Rmu_sc0006571.1_g000014

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006571.1
OG0000324
Physical Location & Seq
Reverse (-)
41131 .. 43012
1882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006571.1_g000014.1.cds

Sequence Viewer

Length: 726 bp
atgcaagcatcaggtccatcttccccctcaccaggggtgctcaactcaatagagccctccaatgaagcaggtggcaggtggtactgtggcagttcaagtccccactccggagaagctgcatttcctcaaattatagccaggcaggatatgatgaatcagctaatgactatgcaaaaagatttgcaaaagcagatgacaattatggttaccgtccctattacaaaggaaggcaaacgaatagaggcggctctcggttggagtatggagaaggctgtaaaggccaataatgttgctctgtgggctcagtttcaagaagagaatgcaaagaatgagaaattattgcgagaccgtgctaaacaagtaactggtttgatcaataactttgtgaacaaggactttccggatgctctcaagtcgagcatggaagcttcagtggtacctgcctttgagaagtcatgtaaagccatgtttgagcaagtagatgccacattccagaagggaatggttgaacatgcaattgtggctctgcagcattttgagtctacacattcgccgttagcccatgctttaagggaagctattagctctgcatcatcagtgactcaaaccctaagcggagaactggctgatggtcaacgtaagttagtagctcttgctgctgcacggggaaactcaagtgcagtaaatcctgattgttgtttcaccctgtataatgcattgttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

241

Amino Acids

26.1

Weight (kDa)

