Rmu_sc0000013.1_g000017

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000013.1
OG0000324
Physical Location & Seq
Reverse (-)
74772 .. 77306
2535 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000013.1_g000017.1.cds

Sequence Viewer

Length: 900 bp
atgcggagcaataagctactgaaaggcaggcatttgattggggatagcgtggtctacgatgtgggtgtttggttgcctggggagtttcagccgcagctagaagttacccccatagctaagtatgtttcggatcctcagctggtgttgggccgccatattgcgggggtcacaaacatggctttctttgccgaggatgttcaccttttggctagtgtgagtgtagaaggatggctttttgtgtggaaaatttgtgaaggtccagatgaagaaggcacgccacaaatcacaggaaagattgttattgccattcaaatagttggtgagggggaagctgttcgtccacgagtttgttggcactgtcataaacaagacgttttggctgttggggttgggaagcgtgttctacgaattgatactactaaagttgcaaagggtgaagtcccttctgctgaggatactattaagtgtcctgttgaaaaccttattgatggggtccaatttgttggtaaacatgatggagaggtgacagatttatcaatgtgccaatggatgaccacctggctggtttctgcttctatggatggaactggcccacttaatcgggaagtgaagatctggtcctcagcgagtgaagaaggctggctgcttcccagtgatgctgagtcatggaagtgtacccagaccttagagttaaagagctctgctcaatctcgagttgaggatgcattctttaatcaagtcatagcattgttacaagctggccttcttttacttgcaaattctaagaagaatgctatatatggcatgcacttagactttggtggtgagccagcatttacaatgcctattttgagctttactgggacaaatatatcacctcatggtgaacaaatcatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

299

Amino Acids

32.74

Weight (kDa)

5.2

Isoelectric Point (pI)

