Rh5BG515500

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000324
Physical Location & Seq
Reverse (-)
81681022 .. 81688089
7068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG515500.1

Sequence Viewer

Length: 2034 bp
ATGGCGTCCCCCGGAAACCCCAATCCGCCGCCGCCGCAGCAGCAGCAGCCCTTCGACATGGCCAAGTTCTTTAAACCCACAAGCCCAACCCCTCTCTCCCCCCATTCCCAGCCTCAGACCCAGGCCCCCACCCAAAACCCTAACCCTAATCTGAACTCCTCAGGCTTCCCAATCCCTCCGGCCTCTTACCCTCCCCCCTCTGGGCCCTACTCCTACCCTCCCCAAACGGCGCCGTATCACCAGCAGCAATTCCAGTACCAGCACCACCCTCAGCCTCATCCTCACAACCACCCCCAAATTCCTTACCCTCAAGACCACCAGCTGCTTCAGCAGCGGTCGCTCTCGTTTCCCATCCCGCCCCTGGCTCCCGGTAATTACAACATTGCCGCCGCCGCCGCCGCCGCCTCCAACCCCGGAAACGCCACCGCCACCAACCCCAATTCCGGCGCCCGAATCATGGCCCTGCTCGGTGCTCCTTCCTCCAGTCTAGAAATGCCGCCGCAGCCTGAGTTGTCGGTCCCCGGCTCTGGCGGGGTTTCGATGGTGCCCACTCTTCCTATGGGGATTCCACCCTCCCCGGCTCGAATGCCGAGCAATAAGCTGCCGAAGGGCAGGCATTTGATTGGGGATAGCGTGGTTTACGATGTGGATGTTAGGTTGCCCGGGGAGTTTCAGCCGCAGCTGGAAGTTACCCCCATTACTAAGTATGGTTCGGATCCTCAGCTGGTGTTGGGCCGCCAAATTGCGGTGAATAAGTCGTATATATGCTATGGATTGAAGCAGGGGAATATTCGGGTTTTGAATATACACACTGCATTGAGATCTTTGTTTCGAGCTCATACACAGGCGGTGTCAACTAATTCAGCACCAAAACCAATGATACAAGCTACTAGTTCTGAGGGTGCATCCTTGAGGTATCCTGTGCGCACTGCTTCAGTTGATCCTTCCAATTCAAAAGATATTACCACTTCGTCTATGGAATCAAAACCTGTTGCATCGGCACCGGAGATTAGTGATGCTGATGCTGTTTTTGTAGCATCACAACCTCTTCCTTTGAGTCCTAAGTTGTCAGGGAAACTTTCTGGTTTAAGAAGCCCGACAGATAGCAGTGATCATGGTGGTGACCAACAAGTTAATGAGTACTCAGTTGACAGGCAGATGAATACTGCTCGTTCAAACTTGTCTGATATGCCTGCACTCGATGATGATGCAAGGAATGATGAACAGAAAATTGCACAAGACGAAGTATCTAGTGTGCTCAATCCTCCTATTATGTTCAAACATCCAACCCATTTAATAACTCCCTCTGAGATTTTAATGGCTGCTTCATCCTCTGAGAATACAAATCCAATTGACAGCAACACTGAGGGGGATGCAAAAATCCAAGATGTTCTTGTTAACAGTGATGTGGGTAATCCTGAGGTGGAAGTTAAGGAAGCTATCAGCTCCGCATCATCAGTGACTCAAACTCTAAGTGGAGAACTGGCTGATGGTCAACGTAAGTTAGTAGCTCTTGCAGCTGCACGGGGAAACTCAAGTGCGGTAAATCCCCTAGTCACTCAACTAACCAATGGACCTTTGGGTGGTCTCCATGAGAAGGTTGAGGTGCCTTTGGATCCAACAAAGGAGCTGTCAAGGTTGGTAACTGAACGCAAGTATGAGGAGGCTTTCACAGGTGCTCTACAAAGAAGTGATGTTGGCATTGTATCATGGTTATGTGCTCAGGTTGATCTTCATGGGATACTGTTGCTGCAACCTGTTCCTCTGAGCCAAGGAGTACTTCTTTCGCTCCTGCAACAGCTGGCCTGTGATATCAACAATGATACACCCCGGAAAGTTGCATGGATGACGGACGTGGCAGCCGCCATAAACCCATCCAACCAGATGATTGCAATGCACGTGAGACCCATCTTTGAGCAAGTTTATCAGATACTGCACCATCAACATAGCTTGCCTACGATCTCCAGTGCTGAGCATGCTAGTCTTCGTCTTCTCATGCATGTCATTAACTCCATGATGATGGCCTGTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

