut(s) 299, 471, 1025, 1081, 1082, 1151
Bse118I RCCGGY 1 cut(s) 322
Bse1I ACTGG 2 cut(s) 517, 739
Bse8I GATNNNNATC 3 cut(s) 12, 523, 981
BseAI TCCGGA 1 cut(s) 85
BseBI CCWGG 2 cut(s) 466, 1295
BseDI CCNNGG 6 cut(s) 293, 369, 464, 696, 817, 1434
BseGI GGATG 1 cut(s) 1113
BseJI GATNNNNATC 3 cut(s) 12, 523, 981
BseLI CCNNNNNNNGG 6 cut(s) 299, 471, 1025, 1081, 1082, 1151
BseMII CTCAG 3 cut(s) 31, 494, 667
BseNI ACTGG 2 cut(s) 517, 739
BseRI GAGGAG 3 cut(s) 252, 680, 1005
BseSI GKGCMC 5 cut(s) 369, 465, 714, 1116, 1306
BseX3I CGGCCG 1 cut(s) 1437
BseXI GCAGC 9 cut(s) 111, 322, 571, 574, 595, 853, 899, 1340, 1357
BsgI GTGCAG 1 cut(s) 761
Bsh1236I CGCG 3 cut(s) 104, 192, 371
Bsh1285I CGRYCG 2 cut(s) 604, 1440
BshFI GGCC 6 cut(s) 292, 367, 463, 1074, 1293, 1439
BshNI GGYRCC 1 cut(s) 1111
BsiEI CGRYCG 2 cut(s) 604, 1440
BsiHKAI GWGCWC 4 cut(s) 714, 734, 755, 1176
BsiHKCI CYCGRG 1 cut(s) 742
BsiSI CCGG 7 cut(s) 75, 86, 96, 123, 278, 293, 323
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 6 cut(s) 299, 471, 1025, 1081, 1082, 1151
BsmAI GTCTC 2 cut(s) 240, 474
BsmBI CGTCTC 1 cut(s) 240
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 6 cut(s) 292, 367, 463, 1074, 1293, 1439
Bso31I GGTCTC 1 cut(s) 474
BsoBI CYCGRG 1 cut(s) 742
Bsp120I GGGCCC 2 cut(s) 365, 461
Bsp1286I GDGCHC 8 cut(s) 369, 465, 714, 734, 755, 1116, 1176, 1306
Bsp13I TCCGGA 1 cut(s) 85
Bsp143I GATC 6 cut(s) 7, 29, 351, 601, 994, 1253
BspANI GGCC 6 cut(s) 292, 367, 463, 1074, 1293, 1439
BspCNI CTCAG 3 cut(s) 30, 493, 666
BspEI TCCGGA 1 cut(s) 85
BspFNI CGCG 3 cut(s) 104, 192, 371
BspLI GGNNCC 5 cut(s) 72, 94, 367, 463, 1113
BspMAI CTGCAG 1 cut(s) 1330
BspMI ACCTGC 1 cut(s) 430
BspPI GGATC 3 cut(s) 15, 37, 1261
BspQI GCTCTTC 1 cut(s) 443
BspT107I GGYRCC 1 cut(s) 1111
BspTNI GGTCTC 1 cut(s) 474
BsrFI RCCGGY 1 cut(s) 322
BsrI ACTGG 2 cut(s) 517, 739
BssAI RCCGGY 1 cut(s) 322
BssECI CCNNGG 6 cut(s) 293, 369, 464, 696, 817, 1434
BssMI GATC 6 cut(s) 7, 29, 351, 601, 994, 1253
BssNI GRCGYC 3 cut(s) 128, 156, 252
BssT1I CCWWGG 2 cut(s) 696, 817
Bst2UI CCWGG 2 cut(s) 466, 1295
Bst4CI ACNGT 3 cut(s) 287, 854, 1317
Bst6I CTCTTC 3 cut(s) 59, 443, 1232
BstACI GRCGYC 3 cut(s) 128, 156, 252
BstC8I GCNNGC 4 cut(s) 190, 324, 365, 369
BstDEI CTNAG 3 cut(s) 17, 480, 653
BstDSI CCRYGG 2 cut(s) 369, 1434
BstENI CCTNNNNNAGG 1 cut(s) 1149
BstF5I GGATG 1 cut(s) 1113
BstFNI CGCG 3 cut(s) 104, 192, 371
BstHHI GCGC 2 cut(s) 104, 194
BstKTI GATC 6 cut(s) 10, 32, 354, 604, 997, 1256
BstMAI GTCTC 2 cut(s) 240, 474
BstMBI GATC 6 cut(s) 7, 29, 351, 601, 994, 1253
