Rmu_sc0010693.1_g000014

Enhancer of mRNA-decapping protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010693.1
Physical Location & Seq
Forward (+)
62227 .. 62793
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010693.1_g000014.1.cds

Sequence Viewer

Length: 567 bp
atggattacatagcagaatttactgttgcagtgcttattttgagctttgctgggactagtatatcacctcatggtgaacaaatttattgtgtccaaacacaagccattcaacagtatgctttggacttatccaagtgcttacctccctcattggagaattcaggtttagaaaagttcttttgtttccaggcatccgatcttggaattgagatgggccgggattgctgtgcaatatcattagaatcttatattacagatgaagctcgggaaggtgatggtgccagcatgtcagaaccactagcccagcctcattctaaagaggaagaccacgatcgctctacaaaagatgtatctgggtcggctatcgccacaaccgcatcacaactacaaacaccaaatgcaaagtcgagaaaacagaaatggaaaaatatgcaagcatcaggtccatcttccccatcaccaggtgtcctcaactcaatagagccctctaatgaagcaggtgggagttcaagtcccccctctggagaagctgcatttcctcaaattatggccaggggcaggatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

188

Amino Acids

20.02

Weight (kDa)

4.76

Isoelectric Point (pI)

56.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 488
Acc36I ACCTGC 1 cut(s) 488
AccB1I GGYRCC 1 cut(s) 278
AciI CCGC 1 cut(s) 375
AcoI YGGCCR 1 cut(s) 549
AcsI RAATTY 3 cut(s) 17, 81, 157
AdeI CACNNNGTG 1 cut(s) 464
AfiI CCNNNNNNNGG 3 cut(s) 461, 521, 558
AgsI TTSAA 2 cut(s) 110, 510
AhlI ACTAGT 1 cut(s) 56
AjnI CCWGG 3 cut(s) 186, 460, 551
AluBI AGCT 3 cut(s) 45, 263, 530
AluI AGCT 3 cut(s) 45, 263, 530
Ama87I CYCGRG 1 cut(s) 264
AoxI GGCC 2 cut(s) 214, 549
ApeKI GCWGC 1 cut(s) 530
ApoI RAATTY 3 cut(s) 17, 81, 157
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
AspS9I GGNCC 2 cut(s) 214, 443
AsuC2I CCSGG 1 cut(s) 218
AsuHPI GGTGA 4 cut(s) 57, 86, 284, 450
AvaI CYCGRG 1 cut(s) 264
AvaII GGWCC 1 cut(s) 443
BalI TGGCCA 1 cut(s) 551
BanI GGYRCC 1 cut(s) 278
BanII GRGCYC 1 cut(s) 486
BbsI GAAGAC 1 cut(s) 330
BbvI GCAGC 1 cut(s) 517
BccI CCATC 4 cut(s) 205, 269, 454, 463
BciT130I CCWGG 3 cut(s) 188, 462, 553
BcnI CCSGG 1 cut(s) 218
BcuI ACTAGT 1 cut(s) 56
BfaI CTAG 2 cut(s) 57, 299
BfuAI ACCTGC 1 cut(s) 488
BisI GCNGC 1 cut(s) 531
BlsI GCNGC 1 cut(s) 532
Bme1390I CCNGG 4 cut(s) 188, 218, 462, 553
Bme18I GGWCC 1 cut(s) 443
BmeT110I CYCGRG 1 cut(s) 264
BmgT120I GGNCC 2 cut(s) 214, 443
BmiI GGNNCC 1 cut(s) 280
BmrFI CCNGG 4 cut(s) 188, 218, 462, 553
BmsI GCATC 3 cut(s) 200, 386, 446
