FvH4_7g10420

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000324
Physical Location & Seq
Forward (+)
9857022 .. 9859332
2311 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g10420.t1

Sequence Viewer

Length: 912 bp
ATGGCGGCCGAAAAAGCGGCTAAAAATAAGAACCAAAAAAAGAAGCAGAGACAGAAGTTGAAAAAAGCTGAACAAGCTTCGAAAGATATTACCACGGAATCAATACCACCTGTTGCATTGGCCCCGGAGATTAATGACACCCATAGTGGTGACCAACAAGTTAATGAGTACGCGGCGGTTGACAGGCAGATGAATACTGCAAGTTTAACCTTGTCTGATATGCCTGCTGCAGTTGATGATAATTCAAGGAATGATGAGCAGAAAATTGTACTAGATGATGTATCTAGTGTGCTCAGTCCTCCTAGCATGTGCAAACATCAAACCCATCTAAAACCACCAAATGAAGCAGGTGGAAGTTCAAGTCCCCCCTCTGGAGAAGCTGCAGTTCCTCAAATCATGCTTGATATGATGGATCAGCTAATAGATATGCAAAGAGAATTGCAAAAGCAGATGACAATTATGGAGATGGCTGTAGAGCAAAAGTTAAATAATTTTCAAGAAGAATTGAAAGAGGAGATGACGAAGGCTGTAGAGGCCGAGATTGATGCTCTGTGCGATCAACTTGGAGAAGAGATTTCTAAACAACTAACTGGTTTGATCAATTACTTTGTAAGCAAGGACTTTCAAGTCATTATAGAGGAAATGGTGAAAAAAGAATCAGCTGATGTTGGACAAGCTGTTGTTCGTCTATTCACTCCGGCTATAGAGAAATGTCAGGCAACAATAGATTTGGCTATATCTGATTACTTTCAGAAAGGAGATGGCTATGAAGCATTTAATCAATTGGAGAAATCGGTCAACTCAAAACTTGAAGCTACTGTACCCGAGCAAATCAAGGCACGGTTTCAAACTTCGGGTGAACAAGCTCTTCGGATGCTAGTAGCTCCGCATCACCAGCAACTCAAACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

304

Amino Acids

33.67

Weight (kDa)

4.93

Isoelectric Point (pI)

