Rh5DG528200

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000324
Physical Location & Seq
Reverse (-)
81537137 .. 81540571
3435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG528200.1

Sequence Viewer

Length: 894 bp
ATGGAATCAAAACCTGTTGCATCGGCACCGGAGATTAGTGATGCTGATGCTGTTTTTGTAGCATCACAACCTCTTCCTTTGAGTCCTAGGTTGTCAGGGAAACTTTCTGGTTTAAGAAGCCCGACAGATAGCAGTGATCATGGTGGTGACCAACAAGTTAATGAGTACTCAGTTGACAGGCAGATGAATACTGCTCGTTCAAACTTGTCTGATATGCCTGCACTCGATGATGATGCAAGGAATGATGAGCAGAAAATTGCACAGGACGAAGTATCTAGTGTGCTCAATCCTTCTATTTTGTTCAAACATCCAACCCATTTAATAACTCCCTCTGAGATTTTAATGGCTGCTTCATCCTCTGAGAATACAAATCCAATTGACAGCAACACTGAGGGGGATGCAAAAATCCAAGATGTTCTTGTTAACAGTGATGTGGGTAATCCTGAGGTGGAAGTTAAGGTTGAGGTGCCTTTGGATCCAACAAAGGAGCTGTCAAGGTTGGTAACTGAACGCAAGTATGAGGAGGCTTTCACAGGTGCTCTACAAAGAAGTGATGTTGGCATTGTATCATGGTTATGTGCTCAGGTTGATCTTCATGGGATACTGTTGCTGCAACCTGTTCCTCTGAGCCAAGGAGTACTTCTTTCGCTCCTGCAACAGCTGGCCTGTGATATCAACAATGATACACCCCGGAAAGTTGCATGGATGACAGACGTGGCAGCCGCCATAAACCCATCCAACCAGATGATTGCAATGCACGTGAGACCCATCTTTGAGCAAGTTTATCAGATACTGCACCACCAACATAGCTTGCCTACGATCTCCAGTGCCGAGCATGCTAGTCTTCGTCTTCTCATGCATGTCATTAACTCCATGATGATGGCCTGTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

297

Amino Acids

32.42

Weight (kDa)

4.8

Isoelectric Point (pI)