677

Amino Acids

72.65

Weight (kDa)

6.05

Isoelectric Point (pI)

51.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDC4_C PF21289 546 - 649 5.3e-17 Enhancer of mRNA-decapping protein 4, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 926
AccB1I GGYRCC 5 cut(s) 229, 446, 544, 1000, 1606
AclWI GGATC 5 cut(s) 710, 723, 935, 1610, 1623
AcoI YGGCCR 1 cut(s) 60
AcsI RAATTY 1 cut(s) 297
AcuI CTGAAG 2 cut(s) 311, 918
AcvI CACGTG 1 cut(s) 1900
AcyI GRCGYC 3 cut(s) 5, 230, 447
AfaI GTAC 3 cut(s) 257, 1142, 1779
AfiI CCNNNNNNNGG 9 cut(s) 200, 201, 361, 443, 457, 527, 745, 1583, 1597
AgsI TTSAA 5 cut(s) 778, 802, 954, 1176, 1279
AhlI ACTAGT 1 cut(s) 890
AjiI CACGTC 1 cut(s) 1855
AjnI CCWGG 2 cut(s) 120, 360
AjuI GAANNNNNNNTTGG 2 cut(s) 1764, 1796
Alw21I GWGCWC 5 cut(s) 475, 838, 1260, 1681, 1723
Alw26I GTCTC 2 cut(s) 1592, 1897
AlwI GGATC 5 cut(s) 710, 723, 935, 1610, 1623
AlwNI CAGNNNCTG 1 cut(s) 1933
Ama87I CYCGRG 1 cut(s) 662
AoxI GGCC 8 cut(s) 60, 123, 180, 203, 459, 733, 1803, 2022
ApaI GGGCCC 1 cut(s) 207
ApoI RAATTY 1 cut(s) 297
ArsI GACNNNNNNTTYG 2 cut(s) 1616, 1648
AspLEI GCGC 3 cut(s) 232, 449, 927
AspS9I GGNCC 7 cut(s) 124, 203, 204, 460, 517, 733, 1574
AsuC2I CCSGG 8 cut(s) 12, 369, 414, 522, 578, 663, 664, 1831
AsuHPI GGTGA 3 cut(s) 230, 760, 1133
AvaI CYCGRG 1 cut(s) 662
AvaII GGWCC 2 cut(s) 517, 1574
AxyI CCTNAGG 2 cut(s) 160, 1419
BaeGI GKGCMC 2 cut(s) 207, 549
BalI TGGCCA 1 cut(s) 62
BamHI GGATCC 2 cut(s) 715, 1615
BanI GGYRCC 5 cut(s) 229, 446, 544, 1000, 1606
BanII GRGCYC 2 cut(s) 207, 838
BbrPI CACGTG 1 cut(s) 1900
BbsI GAAGAC 2 cut(s) 1976, 1982
Bbv12I GWGCWC 5 cut(s) 475, 838, 1260, 1681, 1723
BbvCI CCTCAGC 2 cut(s) 270, 720
BccI CCATC 7 cut(s) 359, 535, 1484, 1882, 1916, 1947, 2014
BceAI ACGGC 2 cut(s) 217, 243
BcgI CGANNNNNNTGC 2 cut(s) 1190, 1224
BciT130I CCWGG 2 cut(s) 122, 362
BciVI GTATCC 2 cut(s) 927, 1734