6.53

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 59, 66
Acc36I ACCTGC 3 cut(s) 59, 66, 448
Acc65I GGTACC 1 cut(s) 436
AccB1I GGYRCC 1 cut(s) 436
AccI GTMKAC 1 cut(s) 542
AccIII TCCGGA 2 cut(s) 107, 400
AciI CCGC 2 cut(s) 245, 615
AcuI CTGAAG 1 cut(s) 414
AfaI GTAC 2 cut(s) 83, 438
AfiI CCNNNNNNNGG 3 cut(s) 32, 33, 107
AgsI TTSAA 3 cut(s) 96, 311, 509
AjnI CCWGG 2 cut(s) 31, 137
AluBI AGCT 6 cut(s) 116, 160, 428, 578, 585, 650
AluI AGCT 6 cut(s) 116, 160, 428, 578, 585, 650
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 1 cut(s) 339
Aor13HI TCCGGA 2 cut(s) 107, 400
AoxI GGCC 1 cut(s) 279
ApeKI GCWGC 4 cut(s) 116, 529, 656, 659
Asp718I GGTACC 1 cut(s) 436
AspS9I GGNCC 1 cut(s) 14
AsuHPI GGTGA 2 cut(s) 21, 694
AvaII GGWCC 1 cut(s) 14
BanI GGYRCC 1 cut(s) 436
BanII GRGCYC 2 cut(s) 57, 304
Bbv12I GWGCWC 1 cut(s) 42
BbvI GCAGC 4 cut(s) 103, 541, 643, 646
BccI CCATC 2 cut(s) 25, 623
BceAI ACGGC 1 cut(s) 538
BciT130I CCWGG 2 cut(s) 33, 139
BclI TGATCA 1 cut(s) 372
BcoDI GTCTC 1 cut(s) 339
BfmI CTRYAG 1 cut(s) 527
BfuAI ACCTGC 3 cut(s) 59, 66, 448
BisI GCNGC 5 cut(s) 117, 246, 530, 657, 660
BlsI GCNGC 5 cut(s) 118, 247, 531, 658, 661
Bme1390I CCNGG 2 cut(s) 33, 139
Bme18I GGWCC 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 438
BmrFI CCNGG 2 cut(s) 33, 139
BmsI GCATC 4 cut(s) 17, 394, 472, 599
Bpu10I CCTNAGC 1 cut(s) 611
BpuEI CTTGAG 2 cut(s) 395, 658
BsaI GGTCTC 1 cut(s) 339
BsaJI CCNNGG 1 cut(s) 32
BsaWI WCCGGW 2 cut(s) 107, 400
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 33, 107
Bse1I ACTGG 2 cut(s) 370, 627
BseAI TCCGGA 2 cut(s) 107, 400
BseBI CCWGG 2 cut(s) 33, 139
BseDI CCNNGG 1 cut(s) 32
BseGI GGATG 1 cut(s) 409
BseLI CCNNNNNNNGG 3 cut(s) 32, 33, 107
BseMII CTCAG 1 cut(s) 317
BseNI ACTGG 2 cut(s) 370, 627
BseXI GCAGC 4 cut(s) 103, 541, 643, 646
BsgI GTGCAG 2 cut(s) 645, 699
BshFI GGCC 1 cut(s) 281
BshNI GGYRCC 1 cut(s) 436
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 2 cut(s) 108, 401
BslFI GGGAC 2 cut(s) 84, 197
BslI CCNNNNNNNGG 3 cut(s) 32, 33, 107
BsmAI GTCTC 1 cut(s) 339
BsmFI GGGAC 2 cut(s) 84, 197
BsmI GAATGC 1 cut(s) 325
BsnI GGCC 1 cut(s) 281
Bso31I GGTCTC 1 cut(s) 339
Bsp1286I GDGCHC 3 cut(s) 42, 57, 304
Bsp13I TCCGGA 2 cut(s) 107, 400
Bsp143I GATC 1 cut(s) 372
BspACI CCGC 2 cut(s) 245, 615
BspANI GGCC 1 cut(s) 281
BspCNI CTCAG 1 cut(s) 316
BspEI TCCGGA 2 cut(s) 107, 400
BspLI GGNNCC 1 cut(s) 438
BspMAI CTGCAG 1 cut(s) 531
BspMI ACCTGC 3 cut(s) 59, 66, 448
BspT107I GGYRCC 1 cut(s) 436
BspTNI GGTCTC 1 cut(s) 339
BsrI ACTGG 2 cut(s) 370, 627
BssECI CCNNGG 1 cut(s) 32
BssMI GATC 1 cut(s) 372
Bst2UI CCWGG 2 cut(s) 33, 139
Bst4CI ACNGT 3 cut(s) 86, 211, 350
Bst6I CTCTTC 1 cut(s) 309
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 303, 611
BstEII GGTNACC 1 cut(s) 205
BstF5I GGATG 1 cut(s) 409
BstKTI GATC 1 cut(s) 375
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 1 cut(s) 372
BstMWI GCNNNNNNNGC 4 cut(s) 278, 299, 521, 656
BstNI CCWGG 2 cut(s) 33, 139
BstNSI RCATGY 1 cut(s) 515
BstPI GGTNACC 1 cut(s) 205
BstSCI CCNGG 2 cut(s) 31, 137
BstSFI CTRYAG 1 cut(s) 527
BstV1I GCAGC 4 cut(s) 103, 541, 643, 646
BsuRI GGCC 1 cut(s) 281
BtsCI GGATG 1 cut(s) 409
BtsIMutI CAGTG 2 cut(s) 438, 603
BveI ACCTGC 3 cut(s) 59, 66, 448
Cac8I GCNNGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 14
Csp6I GTAC 2 cut(s) 82, 437
CviAII CATG 5 cut(s) 421, 456, 466, 512, 563
CviQI GTAC 2 cut(s) 82, 437
DdeI CTNAG 2 cut(s) 303, 611
DpnI GATC 1 cut(s) 374
DpnII GATC 1 cut(s) 372
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
Eco24I GRGCYC 2 cut(s) 57, 304
