Rmu_sc0010272.1_g000021

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010272.1
OG0000324
Physical Location & Seq
Forward (+)
73461 .. 74404
944 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010272.1_g000021.1.cds

Sequence Viewer

Length: 306 bp
atggaagcttcagtggtacctgcctttgagaagtcatgtaaagccatgtttgagcaagtagatgccacattccagaagggaatggttgaacatgcaattgtggctctgcagcattttgagtctacacattcgccgttagcccatgctttaagggaagctattagctgcgcatcatcggtgactcaaaccctaagcggacaactggttgatggtcaattcagcattcagatcagaatggggcagtctatctggactgttactgcattagaatctgacaccttgttgctcccatgcattaccatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

101

Amino Acids

10.98

Weight (kDa)

5.12

Isoelectric Point (pI)

29.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 169
Acc36I ACCTGC 1 cut(s) 28
Acc65I GGTACC 1 cut(s) 16
AccB1I GGYRCC 1 cut(s) 16
AccI GTMKAC 1 cut(s) 122
AciI CCGC 1 cut(s) 195
AfaI GTAC 1 cut(s) 18
AgsI TTSAA 1 cut(s) 89
AluBI AGCT 3 cut(s) 8, 158, 165
AluI AGCT 3 cut(s) 8, 158, 165
ApeKI GCWGC 2 cut(s) 109, 165
Asp718I GGTACC 1 cut(s) 16
AspLEI GCGC 1 cut(s) 170
AsuHPI GGTGA 1 cut(s) 190
BanI GGYRCC 1 cut(s) 16
BbvI GCAGC 2 cut(s) 121, 152
BccI CCATC 1 cut(s) 203
BceAI ACGGC 1 cut(s) 118
BfmI CTRYAG 1 cut(s) 107
BfuAI ACCTGC 1 cut(s) 28
BisI GCNGC 2 cut(s) 110, 166
BlsI GCNGC 2 cut(s) 111, 167
BmiI GGNNCC 1 cut(s) 18
BmsI GCATC 2 cut(s) 52, 179
Bpu10I CCTNAGC 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 207
BseNI ACTGG 1 cut(s) 207
BseXI GCAGC 2 cut(s) 121, 152
BshNI GGYRCC 1 cut(s) 16
BsmI GAATGC 1 cut(s) 222
Bsp143I GATC 1 cut(s) 228
BspACI CCGC 1 cut(s) 195
BspLI GGNNCC 1 cut(s) 18
BspMAI CTGCAG 1 cut(s) 111
BspMI ACCTGC 1 cut(s) 28
BspT107I GGYRCC 1 cut(s) 16
BsrI ACTGG 1 cut(s) 207
BssMI GATC 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 256
BstDEI CTNAG 1 cut(s) 191
BstHHI GCGC 1 cut(s) 170
BstKTI GATC 1 cut(s) 231
BstMBI GATC 1 cut(s) 228
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNSI RCATGY 1 cut(s) 95
BstSFI CTRYAG 1 cut(s) 107
BstV1I GCAGC 2 cut(s) 121, 152
BtsIMutI CAGTG 1 cut(s) 18
BveI ACCTGC 1 cut(s) 28
CfoI GCGC 1 cut(s) 170
Csp6I GTAC 1 cut(s) 17
CviAII CATG 6 cut(s) 36, 46, 92, 143, 291, 301
CviJI RGCY 6 cut(s) 8, 44, 104, 140, 158, 165
CviKI_1 RGCY 6 cut(s) 8, 44, 104, 140, 158, 165
CviQI GTAC 1 cut(s) 17
DdeI CTNAG 1 cut(s) 191
DpnI GATC 1 cut(s) 230
DpnII GATC 1 cut(s) 228
EcoT22I ATGCAT 1 cut(s) 296