BpiI GAAGAC 1 cut(s) 330
BpmI CTGGAG 1 cut(s) 543
BpuMI CCSGG 1 cut(s) 218
BsaJI CCNNGG 1 cut(s) 552
BsaXI ACNNNNNCTCC 2 cut(s) 496, 526
Bsc4I CCNNNNNNNGG 3 cut(s) 461, 521, 558
BseBI CCWGG 3 cut(s) 188, 462, 553
BseDI CCNNGG 1 cut(s) 552
BseGI GGATG 1 cut(s) 191
BseLI CCNNNNNNNGG 3 cut(s) 461, 521, 558
BseXI GCAGC 1 cut(s) 517
BseYI CCCAGC 2 cut(s) 50, 303
Bsh1285I CGRYCG 1 cut(s) 334
BshFI GGCC 2 cut(s) 216, 551
BshNI GGYRCC 1 cut(s) 278
BsiEI CGRYCG 1 cut(s) 334
BsiHKCI CYCGRG 1 cut(s) 264
BsiSI CCGG 1 cut(s) 217
BslFI GGGAC 2 cut(s) 67, 498
BslI CCNNNNNNNGG 3 cut(s) 461, 521, 558
BsmFI GGGAC 2 cut(s) 67, 498
BsnI GGCC 2 cut(s) 216, 551
BsoBI CYCGRG 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 486
Bsp143I GATC 2 cut(s) 196, 331
BspACI CCGC 1 cut(s) 375
BspANI GGCC 2 cut(s) 216, 551
BspLI GGNNCC 1 cut(s) 280
BspMI ACCTGC 1 cut(s) 488
BspT107I GGYRCC 1 cut(s) 278
BssECI CCNNGG 1 cut(s) 552
BssMI GATC 2 cut(s) 196, 331
Bst2UI CCWGG 3 cut(s) 188, 462, 553
Bst4CI ACNGT 2 cut(s) 25, 114
BstC8I GCNNGC 2 cut(s) 283, 435
BstF5I GGATG 1 cut(s) 191
BstKTI GATC 2 cut(s) 199, 334
BstMBI GATC 2 cut(s) 196, 331
BstMCI CGRYCG 1 cut(s) 334
BstMWI GCNNNNNNNGC 2 cut(s) 222, 374
BstNI CCWGG 3 cut(s) 188, 462, 553
BstNSI RCATGY 1 cut(s) 289
BstSCI CCNGG 4 cut(s) 186, 216, 460, 551
BstV1I GCAGC 1 cut(s) 517
BstV2I GAAGAC 1 cut(s) 330
BsuRI GGCC 2 cut(s) 216, 551
BtsCI GGATG 1 cut(s) 191
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 36
BveI ACCTGC 1 cut(s) 488
Cac8I GCNNGC 2 cut(s) 283, 435
Cfr13I GGNCC 2 cut(s) 214, 443
CsiI ACCWGGT 1 cut(s) 460
CviAII CATG 2 cut(s) 71, 286
DpnI GATC 2 cut(s) 198, 333
DpnII GATC 2 cut(s) 196, 331
DraIII CACNNNGTG 1 cut(s) 464
EaeI YGGCCR 1 cut(s) 549
Eco24I GRGCYC 1 cut(s) 486
Eco47I GGWCC 1 cut(s) 443
Eco88I CYCGRG 1 cut(s) 264
EcoRI GAATTC 1 cut(s) 157
EcoRII CCWGG 3 cut(s) 186, 460, 551
EcoT38I GRGCYC 1 cut(s) 486
FaeI CATG 2 cut(s) 74, 289
FaiI YATR 9 cut(s) 11, 62, 72, 117, 249, 287, 431, 548, 565
FaqI GGGAC 2 cut(s) 67, 498
FatI CATG 2 cut(s) 70, 285
Fnu4HI GCNGC 1 cut(s) 531
FokI GGATG 1 cut(s) 178
FriOI GRGCYC 1 cut(s) 486
Fsp4HI GCNGC 1 cut(s) 531
FspBI CTAG 2 cut(s) 57, 299
GluI GCNGC 1 cut(s) 531
GsaI CCCAGC 2 cut(s) 54, 307
GsuI CTGGAG 1 cut(s) 543
HaeIII GGCC 2 cut(s) 216, 551
