Rmu_sc0000013.1_g000024

Enhancer of mRNA-decapping protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000013.1
Physical Location & Seq
Reverse (-)
97069 .. 98489
1421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000013.1_g000024.1.cds

Sequence Viewer

Length: 423 bp
atgatcattgtttgtacgttgatcttgaagtggttgattgatctatcttttgcttggatactcgcaggaggttttggttgttcgggttgggaagcgtttctacaaattgttactactaaagttgcaaagggtgaagtcccttctgctgaggatcctattaagtgtcctgttgaaaaacttattgatggggtccaatttgttggtaaacatgatggagaggttacagatttatcaatgtgccaatggatgaccactcggctggtttctgcttctatggatggaactataaagatctgggaagatcgcaagtcacaacaacttttagtactgagatgctatgatggctttcctgtttattcgtctacatttgtgacggctcccaacaggcctagatcacatcatgcttataacagtggtgagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

140

Amino Acids

15.6

Weight (kDa)

5.89

Isoelectric Point (pI)

33.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 408
AccI GTMKAC 1 cut(s) 362
AclWI GGATC 2 cut(s) 146, 159
AfaI GTAC 2 cut(s) 16, 327
AgsI TTSAA 2 cut(s) 28, 173
AlwI GGATC 2 cut(s) 146, 159
AoxI GGCC 1 cut(s) 386
Asp700I GAANNNNTTC 1 cut(s) 96
AspS9I GGNCC 1 cut(s) 190
AsuHPI GGTGA 1 cut(s) 143
AvaII GGWCC 1 cut(s) 190
BamHI GGATCC 1 cut(s) 151
BarI GAAGNNNNNNTAC 2 cut(s) 84, 116
BbvCI CCTCAGC 1 cut(s) 147
BccI CCATC 4 cut(s) 179, 206, 272, 335
BceAI ACGGC 1 cut(s) 390
BciVI GTATCC 1 cut(s) 51
BclI TGATCA 1 cut(s) 3
BfaI CTAG 1 cut(s) 390
BfuI GTATCC 1 cut(s) 51
BglII AGATCT 1 cut(s) 291
BmcAI AGTACT 1 cut(s) 327
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 3 cut(s) 153, 191, 378
BmsI GCATC 1 cut(s) 323
Bpu10I CCTNAGC 1 cut(s) 147
BseGI GGATG 2 cut(s) 252, 283
BseMII CTCAG 2 cut(s) 138, 320
BshFI GGCC 1 cut(s) 388
BslFI GGGAC 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 1 cut(s) 388
Bsp143I GATC 7 cut(s) 3, 21, 40, 151, 291, 301, 392
BspANI GGCC 1 cut(s) 388
BspCNI CTCAG 2 cut(s) 139, 321
BspLI GGNNCC 3 cut(s) 153, 191, 378
BspPI GGATC 2 cut(s) 146, 159
BssMI GATC 7 cut(s) 3, 21, 40, 151, 291, 301, 392
Bst4CI ACNGT 1 cut(s) 413
BstDEI CTNAG 2 cut(s) 147, 329
BstF5I GGATG 2 cut(s) 252, 283
BstKTI GATC 7 cut(s) 6, 24, 43, 154, 294, 304, 395
BstMBI GATC 7 cut(s) 3, 21, 40, 151, 291, 301, 392
BstMWI GCNNNNNNNGC 1 cut(s) 342
BstX2I RGATCY 2 cut(s) 151, 291
BstXI CCANNNNNNTGG 2 cut(s) 200, 259
BstYI RGATCY 2 cut(s) 151, 291
BsuI GTATCC 1 cut(s) 51
BsuRI GGCC 1 cut(s) 388
BtsCI GGATG 2 cut(s) 252, 283
BtsIMutI CAGTG 1 cut(s) 418
Cfr13I GGNCC 1 cut(s) 190
Csp6I GTAC 2 cut(s) 15, 326
CviAII CATG 2 cut(s) 209, 401
CviJI RGCY 4 cut(s) 259, 345, 377, 388
CviKI_1 RGCY 4 cut(s) 259, 345, 377, 388