38.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 54
AciI CCGC 4 cut(s) 4, 92, 151, 161
AclWI GGATC 2 cut(s) 125, 138
AcsI RAATTY 2 cut(s) 246, 778
AfaI GTAC 1 cut(s) 676
AfiI CCNNNNNNNGG 1 cut(s) 160
AgsI TTSAA 2 cut(s) 311, 476
AjnI CCWGG 2 cut(s) 76, 557
AluBI AGCT 8 cut(s) 16, 97, 116, 139, 332, 699, 758, 855
AluI AGCT 8 cut(s) 16, 97, 116, 139, 332, 699, 758, 855
Alw21I GWGCWC 1 cut(s) 701
AlwI GGATC 2 cut(s) 125, 138
Ama87I CYCGRG 1 cut(s) 711
AoxI GGCC 3 cut(s) 148, 589, 760
ApeKI GCWGC 2 cut(s) 94, 643
ApoI RAATTY 2 cut(s) 246, 778
Asp700I GAANNNNTTC 1 cut(s) 333
AspS9I GGNCC 5 cut(s) 148, 257, 493, 590, 618
AsuHPI GGTGA 7 cut(s) 191, 332, 446, 535, 836, 867, 896
AvaI CYCGRG 1 cut(s) 711
AvaII GGWCC 3 cut(s) 257, 493, 618
BamHI GGATCC 1 cut(s) 130
BanII GRGCYC 1 cut(s) 701
BauI CACGAG 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 701
BbvCI CCTCAGC 3 cut(s) 135, 450, 622
BbvI GCAGC 2 cut(s) 106, 630
BccI CCATC 4 cut(s) 222, 482, 509, 575
BciT130I CCWGG 2 cut(s) 78, 559
BciVI GTATCC 1 cut(s) 448
BfaI CTAG 2 cut(s) 98, 210
BfuI GTATCC 1 cut(s) 448
BglII AGATCT 1 cut(s) 612
BisI GCNGC 4 cut(s) 92, 95, 151, 644
BlsI GCNGC 4 cut(s) 93, 96, 152, 645
Bme1390I CCNGG 2 cut(s) 78, 559
Bme18I GGWCC 3 cut(s) 257, 493, 618
BmeT110I CYCGRG 1 cut(s) 711
BmgT120I GGNCC 5 cut(s) 148, 257, 493, 590, 618
BmiI GGNNCC 2 cut(s) 132, 494
BmrFI CCNGG 2 cut(s) 78, 559
BmrI ACTGGG 2 cut(s) 645, 870
BmsI GCATC 2 cut(s) 646, 712
BmuI ACTGGG 2 cut(s) 645, 870
BplI GAGNNNNNCTC 2 cut(s) 688, 720
Bpu10I CCTNAGC 3 cut(s) 135, 450, 622
BsaJI CCNNGG 2 cut(s) 77, 189
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse1I ACTGG 3 cut(s) 592, 651, 865
BseBI CCWGG 2 cut(s) 78, 559
BseDI CCNNGG 2 cut(s) 77, 189
BseGI GGATG 5 cut(s) 199, 233, 555, 586, 727
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMII CTCAG 4 cut(s) 149, 441, 636, 651
BseNI ACTGG 3 cut(s) 592, 651, 865
BseXI GCAGC 2 cut(s) 106, 630
BshFI GGCC 3 cut(s) 150, 591, 762
BsiHKAI GWGCWC 1 cut(s) 701
BsiHKCI CYCGRG 1 cut(s) 711
BslFI GGGAC 2 cut(s) 425, 877
BslI CCNNNNNNNGG 1 cut(s) 160
BsmFI GGGAC 2 cut(s) 425, 877
BsmI GAATGC 2 cut(s) 725, 796
BsnI GGCC 3 cut(s) 150, 591, 762
BsoBI CYCGRG 1 cut(s) 711
Bsp1286I GDGCHC 1 cut(s) 701
Bsp143I GATC 2 cut(s) 130, 612
BspACI CCGC 4 cut(s) 4, 92, 151, 161
BspANI GGCC 3 cut(s) 150, 591, 762
BspCNI CTCAG 4 cut(s) 148, 442, 635, 652
BspLI GGNNCC 2 cut(s) 132, 494
BspPI GGATC 2 cut(s) 125, 138
BsrI ACTGG 3 cut(s) 592, 651, 865
BssECI CCNNGG 2 cut(s) 77, 189
BssMI GATC 2 cut(s) 130, 612
BssSI CACGAG 1 cut(s) 342
Bst2BI CACGAG 1 cut(s) 342