HapII CCGG 1 cut(s) 217
Hin1II CATG 2 cut(s) 74, 289
HinfI GANTC 1 cut(s) 242
HpaII CCGG 1 cut(s) 217
HphI GGTGA 4 cut(s) 57, 86, 284, 450
Hpy166II GTNNAC 1 cut(s) 77
Hpy188I TCNGA 2 cut(s) 196, 292
Hpy188III TCNNGA 3 cut(s) 266, 408, 522
Hpy8I GTNNAC 1 cut(s) 77
HpyAV CCTTC 1 cut(s) 263
HpyCH4III ACNGT 2 cut(s) 25, 114
HpyCH4V TGCA 5 cut(s) 29, 230, 401, 433, 533
HpyF10VI GCNNNNNNNGC 2 cut(s) 222, 374
Hsp92II CATG 2 cut(s) 74, 289
Kzo9I GATC 2 cut(s) 196, 331
Lsp1109I GCAGC 1 cut(s) 517
LweI GCATC 3 cut(s) 200, 386, 446
MabI ACCWGGT 1 cut(s) 460
MaeI CTAG 2 cut(s) 57, 299
MalI GATC 2 cut(s) 198, 333
MboI GATC 2 cut(s) 196, 331
MboII GAAGA 2 cut(s) 335, 441
MhlI GDGCHC 1 cut(s) 486
MlsI TGGCCA 1 cut(s) 551
MluCI AATT 5 cut(s) 17, 81, 157, 204, 543
MluNI TGGCCA 1 cut(s) 551
MnlI CCTC 9 cut(s) 78, 153, 157, 313, 318, 479, 496, 529, 549
Mox20I TGGCCA 1 cut(s) 551
MscI TGGCCA 1 cut(s) 551
Msp20I TGGCCA 1 cut(s) 551
MspI CCGG 1 cut(s) 217
MspR9I CCNGG 4 cut(s) 188, 218, 462, 553
MvaI CCWGG 3 cut(s) 188, 462, 553
MwoI GCNNNNNNNGC 2 cut(s) 222, 374
NciI CCSGG 1 cut(s) 218
NdeII GATC 2 cut(s) 196, 331
NlaIII CATG 2 cut(s) 74, 289
NlaIV GGNNCC 1 cut(s) 280
NspI RCATGY 1 cut(s) 289
PaqCI CACCTGC 1 cut(s) 488
PfeI GAWTC 1 cut(s) 242
PkrI GCNGC 1 cut(s) 532
Ple19I CGATCG 1 cut(s) 334
Psp6I CCWGG 3 cut(s) 186, 460, 551
PspFI CCCAGC 2 cut(s) 50, 303
PspGI CCWGG 3 cut(s) 186, 460, 551
PspN4I GGNNCC 1 cut(s) 280
PspPI GGNCC 2 cut(s) 214, 443
PvuI CGATCG 1 cut(s) 334
SatI GCNGC 1 cut(s) 531
Sau3AI GATC 2 cut(s) 196, 331
Sau96I GGNCC 2 cut(s) 214, 443
ScrFI CCNGG 4 cut(s) 188, 218, 462, 553
SduI GDGCHC 1 cut(s) 486
SexAI ACCWGGT 1 cut(s) 460
SfaNI GCATC 3 cut(s) 200, 386, 446
SinI GGWCC 1 cut(s) 443
SpeI ACTAGT 1 cut(s) 56
Sse9I AATT 5 cut(s) 17, 81, 157, 204, 543
SsiI CCGC 1 cut(s) 375
SspMI CTAG 2 cut(s) 57, 299
StyD4I CCNGG 4 cut(s) 186, 216, 460, 551
TaaI ACNGT 2 cut(s) 25, 114
TaqI TCGA 1 cut(s) 407
TasI AATT 5 cut(s) 17, 81, 157, 204, 543
TfiI GAWTC 1 cut(s) 242
TscAI CASTG 1 cut(s) 36
TseI GCWGC 1 cut(s) 530
TspDTI ATGAA 2 cut(s) 273, 507
TspRI CASTG 1 cut(s) 36
VpaK11BI GGWCC 1 cut(s) 443
XapI RAATTY 3 cut(s) 17, 81, 157
XceI RCATGY 1 cut(s) 289
XspI CTAG 2 cut(s) 57, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.