Rmu_sc0008380.1_g000010

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008380.1
OG0000324
Physical Location & Seq
Forward (+)
68447 .. 69951
1505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008380.1_g000010.1.cds

Sequence Viewer

Length: 531 bp
atggttgtgggaggcctaatcttggcatctttcatgacatatgcgtcgaagcaccttgcaagtagatcattcttgagagttcttgaagaccgagatgctactagaagtttagaaaagtcagattccagtgtttcacatgatgcaactgaggcggtgtcaactaatagagcaccgaaaccaaccatacaaactactagttctgagggtgcaattgccttgaggtatcttgtgcgcaccggtttggttggtgctgccaattcaaaagatattaccacttcgtctatggaatcaaaacctgttgcattggcaccagagactagtgatgctgatgctgtttttttagcaccacaacctcttcctttgagtcctaggttgtcagggaaactttttggtttaagaagcctgacagatagcagtgaccatggtcgtgaccaacacgttaatgagtatgcagttgacaggcagatgaatactgctagttcaagtctgatatgcctgcactcgatgatgattcaaggaatgatgagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

176

Amino Acids

18.84

Weight (kDa)

6.51

Isoelectric Point (pI)

45.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 43
Acc16I TGCGCA 1 cut(s) 233
AccB1I GGYRCC 1 cut(s) 307
AciI CCGC 1 cut(s) 152
AfiI CCNNNNNNNGG 1 cut(s) 22
AflIII ACRYGT 1 cut(s) 436
AgeI ACCGGT 1 cut(s) 236
AgsI TTSAA 4 cut(s) 86, 261, 483, 515
AhlI ACTAGT 2 cut(s) 194, 317
AluBI AGCT 1 cut(s) 528
AluI AGCT 1 cut(s) 528
Alw21I GWGCWC 1 cut(s) 172
Alw26I GTCTC 1 cut(s) 308
AoxI GGCC 1 cut(s) 13
ApeKI GCWGC 1 cut(s) 251
AsiGI ACCGGT 1 cut(s) 236
AspA2I CCTAGG 1 cut(s) 368
AspLEI GCGC 1 cut(s) 234
AvrII CCTAGG 1 cut(s) 368
BanI GGYRCC 1 cut(s) 307
BbsI GAAGAC 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 172
BbvI GCAGC 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 308
BcuI ACTAGT 2 cut(s) 194, 317
BfaI CTAG 5 cut(s) 102, 195, 318, 369, 477
BisI GCNGC 1 cut(s) 252
BlnI CCTAGG 1 cut(s) 368
BlsI GCNGC 1 cut(s) 253
BmiI GGNNCC 1 cut(s) 309
BmsI GCATC 5 cut(s) 35, 85, 130, 313, 319
BoxI GACNNNNGTC 1 cut(s) 423
BpiI GAAGAC 1 cut(s) 93
BpuEI CTTGAG 2 cut(s) 94, 238
BsaJI CCNNGG 2 cut(s) 368, 421
BsaWI WCCGGW 1 cut(s) 236
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse118I RCCGGY 1 cut(s) 236
Bse1I ACTGG 1 cut(s) 126
BseDI CCNNGG 2 cut(s) 368, 421
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMII CTCAG 2 cut(s) 138, 192
BseNI ACTGG 1 cut(s) 126
BseXI GCAGC 1 cut(s) 238
BsgI GTGCAG 1 cut(s) 482
BshFI GGCC 1 cut(s) 15
BshNI GGYRCC 1 cut(s) 307
BshTI ACCGGT 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 172