Bst2UI CCWGG 2 cut(s) 78, 559
Bst4CI ACNGT 1 cut(s) 359
BstC8I GCNNGC 6 cut(s) 29, 275, 641, 760, 806, 831
BstDEI CTNAG 8 cut(s) 117, 135, 450, 622, 660, 685, 783, 811
BstF5I GGATG 5 cut(s) 199, 233, 555, 586, 727
BstKTI GATC 2 cut(s) 133, 615
BstMBI GATC 2 cut(s) 130, 612
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstNI CCWGG 2 cut(s) 78, 559
BstNSI RCATGY 1 cut(s) 808
BstSCI CCNGG 2 cut(s) 76, 557
BstV1I GCAGC 2 cut(s) 106, 630
BstX2I RGATCY 2 cut(s) 130, 612
BstXI CCANNNNNNTGG 2 cut(s) 503, 562
BstYI RGATCY 2 cut(s) 130, 612
BsuI GTATCC 1 cut(s) 448
BsuRI GGCC 3 cut(s) 150, 591, 762
BtsCI GGATG 5 cut(s) 199, 233, 555, 586, 727
BtsIMutI CAGTG 2 cut(s) 355, 658
Cac8I GCNNGC 6 cut(s) 29, 275, 641, 760, 806, 831
Cfr13I GGNCC 5 cut(s) 148, 257, 493, 590, 618
Csp6I GTAC 1 cut(s) 675
CviAII CATG 5 cut(s) 175, 512, 666, 805, 881
CviQI GTAC 1 cut(s) 675
DdeI CTNAG 8 cut(s) 117, 135, 450, 622, 660, 685, 783, 811
DpnI GATC 2 cut(s) 132, 614
DpnII GATC 2 cut(s) 130, 612
Ecl136II GAGCTC 1 cut(s) 699
Eco24I GRGCYC 1 cut(s) 701
Eco47I GGWCC 3 cut(s) 257, 493, 618
Eco53kI GAGCTC 1 cut(s) 699
Eco88I CYCGRG 1 cut(s) 711
EcoICRI GAGCTC 1 cut(s) 699
EcoRII CCWGG 2 cut(s) 76, 557
EcoT22I ATGCAT 1 cut(s) 727
EcoT38I GRGCYC 1 cut(s) 701
FaeI CATG 5 cut(s) 178, 515, 669, 808, 884
FalI AAGNNNNNCTT 4 cut(s) 216, 248, 747, 779
FaqI GGGAC 2 cut(s) 425, 877
FatI CATG 5 cut(s) 174, 511, 665, 804, 880
FauI CCCGC 1 cut(s) 154
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 4 cut(s) 92, 95, 151, 644
FokI GGATG 5 cut(s) 206, 240, 562, 593, 734
FriOI GRGCYC 1 cut(s) 701
Fsp4HI GCNGC 4 cut(s) 92, 95, 151, 644
FspBI CTAG 2 cut(s) 98, 210
GluI GCNGC 4 cut(s) 92, 95, 151, 644
HaeIII GGCC 3 cut(s) 150, 591, 762
Hin1II CATG 5 cut(s) 178, 515, 669, 808, 884
HinfI GANTC 1 cut(s) 662
HphI GGTGA 7 cut(s) 191, 332, 446, 535, 836, 867, 896
Hpy166II GTNNAC 6 cut(s) 55, 199, 341, 509, 675, 887
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 3 cut(s) 260, 602, 711
Hpy8I GTNNAC 6 cut(s) 55, 199, 341, 509, 675, 887
HpyAV CCTTC 6 cut(s) 218, 248, 263, 453, 629, 773
HpyCH4III ACNGT 1 cut(s) 359
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 4 cut(s) 428, 725, 776, 808
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 8 cut(s) 117, 135, 450, 622, 660, 685, 783, 811
HpySE526I ACGT 1 cut(s) 372
Hsp92II CATG 5 cut(s) 178, 515, 669, 808, 884
Kzo9I GATC 2 cut(s) 130, 612
LmnI GCTCC 1 cut(s) 6
Lsp1109I GCAGC 2 cut(s) 106, 630
LweI GCATC 2 cut(s) 646, 712
MaeI CTAG 2 cut(s) 98, 210
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 4 cut(s) 103, 166, 523, 750