CviQI GTAC 2 cut(s) 15, 326
DdeI CTNAG 2 cut(s) 147, 329
DpnI GATC 7 cut(s) 5, 23, 42, 153, 293, 303, 394
DpnII GATC 7 cut(s) 3, 21, 40, 151, 291, 301, 392
Eco147I AGGCCT 1 cut(s) 388
Eco47I GGWCC 1 cut(s) 190
FaeI CATG 2 cut(s) 212, 404
FaiI YATR 6 cut(s) 210, 275, 287, 339, 402, 408
FaqI GGGAC 1 cut(s) 122
FatI CATG 2 cut(s) 208, 400
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 362
FokI GGATG 2 cut(s) 259, 290
FspBI CTAG 1 cut(s) 390
HaeIII GGCC 1 cut(s) 388
Hin1II CATG 2 cut(s) 212, 404
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 2 cut(s) 206, 363
Hpy188III TCNNGA 1 cut(s) 25
Hpy8I GTNNAC 2 cut(s) 206, 363
HpyAV CCTTC 1 cut(s) 150
HpyCH4III ACNGT 1 cut(s) 413
HpyCH4IV ACGT 1 cut(s) 17
HpyCH4V TGCA 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 342
HpyF3I CTNAG 2 cut(s) 147, 329
HpySE526I ACGT 1 cut(s) 17
Hsp92II CATG 2 cut(s) 212, 404
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 7 cut(s) 3, 21, 40, 151, 291, 301, 392
LmnI GCTCC 1 cut(s) 382
LpnPI CCDG 6 cut(s) 51, 180, 245, 280, 363, 370
LweI GCATC 1 cut(s) 323
MaeI CTAG 1 cut(s) 390
MaeII ACGT 1 cut(s) 17
MaeIII GTNAC 4 cut(s) 109, 220, 309, 370
MalI GATC 7 cut(s) 5, 23, 42, 153, 293, 303, 394
MboI GATC 7 cut(s) 3, 21, 40, 151, 291, 301, 392
MboII GAAGA 1 cut(s) 311
MflI RGATCY 2 cut(s) 151, 291
MluCI AATT 2 cut(s) 105, 194
MnlI CCTC 3 cut(s) 62, 142, 211
MroXI GAANNNNTTC 1 cut(s) 96
MseI TTAA 1 cut(s) 159
MwoI GCNNNNNNNGC 1 cut(s) 342
NdeII GATC 7 cut(s) 3, 21, 40, 151, 291, 301, 392
NlaIII CATG 2 cut(s) 212, 404
NlaIV GGNNCC 3 cut(s) 153, 191, 378
NmeAIII GCCGAG 1 cut(s) 235
NmuCI GTSAC 2 cut(s) 309, 370
PceI AGGCCT 1 cut(s) 388
PdmI GAANNNNTTC 1 cut(s) 96
PsiI TTATAA 1 cut(s) 408
PspN4I GGNNCC 3 cut(s) 153, 191, 378
PspPI GGNCC 1 cut(s) 190
PsuI RGATCY 2 cut(s) 151, 291
RsaI GTAC 2 cut(s) 16, 327
RsaNI GTAC 2 cut(s) 15, 326
SaqAI TTAA 1 cut(s) 159
Sau3AI GATC 7 cut(s) 3, 21, 40, 151, 291, 301, 392
Sau96I GGNCC 1 cut(s) 190
ScaI AGTACT 1 cut(s) 327
SetI ASST 3 cut(s) 20, 73, 222
SfaNI GCATC 1 cut(s) 323
SinI GGWCC 1 cut(s) 190
Sse9I AATT 2 cut(s) 105, 194
SseBI AGGCCT 1 cut(s) 388
SspMI CTAG 1 cut(s) 390
StuI AGGCCT 1 cut(s) 388
TaaI ACNGT 1 cut(s) 413
TaiI ACGT 1 cut(s) 20
TasI AATT 2 cut(s) 105, 194
TatI WGTACW 1 cut(s) 325
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 1 cut(s) 418
TseFI GTSAC 2 cut(s) 309, 370
Tsp45I GTSAC 2 cut(s) 309, 370
TspRI CASTG 1 cut(s) 418
VpaK11BI GGWCC 1 cut(s) 190
XmiI GTMKAC 1 cut(s) 362
XmnI GAANNNNTTC 1 cut(s) 96
XspI CTAG 1 cut(s) 390
ZrmI AGTACT 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.