Rroxscaffold_5G00334050

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000324
Physical Location & Seq
Reverse (-)
1378479 .. 1381571
3093 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00334050.1

Sequence Viewer

Length: 261 bp
ATGTTTGAGCAAGTAGATGCCACATTCCAGAAAGGAATGGTTGAACATGCAACTGTGGCTCAGCAGCATTATGAGTCTGCACTTTCGCCTTTGGCCCATGCTTTAAGGGAAGCTATTAGCTCTGCATCATCAGTGACTCAAACCCTAAGCGGAGAACTGGCTGATGGTCAACGATTGTATTATGTAGTTGGTGTACTTGCAAGAAGTGAAGAATATGCTAAAAGTTCTAGTCTGACTTGGCTAAATTCCGCTTCAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

86

Amino Acids

9.36

Weight (kDa)

5.46

Isoelectric Point (pI)

45.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 150, 249
AcsI RAATTY 1 cut(s) 244
AfaI GTAC 1 cut(s) 195
AfiI CCNNNNNNNGG 1 cut(s) 255
AgsI TTSAA 2 cut(s) 44, 255
AluBI AGCT 2 cut(s) 113, 120
AluI AGCT 2 cut(s) 113, 120
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 64
ApoI RAATTY 1 cut(s) 244
AspS9I GGNCC 1 cut(s) 94
BbvI GCAGC 1 cut(s) 76
BccI CCATC 1 cut(s) 158
BfaI CTAG 1 cut(s) 228
BisI GCNGC 1 cut(s) 65
BlpI GCTNAGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 66
BmgT120I GGNCC 1 cut(s) 94
BmsI GCATC 2 cut(s) 7, 134
Bpu10I CCTNAGC 1 cut(s) 146
Bpu1102I GCTNAGC 1 cut(s) 60
Bsc4I CCNNNNNNNGG 1 cut(s) 255
Bse1I ACTGG 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 255
BseMII CTCAG 1 cut(s) 74
BseNI ACTGG 1 cut(s) 162
BseXI GCAGC 1 cut(s) 76
BsgI GTGCAG 1 cut(s) 63
BshFI GGCC 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 255
BsnI GGCC 1 cut(s) 95
Bsp1720I GCTNAGC 1 cut(s) 60
BspACI CCGC 2 cut(s) 150, 249
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 1 cut(s) 73
BsrI ACTGG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 55
BstDEI CTNAG 2 cut(s) 60, 146
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNSI RCATGY 1 cut(s) 50
BstV1I GCAGC 1 cut(s) 76
BsuRI GGCC 1 cut(s) 95
BtsIMutI CAGTG 1 cut(s) 138
Cfr13I GGNCC 1 cut(s) 94
Csp6I GTAC 1 cut(s) 194
CviAII CATG 2 cut(s) 47, 98
CviJI RGCY 6 cut(s) 59, 95, 113, 120, 161, 241
CviKI_1 RGCY 6 cut(s) 59, 95, 113, 120, 161, 241
CviQI GTAC 1 cut(s) 194
DdeI CTNAG 2 cut(s) 60, 146
FaeI CATG 2 cut(s) 50, 101
FaiI YATR 5 cut(s) 48, 72, 99, 183, 216
FatI CATG 2 cut(s) 46, 97
Fnu4HI GCNGC 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 65
FspBI CTAG 1 cut(s) 228
GluI GCNGC 1 cut(s) 65
HaeIII GGCC 1 cut(s) 95
Hin1II CATG 2 cut(s) 50, 101
HincII GTYRAC 1 cut(s) 170
HindII GTYRAC 1 cut(s) 170
HinfI GANTC 2 cut(s) 74, 136
Hpy166II GTNNAC 2 cut(s) 170, 194
Hpy188I TCNGA 1 cut(s) 234
Hpy188III TCNNGA 1 cut(s) 28
Hpy8I GTNNAC 2 cut(s) 170, 194
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4V TGCA 4 cut(s) 50, 80, 125, 200
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 2 cut(s) 60, 146
Hsp92II CATG 2 cut(s) 50, 101
LpnPI CCDG 2 cut(s) 41, 143
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 2 cut(s) 7, 134
MaeI CTAG 1 cut(s) 228
MaeIII GTNAC 1 cut(s) 133
MboII GAAGA 1 cut(s) 221
MluCI AATT 1 cut(s) 244
MlyI GAGTC 2 cut(s) 83, 130
MseI TTAA 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 56
NlaIII CATG 2 cut(s) 50, 101
NmuCI GTSAC 1 cut(s) 133
NspI RCATGY 1 cut(s) 50
PkrI GCNGC 1 cut(s) 66
PleI GAGTC 2 cut(s) 82, 130
PpsI GAGTC 2 cut(s) 82, 130
PspPI GGNCC 1 cut(s) 94
RsaI GTAC 1 cut(s) 195
RsaNI GTAC 1 cut(s) 194
SaqAI TTAA 1 cut(s) 104
SatI GCNGC 1 cut(s) 65
Sau96I GGNCC 1 cut(s) 94
SchI GAGTC 2 cut(s) 83, 130
SetI ASST 3 cut(s) 115, 122, 260
SfaNI GCATC 2 cut(s) 7, 134
SgeI CNNG 9 cut(s) 23, 40, 59, 110, 170, 209, 213, 240, 249
Sse9I AATT 1 cut(s) 244
SsiI CCGC 2 cut(s) 150, 249
SspMI CTAG 1 cut(s) 228
TaaI ACNGT 1 cut(s) 55
TasI AATT 1 cut(s) 244
TatI WGTACW 1 cut(s) 193
Tru1I TTAA 1 cut(s) 104
Tru9I TTAA 1 cut(s) 104
TscAI CASTG 1 cut(s) 138
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 133
TspRI CASTG 1 cut(s) 138
XapI RAATTY 1 cut(s) 244
XceI RCATGY 1 cut(s) 50
XspI CTAG 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.