BclI TGATCA 1 cut(s) 1111
BcnI CCSGG 8 cut(s) 12, 369, 414, 522, 578, 663, 664, 1831
BcoDI GTCTC 2 cut(s) 1592, 1897
BcuI ACTAGT 1 cut(s) 890
BfaI CTAG 5 cut(s) 488, 891, 1251, 1553, 1980
BfoI RGCGCY 2 cut(s) 233, 450
BfuI GTATCC 2 cut(s) 927, 1734
BglII AGATCT 1 cut(s) 821
BlpI GCTNAGC 1 cut(s) 1971
BmcAI AGTACT 2 cut(s) 1142, 1779
Bme18I GGWCC 2 cut(s) 517, 1574
BmeT110I CYCGRG 1 cut(s) 662
BmgBI CACGTC 1 cut(s) 1855
BmgT120I GGNCC 7 cut(s) 124, 203, 204, 460, 517, 733, 1574
BmsI GCATC 8 cut(s) 914, 1004, 1006, 1012, 1046, 1198, 1363, 1460
BpiI GAAGAC 2 cut(s) 1976, 1982
BpmI CTGGAG 2 cut(s) 466, 1948
Bpu10I CCTNAGC 3 cut(s) 270, 720, 1722
Bpu1102I GCTNAGC 1 cut(s) 1971
BpuEI CTTGAG 3 cut(s) 294, 931, 1519
BpuMI CCSGG 8 cut(s) 12, 369, 414, 522, 578, 663, 664, 1831
BsaAI YACGTR 1 cut(s) 1900
BsaHI GRCGYC 3 cut(s) 5, 230, 447
BsaI GGTCTC 2 cut(s) 1592, 1897
BsaWI WCCGGW 1 cut(s) 1003
Bsc4I CCNNNNNNNGG 9 cut(s) 200, 201, 361, 443, 457, 527, 745, 1583, 1597
Bse1I ACTGG 4 cut(s) 253, 483, 1488, 1965
Bse21I CCTNAGG 2 cut(s) 160, 1419
Bse3DI GCAATG 2 cut(s) 381, 1899
BseBI CCWGG 2 cut(s) 122, 362
BseGI GGATG 9 cut(s) 277, 351, 655, 905, 1282, 1328, 1378, 1851, 1874
BseLI CCNNNNNNNGG 9 cut(s) 200, 201, 361, 443, 457, 527, 745, 1583, 1597
BseMI GCAATG 2 cut(s) 381, 1899
BseNI ACTGG 4 cut(s) 253, 483, 1488, 1965
BseRI GAGGAG 2 cut(s) 148, 1676
BseSI GKGCMC 2 cut(s) 207, 549
BseYI CCCAGC 1 cut(s) 108
BsgI GTGCAG 3 cut(s) 1179, 1506, 1919
Bsh1285I CGRYCG 1 cut(s) 338
BshFI GGCC 8 cut(s) 62, 125, 182, 205, 461, 735, 1805, 2024
BshNI GGYRCC 5 cut(s) 229, 446, 544, 1000, 1606
BsiEI CGRYCG 1 cut(s) 338
BsiHKAI GWGCWC 5 cut(s) 475, 838, 1260, 1681, 1723
BsiHKCI CYCGRG 1 cut(s) 662
BslFI GGGAC 1 cut(s) 503
BslI CCNNNNNNNGG 9 cut(s) 200, 201, 361, 443, 457, 527, 745, 1583, 1597
BsmAI GTCTC 2 cut(s) 1592, 1897
BsmFI GGGAC 1 cut(s) 503
BsmI GAATGC 1 cut(s) 591
BsnI GGCC 8 cut(s) 62, 125, 182, 205, 461, 735, 1805, 2024
Bso31I GGTCTC 2 cut(s) 1592, 1897
BsoBI CYCGRG 1 cut(s) 662
Bsp120I GGGCCC 1 cut(s) 203
Bsp1286I GDGCHC 7 cut(s) 207, 475, 549, 838, 1260, 1681, 1723