50.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDC4_C PF21289 166 - 269 1.2e-17 Enhancer of mRNA-decapping protein 4, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 25, 466
AciI CCGC 1 cut(s) 723
AclWI GGATC 2 cut(s) 470, 483
AcvI CACGTG 1 cut(s) 760
AfaI GTAC 2 cut(s) 167, 639
AgsI TTSAA 2 cut(s) 201, 304
AjiI CACGTC 1 cut(s) 715
AjuI GAANNNNNNNTTGG 2 cut(s) 624, 656
AluBI AGCT 3 cut(s) 490, 661, 810
AluI AGCT 3 cut(s) 490, 661, 810
Alw21I GWGCWC 3 cut(s) 285, 541, 583
Alw26I GTCTC 1 cut(s) 757
AlwI GGATC 2 cut(s) 470, 483
AlwNI CAGNNNCTG 1 cut(s) 793
AoxI GGCC 2 cut(s) 663, 882
ApeKI GCWGC 3 cut(s) 347, 610, 719
ArsI GACNNNNNNTTYG 2 cut(s) 476, 508
AspA2I CCTAGG 1 cut(s) 86
AsuC2I CCSGG 1 cut(s) 691
AsuHPI GGTGA 1 cut(s) 158
AvrII CCTAGG 1 cut(s) 86
AxyI CCTNAGG 1 cut(s) 444
BamHI GGATCC 1 cut(s) 475
BanI GGYRCC 2 cut(s) 25, 466
BbrPI CACGTG 1 cut(s) 760
BbsI GAAGAC 2 cut(s) 836, 842
Bbv12I GWGCWC 3 cut(s) 285, 541, 583
BbvI GCAGC 3 cut(s) 334, 597, 731
BccI CCATC 3 cut(s) 742, 776, 874
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BciVI GTATCC 1 cut(s) 594
BclI TGATCA 1 cut(s) 136
BcnI CCSGG 1 cut(s) 691
BcoDI GTCTC 1 cut(s) 757
BfaI CTAG 3 cut(s) 87, 276, 840
BfuI GTATCC 1 cut(s) 594
BisI GCNGC 4 cut(s) 348, 611, 720, 723
BlnI CCTAGG 1 cut(s) 86
BlsI GCNGC 4 cut(s) 349, 612, 721, 724
BmcAI AGTACT 2 cut(s) 167, 639
Bme1390I CCNGG 1 cut(s) 691
BmgBI CACGTC 1 cut(s) 715
BmiI GGNNCC 3 cut(s) 27, 468, 477
BmrFI CCNGG 1 cut(s) 691
BmsI GCATC 6 cut(s) 29, 31, 37, 71, 223, 388
BpiI GAAGAC 2 cut(s) 836, 842
BpmI CTGGAG 1 cut(s) 808
Bpu10I CCTNAGC 1 cut(s) 582
BpuMI CCSGG 1 cut(s) 691
BsaAI YACGTR 1 cut(s) 760
BsaI GGTCTC 1 cut(s) 757
BsaJI CCNNGG 3 cut(s) 86, 631, 689
BsaWI WCCGGW 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 825
Bse21I CCTNAGG 1 cut(s) 444
Bse3DI GCAATG 1 cut(s) 759
BseDI CCNNGG 3 cut(s) 86, 631, 689
BseGI GGATG 5 cut(s) 307, 353, 403, 711, 734
BseMI GCAATG 1 cut(s) 759
BseMII CTCAG 7 cut(s) 183, 324, 351, 381, 435, 596, 617
BseNI ACTGG 1 cut(s) 825
BseRI GAGGAG 1 cut(s) 536
BseXI GCAGC 3 cut(s) 334, 597, 731
BsgI GTGCAG 2 cut(s) 204, 779
BshFI GGCC 2 cut(s) 665, 884
BshNI GGYRCC 2 cut(s) 25, 466
BsiHKAI GWGCWC 3 cut(s) 285, 541, 583
BsiSI CCGG 2 cut(s) 29, 691
BsmAI GTCTC 1 cut(s) 757
BsnI GGCC 2 cut(s) 665, 884
Bso31I GGTCTC 1 cut(s) 757
Bsp1286I GDGCHC 3 cut(s) 285, 541, 583
Bsp143I GATC 4 cut(s) 136, 475, 589, 819
BspACI CCGC 1 cut(s) 723
BspANI GGCC 2 cut(s) 665, 884
BspCNI CTCAG 7 cut(s) 182, 325, 352, 382, 436, 595, 618
BspLI GGNNCC 3 cut(s) 27, 468, 477
BspPI GGATC 2 cut(s) 470, 483
BspT107I GGYRCC 2 cut(s) 25, 466
BspTNI GGTCTC 1 cut(s) 757
BsrDI GCAATG 1 cut(s) 759
BsrI ACTGG 1 cut(s) 825
BssECI CCNNGG 3 cut(s) 86, 631, 689
BssMI GATC 4 cut(s) 136, 475, 589, 819
BssT1I CCWWGG 2 cut(s) 86, 631