41.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 338
AasI GACNNNNNNGTC 1 cut(s) 626
Acc36I ACCTGC 1 cut(s) 338
AccII CGCG 1 cut(s) 173
AciI CCGC 5 cut(s) 5, 17, 173, 176, 887
AclWI GGATC 1 cut(s) 420
AcoI YGGCCR 1 cut(s) 6
AfaI GTAC 3 cut(s) 170, 270, 822
AfiI CCNNNNNNNGG 1 cut(s) 371
AgsI TTSAA 8 cut(s) 61, 246, 360, 497, 508, 626, 812, 848
AluBI AGCT 9 cut(s) 68, 77, 380, 418, 662, 677, 815, 866, 884
AluI AGCT 9 cut(s) 68, 77, 380, 418, 662, 677, 815, 866, 884
Alw21I GWGCWC 1 cut(s) 294
Alw26I GTCTC 1 cut(s) 43
AlwI GGATC 1 cut(s) 420
Ama87I CYCGRG 1 cut(s) 824
AoxI GGCC 3 cut(s) 6, 120, 534
ApeKI GCWGC 2 cut(s) 227, 380
AseI ATTAAT 1 cut(s) 132
AspS9I GGNCC 1 cut(s) 121
AsuC2I CCSGG 1 cut(s) 125
AsuHPI GGTGA 4 cut(s) 161, 658, 869, 884
AsuII TTCGAA 1 cut(s) 80
AvaI CYCGRG 1 cut(s) 824
BarI GAAGNNNNNNTAC 2 cut(s) 804, 836
Bbv12I GWGCWC 1 cut(s) 294
BbvI GCAGC 2 cut(s) 214, 367
BccI CCATC 4 cut(s) 333, 403, 460, 755
BcgI CGANNNNNNTGC 2 cut(s) 527, 561
BclI TGATCA 1 cut(s) 597
BcnI CCSGG 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 43
BfaI CTAG 4 cut(s) 272, 285, 303, 878
BfmI CTRYAG 5 cut(s) 228, 381, 471, 528, 702
BfuAI ACCTGC 1 cut(s) 338
BisI GCNGC 5 cut(s) 6, 18, 174, 228, 381
BlsI GCNGC 5 cut(s) 7, 19, 175, 229, 382
Bme1390I CCNGG 1 cut(s) 125
BmeT110I CYCGRG 1 cut(s) 824
BmgT120I GGNCC 1 cut(s) 121
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 1 cut(s) 125
BmsI GCATC 3 cut(s) 535, 864, 898
BpmI CTGGAG 1 cut(s) 393
Bpu14I TTCGAA 1 cut(s) 80
BpuMI CCSGG 1 cut(s) 125
BsaJI CCNNGG 2 cut(s) 93, 123
Bsc4I CCNNNNNNNGG 1 cut(s) 371
Bse1I ACTGG 1 cut(s) 595
BseDI CCNNGG 2 cut(s) 93, 123
BseGI GGATG 1 cut(s) 879
BseLI CCNNNNNNNGG 1 cut(s) 371
BseMII CTCAG 1 cut(s) 307
BseNI ACTGG 1 cut(s) 595
BseRI GAGGAG 1 cut(s) 527
BseX3I CGGCCG 1 cut(s) 6
BseXI GCAGC 2 cut(s) 214, 367
Bsh1236I CGCG 1 cut(s) 173
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 3 cut(s) 8, 122, 536
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 294
BsiHKCI CYCGRG 1 cut(s) 824
BsiSI CCGG 2 cut(s) 125, 698
BslFI GGGAC 1 cut(s) 348
BslI CCNNNNNNNGG 1 cut(s) 371
BsmAI GTCTC 1 cut(s) 43
BsmFI GGGAC 1 cut(s) 348
BsnI GGCC 3 cut(s) 8, 122, 536
BsoBI CYCGRG 1 cut(s) 824
Bsp119I TTCGAA 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 294
Bsp143I GATC 3 cut(s) 412, 556, 597
BspACI CCGC 5 cut(s) 5, 17, 173, 176, 887
BspANI GGCC 3 cut(s) 8, 122, 536
BspCNI CTCAG 1 cut(s) 306
BspFNI CGCG 1 cut(s) 173
BspLI GGNNCC 1 cut(s) 123
BspMAI CTGCAG 2 cut(s) 232, 385