Bsp143I GATC 7 cut(s) 715, 821, 940, 1111, 1615, 1729, 1959
Bsp1720I GCTNAGC 1 cut(s) 1971
BspANI GGCC 8 cut(s) 62, 125, 182, 205, 461, 735, 1805, 2024
BspPI GGATC 5 cut(s) 710, 723, 935, 1610, 1623
BspT107I GGYRCC 5 cut(s) 229, 446, 544, 1000, 1606
BspTNI GGTCTC 2 cut(s) 1592, 1897
BsrDI GCAATG 2 cut(s) 381, 1899
BsrI ACTGG 4 cut(s) 253, 483, 1488, 1965
BssMI GATC 7 cut(s) 715, 821, 940, 1111, 1615, 1729, 1959
BssNI GRCGYC 3 cut(s) 5, 230, 447
BssT1I CCWWGG 1 cut(s) 1771
Bst2UI CCWGG 2 cut(s) 122, 362
Bst4CI ACNGT 2 cut(s) 1403, 1746
Bst6I CTCTTC 2 cut(s) 558, 1053
BstACI GRCGYC 3 cut(s) 5, 230, 447
BstBAI YACGTR 1 cut(s) 1900
BstC8I GCNNGC 5 cut(s) 614, 1194, 1803, 1952, 1977
BstEII GGTNACC 1 cut(s) 1121
BstF5I GGATG 9 cut(s) 277, 351, 655, 905, 1282, 1328, 1378, 1851, 1874
BstH2I RGCGCY 2 cut(s) 233, 450
BstHHI GCGC 3 cut(s) 232, 449, 927
BstKTI GATC 7 cut(s) 718, 824, 943, 1114, 1618, 1732, 1962
BstMAI GTCTC 2 cut(s) 1592, 1897
BstMBI GATC 7 cut(s) 715, 821, 940, 1111, 1615, 1729, 1959
BstMCI CGRYCG 1 cut(s) 338
BstNI CCWGG 2 cut(s) 122, 362
BstNSI RCATGY 2 cut(s) 1979, 2003
BstPI GGTNACC 1 cut(s) 1121
BstSLI GKGCMC 2 cut(s) 207, 549
BstV2I GAAGAC 2 cut(s) 1976, 1982
BstX2I RGATCY 3 cut(s) 715, 821, 1615
BstXI CCANNNNNNTGG 1 cut(s) 2020
BstYI RGATCY 3 cut(s) 715, 821, 1615
Bsu36I CCTNAGG 2 cut(s) 160, 1419
BsuI GTATCC 2 cut(s) 927, 1734
BsuRI GGCC 8 cut(s) 62, 125, 182, 205, 461, 735, 1805, 2024
BtrI CACGTC 1 cut(s) 1855
BtsCI GGATG 9 cut(s) 277, 351, 655, 905, 1282, 1328, 1378, 1851, 1874
BtsI GCAGTG 3 cut(s) 810, 927, 1114
BtsIMutI CAGTG 7 cut(s) 810, 927, 1114, 1362, 1408, 1464, 1972
Cac8I GCNNGC 5 cut(s) 614, 1194, 1803, 1952, 1977
CaiI CAGNNNCTG 1 cut(s) 1933
CfoI GCGC 3 cut(s) 232, 449, 927
Cfr13I GGNCC 7 cut(s) 124, 203, 204, 460, 517, 733, 1574
Cfr9I CCCGGG 1 cut(s) 662
Csp6I GTAC 3 cut(s) 256, 1141, 1778
CviQI GTAC 3 cut(s) 256, 1141, 1778
DinI GGCGCC 2 cut(s) 231, 448
DpnI GATC 7 cut(s) 717, 823, 942, 1113, 1617, 1731, 1961
DpnII GATC 7 cut(s) 715, 821, 940, 1111, 1615, 1729, 1959
DraI TTTAAA 1 cut(s) 73
EaeI YGGCCR 1 cut(s) 60