BstMCI CGRYCG 2 cut(s) 604, 1440
BstNI CCWGG 2 cut(s) 466, 1295
BstSCI CCNGG 5 cut(s) 73, 122, 292, 464, 1293
BstSFI CTRYAG 2 cut(s) 502, 1326
BstSLI GKGCMC 5 cut(s) 369, 465, 714, 1116, 1306
BstUI CGCG 3 cut(s) 104, 192, 371
BstV1I GCAGC 9 cut(s) 111, 322, 571, 574, 595, 853, 899, 1340, 1357
BstX2I RGATCY 2 cut(s) 7, 1253
BstYI RGATCY 2 cut(s) 7, 1253
BstZI CGGCCG 1 cut(s) 1437
BsuRI GGCC 6 cut(s) 292, 367, 463, 1074, 1293, 1439
BtgI CCRYGG 2 cut(s) 369, 1434
BtsCI GGATG 1 cut(s) 1113
BtsI GCAGTG 2 cut(s) 573, 773
BtsIMutI CAGTG 7 cut(s) 573, 661, 732, 773, 859, 1306, 1313
BveI ACCTGC 1 cut(s) 430
Cac8I GCNNGC 4 cut(s) 190, 324, 365, 369
CfoI GCGC 2 cut(s) 104, 194
Cfr10I RCCGGY 1 cut(s) 322
Cfr13I GGNCC 6 cut(s) 365, 366, 461, 462, 1073, 1262
Cfr42I CCGCGG 1 cut(s) 372
CseI GACGC 3 cut(s) 115, 164, 971
Csp6I GTAC 3 cut(s) 316, 484, 936
CspCI CAANNNNNGTGG 2 cut(s) 214, 249
CviAII CATG 2 cut(s) 581, 1289
CviQI GTAC 3 cut(s) 316, 484, 936
DdeI CTNAG 3 cut(s) 17, 480, 653
DpnI GATC 6 cut(s) 9, 31, 353, 603, 996, 1255
DpnII GATC 6 cut(s) 7, 29, 351, 601, 994, 1253
DrdI GACNNNNNNGTC 1 cut(s) 56
DriI GACNNNNNGTC 1 cut(s) 178
DseDI GACNNNNNNGTC 1 cut(s) 56
EaeI YGGCCR 3 cut(s) 290, 1291, 1437
EagI CGGCCG 1 cut(s) 1437
Eam1104I CTCTTC 3 cut(s) 59, 443, 1232
Eam1105I GACNNNNNGTC 1 cut(s) 178
EarI CTCTTC 3 cut(s) 59, 443, 1232
Ecl136II GAGCTC 1 cut(s) 753
EclXI CGGCCG 1 cut(s) 1437
Eco130I CCWWGG 2 cut(s) 696, 817
Eco24I GRGCYC 3 cut(s) 369, 465, 755
Eco31I GGTCTC 1 cut(s) 474
Eco32I GATATC 2 cut(s) 640, 957
Eco47I GGWCC 1 cut(s) 1262
Eco52I CGGCCG 1 cut(s) 1437
Eco53kI GAGCTC 1 cut(s) 753
Eco57I CTGAAG 2 cut(s) 1043, 1413
Eco88I CYCGRG 1 cut(s) 742
EcoICRI GAGCTC 1 cut(s) 753
EcoNI CCTNNNNNAGG 1 cut(s) 1149
EcoO109I RGGNCCY 2 cut(s) 461, 1262
EcoRI GAATTC 1 cut(s) 704
EcoRII CCWGG 2 cut(s) 464, 1293
EcoRV GATATC 2 cut(s) 640, 957
EcoT14I CCWWGG 2 cut(s) 696, 817
EcoT22I ATGCAT 1 cut(s) 1290
EcoT38I GRGCYC 3 cut(s) 369, 465, 755
ErhI CCWWGG 2 cut(s) 696, 817
Esp3I CGTCTC 1 cut(s) 240
FaeI CATG 2 cut(s) 584, 1292
FaqI GGGAC 1 cut(s) 139
FatI CATG 2 cut(s) 580, 1288
FauI CCCGC 2 cut(s) 356, 376
FokI GGATG 1 cut(s) 1120
FriOI GRGCYC 3 cut(s) 369, 465, 755
FspBI CTAG 2 cut(s) 591, 1203
GlaI GCGC 2 cut(s) 103, 193
GsuI CTGGAG 1 cut(s) 145
HaeIII GGCC 6 cut(s) 292, 367, 463, 1074, 1293, 1439
HapII CCGG 7 cut(s) 75, 86, 96, 123, 278, 293, 323
HgaI GACGC 3 cut(s) 115, 164, 971
HhaI GCGC 2 cut(s) 104, 194
Hin1I GRCGYC 3 cut(s) 128, 156, 252
Hin1II CATG 2 cut(s) 584, 1292
Hin6I GCGC 2 cut(s) 102, 192