BspMI ACCTGC 1 cut(s) 338
BspPI GGATC 1 cut(s) 420
BspQI GCTCTTC 1 cut(s) 873
BspT104I TTCGAA 1 cut(s) 80
BsrI ACTGG 1 cut(s) 595
BssECI CCNNGG 2 cut(s) 93, 123
BssMI GATC 3 cut(s) 412, 556, 597
Bst4CI ACNGT 2 cut(s) 820, 843
Bst6I CTCTTC 2 cut(s) 564, 873
BstBI TTCGAA 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 225
BstDEI CTNAG 1 cut(s) 293
BstDSI CCRYGG 1 cut(s) 93
BstEII GGTNACC 1 cut(s) 149
BstF5I GGATG 1 cut(s) 879
BstFNI CGCG 1 cut(s) 173
BstKTI GATC 3 cut(s) 415, 559, 600
BstMAI GTCTC 1 cut(s) 43
BstMBI GATC 3 cut(s) 412, 556, 597
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 4 cut(s) 14, 74, 533, 895
BstNSI RCATGY 1 cut(s) 310
BstPI GGTNACC 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 123
BstSFI CTRYAG 5 cut(s) 228, 381, 471, 528, 702
BstUI CGCG 1 cut(s) 173
BstV1I GCAGC 2 cut(s) 214, 367
BstZI CGGCCG 1 cut(s) 6
BsuRI GGCC 3 cut(s) 8, 122, 536
BtgI CCRYGG 1 cut(s) 93
BtsCI GGATG 1 cut(s) 879
BveI ACCTGC 1 cut(s) 338
Cac8I GCNNGC 1 cut(s) 225
Cfr13I GGNCC 1 cut(s) 121
Csp6I GTAC 3 cut(s) 169, 269, 821
CviAII CATG 2 cut(s) 307, 397
CviQI GTAC 3 cut(s) 169, 269, 821
DdeI CTNAG 1 cut(s) 293
DpnI GATC 3 cut(s) 414, 558, 599
DpnII GATC 3 cut(s) 412, 556, 597
DrdI GACNNNNNNGTC 1 cut(s) 626
DseDI GACNNNNNNGTC 1 cut(s) 626
EaeI YGGCCR 1 cut(s) 6
EagI CGGCCG 1 cut(s) 6
Eam1104I CTCTTC 2 cut(s) 564, 873
EarI CTCTTC 2 cut(s) 564, 873
EclXI CGGCCG 1 cut(s) 6
Eco52I CGGCCG 1 cut(s) 6
Eco88I CYCGRG 1 cut(s) 824
Eco91I GGTNACC 1 cut(s) 149
EcoO65I GGTNACC 1 cut(s) 149
FaeI CATG 2 cut(s) 310, 400
FaqI GGGAC 1 cut(s) 348
FatI CATG 2 cut(s) 306, 396
FbaI TGATCA 1 cut(s) 597
Fnu4HI GCNGC 5 cut(s) 6, 18, 174, 228, 381
FokI GGATG 1 cut(s) 886
Fsp4HI GCNGC 5 cut(s) 6, 18, 174, 228, 381
FspBI CTAG 4 cut(s) 272, 285, 303, 878
GluI GCNGC 5 cut(s) 6, 18, 174, 228, 381
GsuI CTGGAG 1 cut(s) 393
HaeIII GGCC 3 cut(s) 8, 122, 536
HapII CCGG 2 cut(s) 125, 698
Hin1II CATG 2 cut(s) 310, 400
HincII GTYRAC 2 cut(s) 181, 799
HindII GTYRAC 2 cut(s) 181, 799
HindIII AAGCTT 1 cut(s) 75
HinfI GANTC 2 cut(s) 98, 656
HpaII CCGG 2 cut(s) 125, 698
HphI GGTGA 4 cut(s) 161, 658, 869, 884
Hpy166II GTNNAC 3 cut(s) 181, 799, 860
Hpy188I TCNGA 4 cut(s) 217, 742, 753, 873
Hpy188III TCNNGA 2 cut(s) 372, 497
Hpy8I GTNNAC 3 cut(s) 181, 799, 860
HpyAV CCTTC 1 cut(s) 517
HpyCH4III ACNGT 2 cut(s) 820, 843
HpyCH4V TGCA 7 cut(s) 116, 200, 230, 312, 383, 430, 442
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 74, 533, 895
HpyF3I CTNAG 1 cut(s) 293
Hsp92II CATG 2 cut(s) 310, 400