MalI GATC 2 cut(s) 132, 614
MboI GATC 2 cut(s) 130, 612
MboII GAAGA 4 cut(s) 278, 622, 644, 799
MflI RGATCY 2 cut(s) 130, 612
MhlI GDGCHC 1 cut(s) 701
MluCI AATT 4 cut(s) 246, 408, 497, 778
MlyI GAGTC 1 cut(s) 671
MnlI CCTC 8 cut(s) 144, 184, 316, 445, 514, 631, 712, 888
Mph1103I ATGCAT 1 cut(s) 727
MroXI GAANNNNTTC 1 cut(s) 333
MseI TTAA 4 cut(s) 462, 597, 692, 732
MslI CAYNNNNRTG 2 cut(s) 173, 670
MspA1I CMGCKG 1 cut(s) 139
MspR9I CCNGG 2 cut(s) 78, 559
Mva1269I GAATGC 2 cut(s) 725, 796
MvaI CCWGG 2 cut(s) 78, 559
MwoI GCNNNNNNNGC 1 cut(s) 185
NdeII GATC 2 cut(s) 130, 612
NlaIII CATG 5 cut(s) 178, 515, 669, 808, 884
NlaIV GGNNCC 2 cut(s) 132, 494
NmeAIII GCCGAG 1 cut(s) 214
NmuCI GTSAC 2 cut(s) 166, 523
NsiI ATGCAT 1 cut(s) 727
NspI RCATGY 1 cut(s) 808
PaeI GCATGC 1 cut(s) 808
PaeR7I CTCGAG 1 cut(s) 711
PctI GAATGC 2 cut(s) 725, 796
PdmI GAANNNNTTC 1 cut(s) 333
PkrI GCNGC 4 cut(s) 93, 96, 152, 645
PleI GAGTC 1 cut(s) 670
PpsI GAGTC 1 cut(s) 670
Psp124BI GAGCTC 1 cut(s) 701
Psp6I CCWGG 2 cut(s) 76, 557
PspGI CCWGG 2 cut(s) 76, 557
PspN4I GGNNCC 2 cut(s) 132, 494
PspPI GGNCC 5 cut(s) 148, 257, 493, 590, 618
PsuI RGATCY 2 cut(s) 130, 612
PvuII CAGCTG 1 cut(s) 139
RsaI GTAC 1 cut(s) 676
RsaNI GTAC 1 cut(s) 675
RseI CAYNNNNRTG 2 cut(s) 173, 670
SacI GAGCTC 1 cut(s) 701
SaqAI TTAA 4 cut(s) 462, 597, 692, 732
SatI GCNGC 4 cut(s) 92, 95, 151, 644
Sau3AI GATC 2 cut(s) 130, 612
Sau96I GGNCC 5 cut(s) 148, 257, 493, 590, 618
SchI GAGTC 1 cut(s) 671
ScrFI CCNGG 2 cut(s) 78, 559
SduI GDGCHC 1 cut(s) 701
SfaNI GCATC 2 cut(s) 646, 712
Sfr274I CTCGAG 1 cut(s) 711
SinI GGWCC 3 cut(s) 257, 493, 618
SlaI CTCGAG 1 cut(s) 711
SmiMI CAYNNNNRTG 2 cut(s) 173, 670
SmlI CTYRAG 1 cut(s) 711
SmoI CTYRAG 1 cut(s) 711
SphI GCATGC 1 cut(s) 808
Sse9I AATT 4 cut(s) 246, 408, 497, 778
SsiI CCGC 4 cut(s) 4, 92, 151, 161
SspMI CTAG 2 cut(s) 98, 210
SstI GAGCTC 1 cut(s) 701
StyD4I CCNGG 2 cut(s) 76, 557
TaaI ACNGT 1 cut(s) 359
TaiI ACGT 1 cut(s) 375
TaqI TCGA 1 cut(s) 712
TasI AATT 4 cut(s) 246, 408, 497, 778
TauI GCSGC 2 cut(s) 94, 153
Tru1I TTAA 4 cut(s) 462, 597, 692, 732
Tru9I TTAA 4 cut(s) 462, 597, 692, 732
TscAI CASTG 2 cut(s) 362, 658
TseFI GTSAC 2 cut(s) 166, 523
TseI GCWGC 2 cut(s) 94, 643
Tsp45I GTSAC 2 cut(s) 166, 523
TspDTI ATGAA 1 cut(s) 279
TspRI CASTG 2 cut(s) 362, 658
VpaK11BI GGWCC 3 cut(s) 257, 493, 618
XapI RAATTY 2 cut(s) 246, 778
XceI RCATGY 1 cut(s) 808
XcmI CCANNNNNNNNNTGG 1 cut(s) 348
XhoI CTCGAG 1 cut(s) 711
XmiI GTMKAC 1 cut(s) 54
XmnI GAANNNNTTC 1 cut(s) 333
XspI CTAG 2 cut(s) 98, 210
Zsp2I ATGCAT 1 cut(s) 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.