HinP1I GCGC 2 cut(s) 102, 192
HinfI GANTC 5 cut(s) 119, 176, 524, 1216, 1341
HpaII CCGG 7 cut(s) 75, 86, 96, 123, 278, 293, 323
HphI GGTGA 4 cut(s) 292, 388, 454, 910
Hpy166II GTNNAC 2 cut(s) 283, 712
Hpy188I TCNGA 8 cut(s) 40, 474, 961, 999, 1038, 1151, 1171, 1215
Hpy188III TCNNGA 6 cut(s) 86, 742, 756, 992, 1220, 1338
Hpy8I GTNNAC 2 cut(s) 283, 712
HpyAV CCTTC 7 cut(s) 83, 236, 259, 900, 938, 1029, 1220
HpyCH4III ACNGT 3 cut(s) 287, 854, 1317
HpyCH4IV ACGT 5 cut(s) 128, 206, 252, 721, 1451
HpyCH4V TGCA 8 cut(s) 712, 778, 869, 1121, 1127, 1247, 1288, 1328
HpyF3I CTNAG 3 cut(s) 17, 480, 653
HpySE526I ACGT 5 cut(s) 128, 206, 252, 721, 1451
Hsp92I GRCGYC 3 cut(s) 128, 156, 252
Hsp92II CATG 2 cut(s) 584, 1292
HspAI GCGC 2 cut(s) 102, 192
Kpn2I TCCGGA 1 cut(s) 85
KroI GCCGGC 1 cut(s) 322
KroNI GCCGGC 1 cut(s) 324
KspI CCGCGG 1 cut(s) 372
Kzo9I GATC 6 cut(s) 7, 29, 351, 601, 994, 1253
LguI GCTCTTC 1 cut(s) 443
LmnI GCTCC 5 cut(s) 40, 98, 268, 750, 1144
Lsp1109I GCAGC 9 cut(s) 111, 322, 571, 574, 595, 853, 899, 1340, 1357
LweI GCATC 4 cut(s) 335, 622, 1063, 1340
MaeI CTAG 2 cut(s) 591, 1203
MaeII ACGT 5 cut(s) 128, 206, 252, 721, 1451
MaeIII GTNAC 5 cut(s) 199, 259, 493, 769, 916
MalI GATC 6 cut(s) 9, 31, 353, 603, 996, 1255
MboI GATC 6 cut(s) 7, 29, 351, 601, 994, 1253
MfeI CAATTG 1 cut(s) 1270
MflI RGATCY 2 cut(s) 7, 1253
MhlI GDGCHC 8 cut(s) 369, 465, 714, 734, 755, 1116, 1176, 1306
MlsI TGGCCA 1 cut(s) 1293
MluCI AATT 7 cut(s) 643, 688, 704, 812, 1000, 1242, 1270
MluNI TGGCCA 1 cut(s) 1293
MlyI GAGTC 2 cut(s) 128, 170
MmeI TCCRAC 1 cut(s) 18
Mox20I TGGCCA 1 cut(s) 1293
Mph1103I ATGCAT 1 cut(s) 1290
MroI TCCGGA 1 cut(s) 85
MroNI GCCGGC 1 cut(s) 322
MscI TGGCCA 1 cut(s) 1293
MseI TTAA 3 cut(s) 12, 615, 969
MslI CAYNNNNRTG 1 cut(s) 783
Msp20I TGGCCA 1 cut(s) 1293
MspA1I CMGCKG 2 cut(s) 371, 1370
MspI CCGG 7 cut(s) 75, 86, 96, 123, 278, 293, 323
MspR9I CCNGG 5 cut(s) 75, 124, 294, 466, 1295
MunI CAATTG 1 cut(s) 1270
MvaI CCWGG 2 cut(s) 466, 1295
MvnI CGCG 3 cut(s) 104, 192, 371
NaeI GCCGGC 1 cut(s) 324
NciI CCSGG 3 cut(s) 75, 124, 294
NdeII GATC 6 cut(s) 7, 29, 351, 601, 994, 1253
NgoMIV GCCGGC 1 cut(s) 322
NlaIII CATG 2 cut(s) 584, 1292
NlaIV GGNNCC 5 cut(s) 72, 94, 367, 463, 1113
NmuCI GTSAC 4 cut(s) 199, 259, 493, 916
NsiI ATGCAT 1 cut(s) 1290
OliI CACNNNNGTG 1 cut(s) 783
PaeR7I CTCGAG 1 cut(s) 742
PaqCI CACCTGC 1 cut(s) 430
PciSI GCTCTTC 1 cut(s) 443
PcsI WCGNNNNNNNCGW 3 cut(s) 54, 134, 150
PdiI GCCGGC 1 cut(s) 324
PfeI GAWTC 3 cut(s) 524, 1216, 1341
PflFI GACNNNGTC 1 cut(s) 251
PfoI TCCNGGA 1 cut(s) 122