Bst4CI ACNGT 2 cut(s) 428, 606
Bst6I CTCTTC 1 cut(s) 78
BstBAI YACGTR 1 cut(s) 760
BstC8I GCNNGC 4 cut(s) 219, 663, 812, 837
BstDEI CTNAG 7 cut(s) 169, 333, 360, 390, 444, 582, 626
BstEII GGTNACC 1 cut(s) 146
BstF5I GGATG 5 cut(s) 307, 353, 403, 711, 734
BstKTI GATC 4 cut(s) 139, 478, 592, 822
BstMAI GTCTC 1 cut(s) 757
BstMBI GATC 4 cut(s) 136, 475, 589, 819
BstMWI GCNNNNNNNGC 1 cut(s) 836
BstNSI RCATGY 2 cut(s) 839, 863
BstPI GGTNACC 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 689
BstV1I GCAGC 3 cut(s) 334, 597, 731
BstV2I GAAGAC 2 cut(s) 836, 842
BstX2I RGATCY 1 cut(s) 475
BstXI CCANNNNNNTGG 1 cut(s) 880
BstYI RGATCY 1 cut(s) 475
Bsu36I CCTNAGG 1 cut(s) 444
BsuI GTATCC 1 cut(s) 594
BsuRI GGCC 2 cut(s) 665, 884
BtrI CACGTC 1 cut(s) 715
BtsCI GGATG 5 cut(s) 307, 353, 403, 711, 734
BtsI GCAGTG 1 cut(s) 139
BtsIMutI CAGTG 4 cut(s) 139, 387, 433, 832
Cac8I GCNNGC 4 cut(s) 219, 663, 812, 837
CaiI CAGNNNCTG 1 cut(s) 793
Csp6I GTAC 2 cut(s) 166, 638
CviAII CATG 8 cut(s) 140, 570, 596, 702, 836, 856, 860, 874
CviQI GTAC 2 cut(s) 166, 638
DdeI CTNAG 7 cut(s) 169, 333, 360, 390, 444, 582, 626
DpnI GATC 4 cut(s) 138, 477, 591, 821
DpnII GATC 4 cut(s) 136, 475, 589, 819
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco130I CCWWGG 2 cut(s) 86, 631
Eco31I GGTCTC 1 cut(s) 757
Eco32I GATATC 1 cut(s) 673
Eco72I CACGTG 1 cut(s) 760
Eco81I CCTNAGG 1 cut(s) 444
Eco91I GGTNACC 1 cut(s) 146
EcoO65I GGTNACC 1 cut(s) 146
EcoRV GATATC 1 cut(s) 673
EcoT14I CCWWGG 2 cut(s) 86, 631
EcoT22I ATGCAT 1 cut(s) 861
ErhI CCWWGG 2 cut(s) 86, 631
FaeI CATG 8 cut(s) 143, 573, 599, 705, 839, 859, 863, 877
FalI AAGNNNNNCTT 4 cut(s) 402, 434, 624, 656
FatI CATG 8 cut(s) 139, 569, 595, 701, 835, 855, 859, 873
FbaI TGATCA 1 cut(s) 136
Fnu4HI GCNGC 4 cut(s) 348, 611, 720, 723
FokI GGATG 5 cut(s) 294, 340, 410, 718, 721
Fsp4HI GCNGC 4 cut(s) 348, 611, 720, 723
FspBI CTAG 3 cut(s) 87, 276, 840
GluI GCNGC 4 cut(s) 348, 611, 720, 723
GsuI CTGGAG 1 cut(s) 808
HaeIII GGCC 2 cut(s) 665, 884
HapII CCGG 2 cut(s) 29, 691
Hin1II CATG 8 cut(s) 143, 573, 599, 705, 839, 859, 863, 877
HincII GTYRAC 2 cut(s) 175, 424
HindII GTYRAC 2 cut(s) 175, 424
HinfI GANTC 2 cut(s) 5, 82
HpaI GTTAAC 1 cut(s) 424
HpaII CCGG 2 cut(s) 29, 691
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 2 cut(s) 175, 424
Hpy188I TCNGA 5 cut(s) 211, 334, 361, 627, 789
Hpy188III TCNNGA 1 cut(s) 443
Hpy8I GTNNAC 2 cut(s) 175, 424
HpyAV CCTTC 1 cut(s) 300
HpyCH4III ACNGT 2 cut(s) 428, 606
HpyCH4IV ACGT 2 cut(s) 714, 759
HpyF10VI GCNNNNNNNGC 1 cut(s) 836
HpyF3I CTNAG 7 cut(s) 169, 333, 360, 390, 444, 582, 626
HpySE526I ACGT 2 cut(s) 714, 759
Hsp92II CATG 8 cut(s) 143, 573, 599, 705, 839, 859, 863, 877
Ksp22I TGATCA 1 cut(s) 136
KspAI GTTAAC 1 cut(s) 424
Kzo9I GATC 4 cut(s) 136, 475, 589, 819
LmnI GCTCC 2 cut(s) 487, 654
