RchiOBHm_Chr4g0387211

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000324
Physical Location & Seq
Reverse (-)
2391369 .. 2392587
1219 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36053

Sequence Viewer

Length: 366 bp
ATGGGGAATATTCGGGTTTTGAATATACACACTGCATTGAGTTCATTGTTTCAAGCTCATACACAGAGGGTCACAGACATGGCTTTCTTTGCCAAGGATGTTCACCTTTTGGCTAGTATGAGTGTAGAAGGACGGCTTTTTGTATGCAAAATTTCTGAAGGTCTAGATGAAGAAGGTATGCCACAAATCACAGGAAAGATTGTTATGGCCATTCAAATAGTTGGTGAGGGGGAAGCTGTTCATCCACGAGTTTGGCGGCACTGTCATAAACAAGAGGTTTTGGTTGTTCGGGTTGGGAAACGTTTCTACAAATTGTTACTACTAAAGTTGCAATGGGTGAAGTCCCTTCTGCTCAGATCCTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

121

Amino Acids

13.81

Weight (kDa)

9.69

Isoelectric Point (pI)

42.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 256
AclI AACGTT 1 cut(s) 301
AclWI GGATC 1 cut(s) 351
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 1 cut(s) 150
AcuI CTGAAG 1 cut(s) 177
AgsI TTSAA 3 cut(s) 22, 53, 215
AluBI AGCT 2 cut(s) 56, 236
AluI AGCT 2 cut(s) 56, 236
AlwI GGATC 1 cut(s) 351
AoxI GGCC 1 cut(s) 207
ApoI RAATTY 1 cut(s) 150
Asp700I GAANNNNTTC 2 cut(s) 237, 302
AsuHPI GGTGA 3 cut(s) 95, 236, 349
BalI TGGCCA 1 cut(s) 209
BauI CACGAG 1 cut(s) 246
BceAI ACGGC 1 cut(s) 149
BfaI CTAG 2 cut(s) 114, 164
BisI GCNGC 1 cut(s) 257
BlsI GCNGC 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 93
Bse3DI GCAATG 1 cut(s) 338
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 2 cut(s) 103, 241
BseMI GCAATG 1 cut(s) 338
BshFI GGCC 1 cut(s) 209
BslFI GGGAC 1 cut(s) 328
BsmFI GGGAC 1 cut(s) 328
BsnI GGCC 1 cut(s) 209
Bsp143I GATC 1 cut(s) 356
BspACI CCGC 1 cut(s) 256
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 1 cut(s) 366
BspPI GGATC 1 cut(s) 351
BsrDI GCAATG 1 cut(s) 338
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 1 cut(s) 356
BssSI CACGAG 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 93
Bst2BI CACGAG 1 cut(s) 246
Bst4CI ACNGT 1 cut(s) 263
BstDEI CTNAG 1 cut(s) 353
BstF5I GGATG 2 cut(s) 103, 241
BstKTI GATC 1 cut(s) 359
BstMBI GATC 1 cut(s) 356
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstX2I RGATCY 1 cut(s) 356
BstXI CCANNNNNNTGG 1 cut(s) 252
BstYI RGATCY 1 cut(s) 356
BsuRI GGCC 1 cut(s) 209
BtsCI GGATG 2 cut(s) 103, 241
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 2 cut(s) 30, 259
CviAII CATG 1 cut(s) 79
CviJI RGCY 6 cut(s) 56, 83, 113, 136, 209, 236
CviKI_1 RGCY 6 cut(s) 56, 83, 113, 136, 209, 236
DdeI CTNAG 1 cut(s) 353
DpnI GATC 1 cut(s) 358
DpnII GATC 1 cut(s) 356
EaeI YGGCCR 1 cut(s) 207
Eco130I CCWWGG 1 cut(s) 93
Eco57I CTGAAG 1 cut(s) 177
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 1 cut(s) 82
FaiI YATR 8 cut(s) 26, 60, 80, 119, 145, 179, 206, 267
FalI AAGNNNNNCTT 2 cut(s) 120, 152
FaqI GGGAC 1 cut(s) 328
FatI CATG 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 257
FokI GGATG 2 cut(s) 110, 228
Fsp4HI GCNGC 1 cut(s) 257
FspBI CTAG 2 cut(s) 114, 164
GluI GCNGC 1 cut(s) 257
HaeIII GGCC 1 cut(s) 209
Hin1II CATG 1 cut(s) 82
HphI GGTGA 3 cut(s) 95, 236, 349
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 2 cut(s) 157, 356
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 1 cut(s) 103
HpyAV CCTTC 4 cut(s) 122, 152, 167, 356
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4IV ACGT 1 cut(s) 301
HpyCH4V TGCA 3 cut(s) 35, 147, 331
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 1 cut(s) 353
HpySE526I ACGT 1 cut(s) 301
Hsp92II CATG 1 cut(s) 82
Kzo9I GATC 1 cut(s) 356
LpnPI CCDG 1 cut(s) 177
MaeI CTAG 2 cut(s) 114, 164
MaeII ACGT 1 cut(s) 301
MaeIII GTNAC 2 cut(s) 70, 315
MalI GATC 1 cut(s) 358
MboI GATC 1 cut(s) 356
MboII GAAGA 1 cut(s) 182
MflI RGATCY 1 cut(s) 356
MlsI TGGCCA 1 cut(s) 209
MluCI AATT 2 cut(s) 150, 311
MluNI TGGCCA 1 cut(s) 209
MnlI CCTC 3 cut(s) 60, 220, 268
Mox20I TGGCCA 1 cut(s) 209
MroXI GAANNNNTTC 2 cut(s) 237, 302
MscI TGGCCA 1 cut(s) 209
MseI TTAA 1 cut(s) 364
MslI CAYNNNNRTG 1 cut(s) 77
Msp20I TGGCCA 1 cut(s) 209
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 1 cut(s) 356
NlaIII CATG 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 70
PdmI GAANNNNTTC 2 cut(s) 237, 302
PkrI GCNGC 1 cut(s) 258
Psp1406I AACGTT 1 cut(s) 301
PsuI RGATCY 1 cut(s) 356
RseI CAYNNNNRTG 1 cut(s) 77
SaqAI TTAA 1 cut(s) 364
SatI GCNGC 1 cut(s) 257
Sau3AI GATC 1 cut(s) 356
SetI ASST 7 cut(s) 58, 108, 163, 178, 238, 279, 304
SmiMI CAYNNNNRTG 1 cut(s) 77
Sse9I AATT 2 cut(s) 150, 311
SsiI CCGC 1 cut(s) 256
SspI AATATT 1 cut(s) 10
SspMI CTAG 2 cut(s) 114, 164
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 263
TaiI ACGT 1 cut(s) 304
TasI AATT 2 cut(s) 150, 311
TauI GCSGC 1 cut(s) 259
Tru1I TTAA 1 cut(s) 364
Tru9I TTAA 1 cut(s) 364
TscAI CASTG 2 cut(s) 37, 266
TseFI GTSAC 1 cut(s) 70
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 3 cut(s) 33, 183, 230
TspRI CASTG 2 cut(s) 37, 266
XapI RAATTY 1 cut(s) 150
XbaI TCTAGA 1 cut(s) 163
XmnI GAANNNNTTC 2 cut(s) 237, 302
XspI CTAG 2 cut(s) 114, 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.