Ple19I CGATCG 1 cut(s) 604
PleI GAGTC 2 cut(s) 127, 170
PpsI GAGTC 2 cut(s) 127, 170
PpuMI RGGWCCY 1 cut(s) 1262
Psp124BI GAGCTC 1 cut(s) 755
Psp5II RGGWCCY 1 cut(s) 1262
Psp6I CCWGG 2 cut(s) 464, 1293
PspGI CCWGG 2 cut(s) 464, 1293
PspN4I GGNNCC 5 cut(s) 72, 94, 367, 463, 1113
PspOMI GGGCCC 2 cut(s) 365, 461
PspPI GGNCC 6 cut(s) 365, 366, 461, 462, 1073, 1262
PspPPI RGGWCCY 1 cut(s) 1262
PstI CTGCAG 1 cut(s) 1330
PsuI RGATCY 2 cut(s) 7, 1253
PsyI GACNNNGTC 1 cut(s) 251
PvuI CGATCG 1 cut(s) 604
RsaI GTAC 3 cut(s) 317, 485, 937
RsaNI GTAC 3 cut(s) 316, 484, 936
RseI CAYNNNNRTG 1 cut(s) 783
SacI GAGCTC 1 cut(s) 755
SacII CCGCGG 1 cut(s) 372
SapI GCTCTTC 1 cut(s) 443
SaqAI TTAA 3 cut(s) 12, 615, 969
Sau3AI GATC 6 cut(s) 7, 29, 351, 601, 994, 1253
Sau96I GGNCC 6 cut(s) 365, 366, 461, 462, 1073, 1262
ScaI AGTACT 2 cut(s) 317, 937
SchI GAGTC 2 cut(s) 128, 170
ScrFI CCNGG 5 cut(s) 75, 124, 294, 466, 1295
SduI GDGCHC 8 cut(s) 369, 465, 714, 734, 755, 1116, 1176, 1306
SfaNI GCATC 4 cut(s) 335, 622, 1063, 1340
SfcI CTRYAG 2 cut(s) 502, 1326
Sfr274I CTCGAG 1 cut(s) 742
Sfr303I CCGCGG 1 cut(s) 372
SgrBI CCGCGG 1 cut(s) 372
SinI GGWCC 1 cut(s) 1262
SlaI CTCGAG 1 cut(s) 742
SmiMI CAYNNNNRTG 1 cut(s) 783
SmlI CTYRAG 4 cut(s) 224, 742, 754, 1257
SmoI CTYRAG 4 cut(s) 224, 742, 754, 1257
Sse9I AATT 7 cut(s) 643, 688, 704, 812, 1000, 1242, 1270
SspMI CTAG 2 cut(s) 591, 1203
SstI GAGCTC 1 cut(s) 755
StyD4I CCNGG 5 cut(s) 73, 122, 292, 464, 1293
StyI CCWWGG 2 cut(s) 696, 817
TaaI ACNGT 3 cut(s) 287, 854, 1317
TaiI ACGT 5 cut(s) 131, 209, 255, 724, 1454
TaqI TCGA 8 cut(s) 131, 216, 354, 604, 743, 802, 849, 1394
TasI AATT 7 cut(s) 643, 688, 704, 812, 1000, 1242, 1270
TatI WGTACW 3 cut(s) 315, 483, 935
TauI GCSGC 2 cut(s) 197, 1442
TfiI GAWTC 3 cut(s) 524, 1216, 1341
Tru1I TTAA 3 cut(s) 12, 615, 969
Tru9I TTAA 3 cut(s) 12, 615, 969
TscAI CASTG 7 cut(s) 580, 661, 739, 780, 859, 1306, 1320
TseFI GTSAC 4 cut(s) 199, 259, 493, 916
TseI GCWGC 9 cut(s) 99, 310, 584, 587, 608, 866, 887, 1328, 1370
Tsp45I GTSAC 4 cut(s) 199, 259, 493, 916
TspDTI ATGAA 5 cut(s) 689, 698, 957, 987, 1011
TspGWI ACGGA 2 cut(s) 130, 1353
TspRI CASTG 7 cut(s) 580, 661, 739, 780, 859, 1306, 1320
Tth111I GACNNNGTC 1 cut(s) 251
VneI GTGCAC 1 cut(s) 710
VpaK11BI GGWCC 1 cut(s) 1262
XagI CCTNNNNNAGG 1 cut(s) 1149
XapI RAATTY 3 cut(s) 688, 704, 1000
XhoI CTCGAG 1 cut(s) 742
XspI CTAG 2 cut(s) 591, 1203
ZraI GACGTC 2 cut(s) 129, 253
ZrmI AGTACT 2 cut(s) 317, 937
Zsp2I ATGCAT 1 cut(s) 1290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.