BsiSI CCGG 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 22
BsmAI GTCTC 1 cut(s) 308
BsnI GGCC 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 1 cut(s) 65
Bsp19I CCATGG 1 cut(s) 421
BspACI CCGC 1 cut(s) 152
BspANI GGCC 1 cut(s) 15
BspCNI CTCAG 2 cut(s) 139, 193
BspHI TCATGA 1 cut(s) 33
BspLI GGNNCC 1 cut(s) 309
BspT107I GGYRCC 1 cut(s) 307
BsrFI RCCGGY 1 cut(s) 236
BsrI ACTGG 1 cut(s) 126
BssAI RCCGGY 1 cut(s) 236
BssECI CCNNGG 2 cut(s) 368, 421
BssMI GATC 1 cut(s) 65
BssT1I CCWWGG 2 cut(s) 368, 421
Bst6I CTCTTC 1 cut(s) 360
BstC8I GCNNGC 1 cut(s) 497
BstDEI CTNAG 2 cut(s) 147, 201
BstDSI CCRYGG 1 cut(s) 421
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 1 cut(s) 68
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 1 cut(s) 65
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstPAI GACNNNNGTC 1 cut(s) 423
BstV1I GCAGC 1 cut(s) 238
BstV2I GAAGAC 1 cut(s) 93
BsuRI GGCC 1 cut(s) 15
BtgI CCRYGG 1 cut(s) 421
BtsI GCAGTG 1 cut(s) 421
BtsIMutI CAGTG 2 cut(s) 133, 421
Cac8I GCNNGC 1 cut(s) 497
CciI TCATGA 1 cut(s) 33
CfoI GCGC 1 cut(s) 234
Cfr10I RCCGGY 1 cut(s) 236
CseI GACGC 1 cut(s) 33
CspAI ACCGGT 1 cut(s) 236
CviAII CATG 3 cut(s) 34, 137, 422
CviJI RGCY 3 cut(s) 15, 402, 528
CviKI_1 RGCY 3 cut(s) 15, 402, 528
DdeI CTNAG 2 cut(s) 147, 201
DpnI GATC 1 cut(s) 67
DpnII GATC 1 cut(s) 65
DrdI GACNNNNNNGTC 1 cut(s) 43
DseDI GACNNNNNNGTC 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 360
EarI CTCTTC 1 cut(s) 360
Eco130I CCWWGG 2 cut(s) 368, 421
Eco147I AGGCCT 1 cut(s) 15
EcoT14I CCWWGG 2 cut(s) 368, 421
ErhI CCWWGG 2 cut(s) 368, 421
FaeI CATG 3 cut(s) 37, 140, 425
FaiI YATR 9 cut(s) 35, 40, 42, 138, 185, 284, 423, 450, 493
FatI CATG 3 cut(s) 33, 136, 421
FauNDI CATATG 1 cut(s) 40
Fnu4HI GCNGC 1 cut(s) 252
Fsp4HI GCNGC 1 cut(s) 252
FspAI RTGCGCAY 1 cut(s) 233
FspBI CTAG 5 cut(s) 102, 195, 318, 369, 477
FspI TGCGCA 1 cut(s) 233
GlaI GCGC 1 cut(s) 233
GluI GCNGC 1 cut(s) 252
HaeIII GGCC 1 cut(s) 15
HapII CCGG 1 cut(s) 237
HgaI GACGC 1 cut(s) 33
HhaI GCGC 1 cut(s) 234
Hin1II CATG 3 cut(s) 37, 140, 425
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HincII GTYRAC 2 cut(s) 159, 457
HindII GTYRAC 2 cut(s) 159, 457
HinfI GANTC 4 cut(s) 122, 287, 364, 511
HpaII CCGG 1 cut(s) 237
Hpy166II GTNNAC 2 cut(s) 159, 457
Hpy188I TCNGA 3 cut(s) 121, 202, 489
Hpy188III TCNNGA 4 cut(s) 34, 73, 83, 428
Hpy8I GTNNAC 2 cut(s) 159, 457
Hpy99I CGWCG 1 cut(s) 49