Eam1104I CTCTTC 2 cut(s) 558, 1053
EarI CTCTTC 2 cut(s) 558, 1053
EciI GGCGGA 1 cut(s) 15
Ecl136II GAGCTC 1 cut(s) 836
Eco130I CCWWGG 1 cut(s) 1771
Eco24I GRGCYC 2 cut(s) 207, 838
Eco31I GGTCTC 2 cut(s) 1592, 1897
Eco32I GATATC 1 cut(s) 1813
Eco47I GGWCC 2 cut(s) 517, 1574
Eco53kI GAGCTC 1 cut(s) 836
Eco57I CTGAAG 2 cut(s) 311, 918
Eco72I CACGTG 1 cut(s) 1900
Eco81I CCTNAGG 2 cut(s) 160, 1419
Eco88I CYCGRG 1 cut(s) 662
Eco91I GGTNACC 1 cut(s) 1121
EcoICRI GAGCTC 1 cut(s) 836
EcoO109I RGGNCCY 2 cut(s) 124, 204
EcoO65I GGTNACC 1 cut(s) 1121
EcoRII CCWGG 2 cut(s) 120, 360
EcoRV GATATC 1 cut(s) 1813
EcoT14I CCWWGG 1 cut(s) 1771
EcoT22I ATGCAT 1 cut(s) 2001
EcoT38I GRGCYC 2 cut(s) 207, 838
EgeI GGCGCC 2 cut(s) 231, 448
EheI GGCGCC 2 cut(s) 231, 448
ErhI CCWWGG 1 cut(s) 1771
FalI AAGNNNNNCTT 4 cut(s) 1377, 1409, 1764, 1796
FaqI GGGAC 1 cut(s) 503
FauI CCCGC 2 cut(s) 363, 524
FbaI TGATCA 1 cut(s) 1111
FokI GGATG 9 cut(s) 264, 338, 662, 892, 1269, 1315, 1385, 1858, 1861
FriOI GRGCYC 2 cut(s) 207, 838
FspAI RTGCGCAY 1 cut(s) 926
FspBI CTAG 5 cut(s) 488, 891, 1251, 1553, 1980
FspI TGCGCA 1 cut(s) 926
GlaI GCGC 3 cut(s) 231, 448, 926
GsaI CCCAGC 1 cut(s) 112
GsuI CTGGAG 2 cut(s) 466, 1948
HaeII RGCGCY 2 cut(s) 233, 450
HaeIII GGCC 8 cut(s) 62, 125, 182, 205, 461, 735, 1805, 2024
HhaI GCGC 3 cut(s) 232, 449, 927
Hin1I GRCGYC 3 cut(s) 5, 230, 447
Hin6I GCGC 3 cut(s) 230, 447, 925
HinP1I GCGC 3 cut(s) 230, 447, 925
HincII GTYRAC 4 cut(s) 855, 1150, 1399, 1496
HindII GTYRAC 4 cut(s) 855, 1150, 1399, 1496
HinfI GANTC 5 cut(s) 453, 565, 980, 1057, 1462
HpaI GTTAAC 1 cut(s) 1399
HphI GGTGA 3 cut(s) 230, 760, 1133
Hpy166II GTNNAC 5 cut(s) 640, 855, 1150, 1399, 1496
Hpy188I TCNGA 9 cut(s) 117, 153, 715, 898, 1186, 1309, 1336, 1767, 1929
Hpy188III TCNNGA 3 cut(s) 311, 488, 1418
Hpy8I GTNNAC 5 cut(s) 640, 855, 1150, 1399, 1496
HpyAV CCTTC 5 cut(s) 61, 486, 601, 954, 1591
HpyCH4III ACNGT 2 cut(s) 1403, 1746
HpyCH4IV ACGT 3 cut(s) 1498, 1854, 1899
HpySE526I ACGT 3 cut(s) 1498, 1854, 1899
Hsp92I GRCGYC 3 cut(s) 5, 230, 447
HspAI GCGC 3 cut(s) 230, 447, 925
KasI GGCGCC 2 cut(s) 229, 446