FaeI CATG 6 cut(s) 39, 49, 95, 146, 294, 304
FaiI YATR 6 cut(s) 37, 47, 93, 144, 292, 302
FatI CATG 6 cut(s) 35, 45, 91, 142, 290, 300
FblI GTMKAC 1 cut(s) 122
Fnu4HI GCNGC 2 cut(s) 110, 166
Fsp4HI GCNGC 2 cut(s) 110, 166
FspI TGCGCA 1 cut(s) 169
GlaI GCGC 1 cut(s) 169
GluI GCNGC 2 cut(s) 110, 166
HhaI GCGC 1 cut(s) 170
Hin1II CATG 6 cut(s) 39, 49, 95, 146, 294, 304
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HindIII AAGCTT 1 cut(s) 6
HinfI GANTC 3 cut(s) 119, 181, 269
HphI GGTGA 1 cut(s) 190
Hpy166II GTNNAC 1 cut(s) 123
Hpy188I TCNGA 3 cut(s) 228, 233, 274
Hpy188III TCNNGA 2 cut(s) 73, 250
Hpy8I GTNNAC 1 cut(s) 123
HpyAV CCTTC 1 cut(s) 70
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4V TGCA 4 cut(s) 95, 109, 263, 294
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 1 cut(s) 191
Hsp92II CATG 6 cut(s) 39, 49, 95, 146, 294, 304
HspAI GCGC 1 cut(s) 168
KpnI GGTACC 1 cut(s) 20
Kzo9I GATC 1 cut(s) 228
LmnI GCTCC 1 cut(s) 291
LpnPI CCDG 4 cut(s) 33, 86, 188, 235
Lsp1109I GCAGC 2 cut(s) 121, 152
LweI GCATC 2 cut(s) 52, 179
MaeIII GTNAC 2 cut(s) 178, 256
MalI GATC 1 cut(s) 230
MboI GATC 1 cut(s) 228
MfeI CAATTG 1 cut(s) 96
MluCI AATT 2 cut(s) 96, 215
MlyI GAGTC 2 cut(s) 128, 175
Mph1103I ATGCAT 1 cut(s) 296
MseI TTAA 1 cut(s) 149
MslI CAYNNNNRTG 1 cut(s) 299
MunI CAATTG 1 cut(s) 96
Mva1269I GAATGC 1 cut(s) 222
MwoI GCNNNNNNNGC 1 cut(s) 101
NdeII GATC 1 cut(s) 228
NlaIII CATG 6 cut(s) 39, 49, 95, 146, 294, 304
NlaIV GGNNCC 1 cut(s) 18
NmuCI GTSAC 1 cut(s) 178
NsbI TGCGCA 1 cut(s) 169
NsiI ATGCAT 1 cut(s) 296
NspI RCATGY 1 cut(s) 95
PctI GAATGC 1 cut(s) 222
PfeI GAWTC 1 cut(s) 269
PkrI GCNGC 2 cut(s) 111, 167
PleI GAGTC 2 cut(s) 127, 175
PpsI GAGTC 2 cut(s) 127, 175
PspN4I GGNNCC 1 cut(s) 18
PstI CTGCAG 1 cut(s) 111
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 299
SaqAI TTAA 1 cut(s) 149
SatI GCNGC 2 cut(s) 110, 166
Sau3AI GATC 1 cut(s) 228
SchI GAGTC 2 cut(s) 128, 175
SetI ASST 5 cut(s) 10, 22, 160, 167, 281
SfaNI GCATC 2 cut(s) 52, 179
SfcI CTRYAG 1 cut(s) 107
SmiMI CAYNNNNRTG 1 cut(s) 299
Sse9I AATT 2 cut(s) 96, 215
SsiI CCGC 1 cut(s) 195
TaaI ACNGT 1 cut(s) 256
TasI AATT 2 cut(s) 96, 215
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 2 cut(s) 109, 165
Tsp45I GTSAC 1 cut(s) 178
TspRI CASTG 1 cut(s) 18
XceI RCATGY 1 cut(s) 95
XmiI GTMKAC 1 cut(s) 122
Zsp2I ATGCAT 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.