HpyCH4IV ACGT 1 cut(s) 438
HpyCH4V TGCA 6 cut(s) 59, 143, 209, 302, 452, 499
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 2 cut(s) 147, 201
HpySE526I ACGT 1 cut(s) 438
Hsp92II CATG 3 cut(s) 37, 140, 425
HspAI GCGC 1 cut(s) 232
Kzo9I GATC 1 cut(s) 65
LpnPI CCDG 8 cut(s) 139, 250, 309, 324, 363, 416, 445, 509
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 5 cut(s) 35, 85, 130, 313, 319
MaeI CTAG 5 cut(s) 102, 195, 318, 369, 477
MaeII ACGT 1 cut(s) 438
MaeIII GTNAC 2 cut(s) 416, 428
MalI GATC 1 cut(s) 67
MboI GATC 1 cut(s) 65
MboII GAAGA 2 cut(s) 98, 347
MfeI CAATTG 1 cut(s) 210
MhlI GDGCHC 1 cut(s) 172
MluCI AATT 2 cut(s) 210, 256
MlyI GAGTC 1 cut(s) 373
MnlI CCTC 5 cut(s) 5, 142, 196, 213, 363
MseI TTAA 2 cut(s) 395, 441
MslI CAYNNNNRTG 2 cut(s) 426, 441
MspI CCGG 1 cut(s) 237
MunI CAATTG 1 cut(s) 210
MwoI GCNNNNNNNGC 1 cut(s) 149
NcoI CCATGG 1 cut(s) 421
NdeI CATATG 1 cut(s) 40
NdeII GATC 1 cut(s) 65
NlaIII CATG 3 cut(s) 37, 140, 425
NlaIV GGNNCC 1 cut(s) 309
NmuCI GTSAC 2 cut(s) 416, 428
NsbI TGCGCA 1 cut(s) 233
PagI TCATGA 1 cut(s) 33
PceI AGGCCT 1 cut(s) 15
PfeI GAWTC 3 cut(s) 122, 287, 511
PinAI ACCGGT 1 cut(s) 236
PkrI GCNGC 1 cut(s) 253
PleI GAGTC 1 cut(s) 372
PpsI GAGTC 1 cut(s) 372
PshAI GACNNNNGTC 1 cut(s) 423
PspN4I GGNNCC 1 cut(s) 309
RseI CAYNNNNRTG 2 cut(s) 426, 441
SaqAI TTAA 2 cut(s) 395, 441
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 1 cut(s) 65
SchI GAGTC 1 cut(s) 373
SduI GDGCHC 1 cut(s) 172
SetI ASST 7 cut(s) 57, 224, 298, 355, 374, 441, 530
SfaNI GCATC 5 cut(s) 35, 85, 130, 313, 319
SmiMI CAYNNNNRTG 2 cut(s) 426, 441
SmlI CTYRAG 2 cut(s) 73, 217
SmoI CTYRAG 2 cut(s) 73, 217
SpeI ACTAGT 2 cut(s) 194, 317
Sse9I AATT 2 cut(s) 210, 256
SseBI AGGCCT 1 cut(s) 15
SsiI CCGC 1 cut(s) 152
SspMI CTAG 5 cut(s) 102, 195, 318, 369, 477
StuI AGGCCT 1 cut(s) 15
StyI CCWWGG 2 cut(s) 368, 421
TaiI ACGT 1 cut(s) 441
TaqI TCGA 2 cut(s) 47, 503
TaqII GACCGA 1 cut(s) 105
TasI AATT 2 cut(s) 210, 256
TfiI GAWTC 3 cut(s) 122, 287, 511
Tru1I TTAA 2 cut(s) 395, 441
Tru9I TTAA 2 cut(s) 395, 441
TscAI CASTG 2 cut(s) 133, 421
TseFI GTSAC 2 cut(s) 416, 428
TseI GCWGC 1 cut(s) 251
Tsp45I GTSAC 2 cut(s) 416, 428
TspDTI ATGAA 2 cut(s) 22, 482
TspRI CASTG 2 cut(s) 133, 421
XcmI CCANNNNNNNNNTGG 1 cut(s) 280
XmaJI CCTAGG 1 cut(s) 368
XspI CTAG 5 cut(s) 102, 195, 318, 369, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.