Ksp22I TGATCA 1 cut(s) 1111
KspAI GTTAAC 1 cut(s) 1399
Kzo9I GATC 7 cut(s) 715, 821, 940, 1111, 1615, 1729, 1959
LmnI GCTCC 5 cut(s) 370, 478, 1451, 1627, 1794
LweI GCATC 8 cut(s) 914, 1004, 1006, 1012, 1046, 1198, 1363, 1460
MaeI CTAG 5 cut(s) 488, 891, 1251, 1553, 1980
MaeII ACGT 3 cut(s) 1498, 1854, 1899
MaeIII GTNAC 5 cut(s) 688, 1121, 1459, 1555, 1642
MalI GATC 7 cut(s) 717, 823, 942, 1113, 1617, 1731, 1961
MboI GATC 7 cut(s) 715, 821, 940, 1111, 1615, 1729, 1959
MboII GAAGA 5 cut(s) 545, 1040, 1724, 1976, 1982
MfeI CAATTG 1 cut(s) 1350
MflI RGATCY 3 cut(s) 715, 821, 1615
MhlI GDGCHC 7 cut(s) 207, 475, 549, 838, 1260, 1681, 1723
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 9 cut(s) 248, 297, 373, 439, 741, 859, 949, 1230, 1350
MluNI TGGCCA 1 cut(s) 62
Mly113I GGCGCC 2 cut(s) 230, 447
MlyI GAGTC 2 cut(s) 1066, 1456
MmeI TCCRAC 4 cut(s) 432, 1310, 1643, 1902
Mox20I TGGCCA 1 cut(s) 62
Mph1103I ATGCAT 1 cut(s) 2001
MscI TGGCCA 1 cut(s) 62
MseI TTAA 8 cut(s) 72, 1088, 1134, 1295, 1316, 1398, 1431, 2007
MslI CAYNNNNRTG 3 cut(s) 1119, 1714, 2018
Msp20I TGGCCA 1 cut(s) 62
MspA1I CMGCKG 6 cut(s) 322, 334, 682, 724, 1520, 1801
MunI CAATTG 1 cut(s) 1350
Mva1269I GAATGC 1 cut(s) 591
MvaI CCWGG 2 cut(s) 122, 362
NarI GGCGCC 2 cut(s) 230, 447
NciI CCSGG 8 cut(s) 12, 369, 414, 522, 578, 663, 664, 1831
NdeII GATC 7 cut(s) 715, 821, 940, 1111, 1615, 1729, 1959
NmeAIII GCCGAG 1 cut(s) 615
NmuCI GTSAC 3 cut(s) 1121, 1459, 1555
NsbI TGCGCA 1 cut(s) 926
NsiI ATGCAT 1 cut(s) 2001
NspI RCATGY 2 cut(s) 1979, 2003
PaeI GCATGC 1 cut(s) 1979
PctI GAATGC 1 cut(s) 591
PfeI GAWTC 3 cut(s) 453, 565, 980
PleI GAGTC 2 cut(s) 1065, 1456
PluTI GGCGCC 2 cut(s) 233, 450
PmaCI CACGTG 1 cut(s) 1900
PmlI CACGTG 1 cut(s) 1900
PpsI GAGTC 2 cut(s) 1065, 1456
Ppu21I YACGTR 1 cut(s) 1900
Psp124BI GAGCTC 1 cut(s) 838
Psp6I CCWGG 2 cut(s) 120, 360
PspCI CACGTG 1 cut(s) 1900
PspEI GGTNACC 1 cut(s) 1121
PspFI CCCAGC 1 cut(s) 108
PspGI CCWGG 2 cut(s) 120, 360
PspOMI GGGCCC 1 cut(s) 203
PspPI GGNCC 7 cut(s) 124, 203, 204, 460, 517, 733, 1574
PstNI CAGNNNCTG 1 cut(s) 1933