Eco31I GGTCTC 1 cut(s) 339
Eco47I GGWCC 1 cut(s) 14
Eco57I CTGAAG 1 cut(s) 414
Eco91I GGTNACC 1 cut(s) 205
EcoO65I GGTNACC 1 cut(s) 205
EcoRII CCWGG 2 cut(s) 31, 137
EcoT22I ATGCAT 1 cut(s) 718
EcoT38I GRGCYC 2 cut(s) 57, 304
FaeI CATG 5 cut(s) 424, 459, 469, 515, 566
FaqI GGGAC 2 cut(s) 84, 197
FatI CATG 5 cut(s) 420, 455, 465, 511, 562
FbaI TGATCA 1 cut(s) 372
FblI GTMKAC 1 cut(s) 542
Fnu4HI GCNGC 5 cut(s) 117, 246, 530, 657, 660
FokI GGATG 1 cut(s) 416
FriOI GRGCYC 2 cut(s) 57, 304
Fsp4HI GCNGC 5 cut(s) 117, 246, 530, 657, 660
GluI GCNGC 5 cut(s) 117, 246, 530, 657, 660
HaeIII GGCC 1 cut(s) 281
HapII CCGG 2 cut(s) 108, 401
Hin1II CATG 5 cut(s) 424, 459, 469, 515, 566
HincII GTYRAC 1 cut(s) 635
HindII GTYRAC 1 cut(s) 635
HindIII AAGCTT 1 cut(s) 426
HinfI GANTC 3 cut(s) 154, 539, 601
HpaII CCGG 2 cut(s) 108, 401
HphI GGTGA 2 cut(s) 21, 694
Hpy166II GTNNAC 3 cut(s) 388, 543, 635
Hpy188III TCNNGA 5 cut(s) 108, 311, 401, 493, 689
Hpy8I GTNNAC 3 cut(s) 388, 543, 635
HpyAV CCTTC 3 cut(s) 221, 262, 490
HpyCH4III ACNGT 3 cut(s) 86, 211, 350
HpyCH4IV ACGT 1 cut(s) 637
HpyF10VI GCNNNNNNNGC 4 cut(s) 278, 299, 521, 656
HpyF3I CTNAG 2 cut(s) 303, 611
HpySE526I ACGT 1 cut(s) 637
Hsp92II CATG 5 cut(s) 424, 459, 469, 515, 566
Kpn2I TCCGGA 2 cut(s) 107, 400
KpnI GGTACC 1 cut(s) 440
Ksp22I TGATCA 1 cut(s) 372
Kzo9I GATC 1 cut(s) 372
Lsp1109I GCAGC 4 cut(s) 103, 541, 643, 646
LweI GCATC 4 cut(s) 17, 394, 472, 599
MaeII ACGT 1 cut(s) 637
MaeIII GTNAC 3 cut(s) 205, 361, 598
MalI GATC 1 cut(s) 374
MboI GATC 1 cut(s) 372
MboII GAAGA 2 cut(s) 12, 326
MfeI CAATTG 1 cut(s) 516
MhlI GDGCHC 3 cut(s) 42, 57, 304
MluCI AATT 4 cut(s) 129, 198, 335, 516
MlyI GAGTC 2 cut(s) 548, 595
MmeI TCCRAC 1 cut(s) 236
MnlI CCTC 4 cut(s) 37, 67, 135, 235
Mph1103I ATGCAT 1 cut(s) 718
MroI TCCGGA 2 cut(s) 107, 400
MseI TTAA 1 cut(s) 569
MspI CCGG 2 cut(s) 108, 401
MspR9I CCNGG 2 cut(s) 33, 139
MunI CAATTG 1 cut(s) 516
Mva1269I GAATGC 1 cut(s) 325
MvaI CCWGG 2 cut(s) 33, 139
MwoI GCNNNNNNNGC 4 cut(s) 278, 299, 521, 656
NdeII GATC 1 cut(s) 372
NlaIII CATG 5 cut(s) 424, 459, 469, 515, 566
NlaIV GGNNCC 1 cut(s) 438
NmuCI GTSAC 1 cut(s) 598
NsiI ATGCAT 1 cut(s) 718
NspI RCATGY 1 cut(s) 515
PaqCI CACCTGC 2 cut(s) 59, 66
PctI GAATGC 1 cut(s) 325
PfeI GAWTC 1 cut(s) 154
PkrI GCNGC 5 cut(s) 118, 247, 531, 658, 661
PleI GAGTC 2 cut(s) 547, 595
PpsI GAGTC 2 cut(s) 547, 595
Psp6I CCWGG 2 cut(s) 31, 137
PspEI GGTNACC 1 cut(s) 205
PspGI CCWGG 2 cut(s) 31, 137
PspN4I GGNNCC 1 cut(s) 438
PspPI GGNCC 1 cut(s) 14
PstI CTGCAG 1 cut(s) 531
RsaI GTAC 2 cut(s) 83, 438
RsaNI GTAC 2 cut(s) 82, 437
SaqAI TTAA 1 cut(s) 569
SatI GCNGC 5 cut(s) 117, 246, 530, 657, 660
Sau3AI GATC 1 cut(s) 372
Sau96I GGNCC 1 cut(s) 14
SchI GAGTC 2 cut(s) 548, 595
ScrFI CCNGG 2 cut(s) 33, 139
SduI GDGCHC 3 cut(s) 42, 57, 304
SfaNI GCATC 4 cut(s) 17, 394, 472, 599
SfcI CTRYAG 1 cut(s) 527
SinI GGWCC 1 cut(s) 14
SmlI CTYRAG 2 cut(s) 410, 673
SmoI CTYRAG 2 cut(s) 410, 673
Sse9I AATT 4 cut(s) 129, 198, 335, 516
SsiI CCGC 2 cut(s) 245, 615
StyD4I CCNGG 2 cut(s) 31, 137
TaaI ACNGT 3 cut(s) 86, 211, 350
TaiI ACGT 1 cut(s) 640
TaqI TCGA 1 cut(s) 416
TasI AATT 4 cut(s) 129, 198, 335, 516
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 1 cut(s) 569
Tru9I TTAA 1 cut(s) 569
TscAI CASTG 2 cut(s) 438, 603
TseFI GTSAC 1 cut(s) 598
TseI GCWGC 4 cut(s) 116, 529, 656, 659
Tsp45I GTSAC 1 cut(s) 598
TspDTI ATGAA 2 cut(s) 78, 167
TspRI CASTG 2 cut(s) 438, 603
VpaK11BI GGWCC 1 cut(s) 14
XceI RCATGY 1 cut(s) 515
XmiI GTMKAC 1 cut(s) 542
Zsp2I ATGCAT 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.