Lsp1109I GCAGC 3 cut(s) 334, 597, 731
LweI GCATC 6 cut(s) 29, 31, 37, 71, 223, 388
MaeI CTAG 3 cut(s) 87, 276, 840
MaeII ACGT 2 cut(s) 714, 759
MaeIII GTNAC 2 cut(s) 146, 502
MalI GATC 4 cut(s) 138, 477, 591, 821
MboI GATC 4 cut(s) 136, 475, 589, 819
MboII GAAGA 4 cut(s) 65, 584, 836, 842
MfeI CAATTG 1 cut(s) 375
MflI RGATCY 1 cut(s) 475
MhlI GDGCHC 3 cut(s) 285, 541, 583
MluCI AATT 2 cut(s) 255, 375
MlyI GAGTC 1 cut(s) 91
MmeI TCCRAC 3 cut(s) 335, 503, 762
MnlI CCTC 9 cut(s) 81, 340, 367, 385, 439, 457, 514, 517, 633
Mph1103I ATGCAT 1 cut(s) 861
MseI TTAA 7 cut(s) 113, 159, 320, 341, 423, 456, 867
MslI CAYNNNNRTG 3 cut(s) 144, 574, 878
MspA1I CMGCKG 1 cut(s) 661
MspI CCGG 2 cut(s) 29, 691
MspR9I CCNGG 1 cut(s) 691
MunI CAATTG 1 cut(s) 375
MwoI GCNNNNNNNGC 1 cut(s) 836
NciI CCSGG 1 cut(s) 691
NdeII GATC 4 cut(s) 136, 475, 589, 819
NlaIII CATG 8 cut(s) 143, 573, 599, 705, 839, 859, 863, 877
NlaIV GGNNCC 3 cut(s) 27, 468, 477
NmeAIII GCCGAG 1 cut(s) 856
NmuCI GTSAC 1 cut(s) 146
NsiI ATGCAT 1 cut(s) 861
NspI RCATGY 2 cut(s) 839, 863
PaeI GCATGC 1 cut(s) 839
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 4 cut(s) 349, 612, 721, 724
PleI GAGTC 1 cut(s) 90
PmaCI CACGTG 1 cut(s) 760
PmlI CACGTG 1 cut(s) 760
PpsI GAGTC 1 cut(s) 90
Ppu21I YACGTR 1 cut(s) 760
PspCI CACGTG 1 cut(s) 760
PspEI GGTNACC 1 cut(s) 146
PspN4I GGNNCC 3 cut(s) 27, 468, 477
PstNI CAGNNNCTG 1 cut(s) 793
PsuI RGATCY 1 cut(s) 475
PvuII CAGCTG 1 cut(s) 661
RsaI GTAC 2 cut(s) 167, 639
RsaNI GTAC 2 cut(s) 166, 638
RseI CAYNNNNRTG 3 cut(s) 144, 574, 878
SaqAI TTAA 7 cut(s) 113, 159, 320, 341, 423, 456, 867
SatI GCNGC 4 cut(s) 348, 611, 720, 723
Sau3AI GATC 4 cut(s) 136, 475, 589, 819
ScaI AGTACT 2 cut(s) 167, 639
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 691
SduI GDGCHC 3 cut(s) 285, 541, 583
SfaNI GCATC 6 cut(s) 29, 31, 37, 71, 223, 388
SmiMI CAYNNNNRTG 3 cut(s) 144, 574, 878
SphI GCATGC 1 cut(s) 839
Sse9I AATT 2 cut(s) 255, 375
SsiI CCGC 1 cut(s) 723
SspMI CTAG 3 cut(s) 87, 276, 840
StyD4I CCNGG 1 cut(s) 689
StyI CCWWGG 2 cut(s) 86, 631
TaaI ACNGT 2 cut(s) 428, 606
TaiI ACGT 2 cut(s) 717, 762
TaqI TCGA 1 cut(s) 225
TasI AATT 2 cut(s) 255, 375
TatI WGTACW 2 cut(s) 165, 637
TauI GCSGC 1 cut(s) 725
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 7 cut(s) 113, 159, 320, 341, 423, 456, 867
Tru9I TTAA 7 cut(s) 113, 159, 320, 341, 423, 456, 867
TscAI CASTG 4 cut(s) 139, 394, 433, 832
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 3 cut(s) 347, 610, 719
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 3 cut(s) 200, 342, 584
TspRI CASTG 4 cut(s) 139, 394, 433, 832
XceI RCATGY 2 cut(s) 839, 863
XmaJI CCTAGG 1 cut(s) 86
XspI CTAG 3 cut(s) 87, 276, 840
ZrmI AGTACT 2 cut(s) 167, 639
Zsp2I ATGCAT 1 cut(s) 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.