PsuI RGATCY 3 cut(s) 715, 821, 1615
PvuII CAGCTG 5 cut(s) 322, 682, 724, 1520, 1801
RsaI GTAC 3 cut(s) 257, 1142, 1779
RsaNI GTAC 3 cut(s) 256, 1141, 1778
RseI CAYNNNNRTG 3 cut(s) 1119, 1714, 2018
SacI GAGCTC 1 cut(s) 838
SaqAI TTAA 8 cut(s) 72, 1088, 1134, 1295, 1316, 1398, 1431, 2007
Sau3AI GATC 7 cut(s) 715, 821, 940, 1111, 1615, 1729, 1959
Sau96I GGNCC 7 cut(s) 124, 203, 204, 460, 517, 733, 1574
ScaI AGTACT 2 cut(s) 1142, 1779
SchI GAGTC 2 cut(s) 1066, 1456
SduI GDGCHC 7 cut(s) 207, 475, 549, 838, 1260, 1681, 1723
SfaNI GCATC 8 cut(s) 914, 1004, 1006, 1012, 1046, 1198, 1363, 1460
SfoI GGCGCC 2 cut(s) 231, 448
SinI GGWCC 2 cut(s) 517, 1574
SmaI CCCGGG 1 cut(s) 664
SmiMI CAYNNNNRTG 3 cut(s) 1119, 1714, 2018
SmlI CTYRAG 3 cut(s) 309, 910, 1534
SmoI CTYRAG 3 cut(s) 309, 910, 1534
SpeI ACTAGT 1 cut(s) 890
SphI GCATGC 1 cut(s) 1979
Sse9I AATT 9 cut(s) 248, 297, 373, 439, 741, 859, 949, 1230, 1350
SspDI GGCGCC 2 cut(s) 229, 446
SspI AATATT 1 cut(s) 790
SspMI CTAG 5 cut(s) 488, 891, 1251, 1553, 1980
SstI GAGCTC 1 cut(s) 838
StyI CCWWGG 1 cut(s) 1771
TaaI ACNGT 2 cut(s) 1403, 1746
TaiI ACGT 3 cut(s) 1501, 1857, 1902
TaqI TCGA 5 cut(s) 54, 539, 583, 832, 1200
TaqII GACCGA 1 cut(s) 505
TasI AATT 9 cut(s) 248, 297, 373, 439, 741, 859, 949, 1230, 1350
TatI WGTACW 2 cut(s) 1140, 1777
TfiI GAWTC 3 cut(s) 453, 565, 980
Tru1I TTAA 8 cut(s) 72, 1088, 1134, 1295, 1316, 1398, 1431, 2007
Tru9I TTAA 8 cut(s) 72, 1088, 1134, 1295, 1316, 1398, 1431, 2007
TscAI CASTG 7 cut(s) 817, 934, 1114, 1369, 1408, 1464, 1972
TseFI GTSAC 3 cut(s) 1121, 1459, 1555
Tsp45I GTSAC 3 cut(s) 1121, 1459, 1555
TspDTI ATGAA 4 cut(s) 1175, 1236, 1317, 1724
TspGWI ACGGA 1 cut(s) 1865
TspMI CCCGGG 1 cut(s) 662
TspRI CASTG 7 cut(s) 817, 934, 1114, 1369, 1408, 1464, 1972
VpaK11BI GGWCC 2 cut(s) 517, 1574
XapI RAATTY 1 cut(s) 297
XbaI TCTAGA 1 cut(s) 487
XceI RCATGY 2 cut(s) 1979, 2003
XcmI CCANNNNNNNNNTGG 4 cut(s) 358, 556, 973, 1576
XmaI CCCGGG 1 cut(s) 662
XspI CTAG 5 cut(s) 488, 891, 1251, 1553, 1980
ZrmI AGTACT 2 cut(s) 1142, 1779
Zsp2I ATGCAT 1 cut(s) 2001
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.