Ksp22I TGATCA 1 cut(s) 597
Kzo9I GATC 3 cut(s) 412, 556, 597
LguI GCTCTTC 1 cut(s) 873
LmnI GCTCC 1 cut(s) 889
Lsp1109I GCAGC 2 cut(s) 214, 367
LweI GCATC 3 cut(s) 535, 864, 898
MaeI CTAG 4 cut(s) 272, 285, 303, 878
MaeIII GTNAC 1 cut(s) 149
MalI GATC 3 cut(s) 414, 558, 599
MboI GATC 3 cut(s) 412, 556, 597
MboII GAAGA 3 cut(s) 512, 581, 860
MfeI CAATTG 1 cut(s) 782
MhlI GDGCHC 1 cut(s) 294
MluCI AATT 8 cut(s) 241, 264, 437, 456, 490, 503, 601, 782
MmeI TCCRAC 1 cut(s) 649
MnlI CCTC 6 cut(s) 309, 379, 399, 505, 526, 631
MseI TTAA 5 cut(s) 132, 162, 206, 485, 777
MslI CAYNNNNRTG 1 cut(s) 147
MspA1I CMGCKG 1 cut(s) 662
MspI CCGG 2 cut(s) 125, 698
MspR9I CCNGG 1 cut(s) 125
MunI CAATTG 1 cut(s) 782
MvnI CGCG 1 cut(s) 173
MwoI GCNNNNNNNGC 4 cut(s) 14, 74, 533, 895
NciI CCSGG 1 cut(s) 125
NdeII GATC 3 cut(s) 412, 556, 597
NlaIII CATG 2 cut(s) 310, 400
NlaIV GGNNCC 1 cut(s) 123
NmeAIII GCCGAG 1 cut(s) 562
NmuCI GTSAC 1 cut(s) 149
NspI RCATGY 1 cut(s) 310
NspV TTCGAA 1 cut(s) 80
PaqCI CACCTGC 1 cut(s) 338
PciSI GCTCTTC 1 cut(s) 873
PfeI GAWTC 2 cut(s) 98, 656
PkrI GCNGC 5 cut(s) 7, 19, 175, 229, 382
PshBI ATTAAT 1 cut(s) 132
PspEI GGTNACC 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 123
PspPI GGNCC 1 cut(s) 121
PstI CTGCAG 2 cut(s) 232, 385
PvuII CAGCTG 1 cut(s) 662
RsaI GTAC 3 cut(s) 170, 270, 822
RsaNI GTAC 3 cut(s) 169, 269, 821
RseI CAYNNNNRTG 1 cut(s) 147
SapI GCTCTTC 1 cut(s) 873
SaqAI TTAA 5 cut(s) 132, 162, 206, 485, 777
SatI GCNGC 5 cut(s) 6, 18, 174, 228, 381
Sau3AI GATC 3 cut(s) 412, 556, 597
Sau96I GGNCC 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 125
SduI GDGCHC 1 cut(s) 294
SfaNI GCATC 3 cut(s) 535, 864, 898
SfcI CTRYAG 5 cut(s) 228, 381, 471, 528, 702
SfuI TTCGAA 1 cut(s) 80
SmiMI CAYNNNNRTG 1 cut(s) 147
Sse9I AATT 8 cut(s) 241, 264, 437, 456, 490, 503, 601, 782
SsiI CCGC 5 cut(s) 5, 17, 173, 176, 887
SspMI CTAG 4 cut(s) 272, 285, 303, 878
StyD4I CCNGG 1 cut(s) 123
TaaI ACNGT 2 cut(s) 820, 843
TaqI TCGA 1 cut(s) 80
TaqII GACCGA 1 cut(s) 784
TasI AATT 8 cut(s) 241, 264, 437, 456, 490, 503, 601, 782
TatI WGTACW 1 cut(s) 268
TauI GCSGC 3 cut(s) 8, 20, 176
TfiI GAWTC 2 cut(s) 98, 656
Tru1I TTAA 5 cut(s) 132, 162, 206, 485, 777
Tru9I TTAA 5 cut(s) 132, 162, 206, 485, 777
TseFI GTSAC 1 cut(s) 149
TseI GCWGC 2 cut(s) 227, 380
Tsp45I GTSAC 1 cut(s) 149
TspDTI ATGAA 3 cut(s) 206, 357, 783
TspGWI ACGGA 1 cut(s) 110
VspI ATTAAT 1 cut(s) 132
XceI RCATGY 1 cut(s) 310
XspI CTAG 4 cut(s) 272, 285, 303, 878
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.