Rmu_sc0031790.1_g000003

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0031790.1
OG0000324
Physical Location & Seq
Forward (+)
14883 .. 17067
2185 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0031790.1_g000003.1.cds

Sequence Viewer

Length: 855 bp
atggcccgggattgctgttcaatatcatcagaatcttatattacagatgaagctcaccaagaagatggtgccagcatgtcagaaccactagcccagcctcattctggagagggagaccaggattgctctacaaaagaggtatctgggtcagctaccgccacaaccacgtcacaacttcaaacaccaaatgcaaatcgagaaaacagaaatggaaaagtatgcaagcatcaggtccatcttccctatcaccaggatatgatgaatcagctaatgactatgcaaaaggaattgaaaaagcagatgacaatgattgttactgtcccaattacaaaggaaggcaaacgattagaggtggctctcggtcggagtatggagaaggctgtaaaggccaataattatgctttgtgggcttggtttcaagaagagaatgcaaagaatgagaaattattaccagatttaccagattgtactcatcagctgttgttcgtgcaatcactccagctatggagaaaacaatacctttggttatatctgattgctctcagactgcagagaggagttggagataaagtagttaatcaattgcaaaaatcagttaactcaaaacttgaagctactgtatccaggcaaatcaaggcgcagtttcaaacgtcgggtaaacaagctcttcaggatgctctcgagtctagcatggaagcttcagtggaagctattagatccgcatcatcagtgactcaaaccctaagtggggaactggctgatagccaacgtaagttagtagctcttgcagctgcactggaaaacccaagtgcggtatatcctgactgttgtttcaccctgtgtaatgcattgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

284

Amino Acids

31.55

Weight (kDa)

6.32

Isoelectric Point (pI)

40.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 68
AciI CCGC 3 cut(s) 156, 720, 812
AclWI GGATC 1 cut(s) 711
AcuI CTGAAG 2 cut(s) 653, 684
AdeI CACNNNGTG 1 cut(s) 840
AfaI GTAC 1 cut(s) 469
AfiI CCNNNNNNNGG 4 cut(s) 104, 747, 748, 811
AgsI TTSAA 6 cut(s) 21, 179, 292, 419, 611, 647
AjiI CACGTC 1 cut(s) 168
AjnI CCWGG 3 cut(s) 117, 249, 623
Alw26I GTCTC 1 cut(s) 108
AlwI GGATC 1 cut(s) 711
Ama87I CYCGRG 2 cut(s) 6, 680
AoxI GGCC 2 cut(s) 3, 387
ApeKI GCWGC 2 cut(s) 788, 791
AspLEI GCGC 1 cut(s) 640
AspS9I GGNCC 2 cut(s) 4, 232
AsuC2I CCSGG 2 cut(s) 7, 8
AsuHPI GGTGA 3 cut(s) 47, 239, 826
AvaI CYCGRG 2 cut(s) 6, 680
AvaII GGWCC 1 cut(s) 232
BanI GGYRCC 1 cut(s) 68
BbvI GCAGC 2 cut(s) 778, 800
BccI CCATC 2 cut(s) 59, 243
BciT130I CCWGG 3 cut(s) 119, 251, 625
BciVI GTATCC 1 cut(s) 631
BcnI CCSGG 2 cut(s) 7, 8
BcoDI GTCTC 1 cut(s) 108
BfaI CTAG 2 cut(s) 89, 687
BfmI CTRYAG 1 cut(s) 548
BfuI GTATCC 1 cut(s) 631
BisI GCNGC 2 cut(s) 789, 792
BlsI GCNGC 2 cut(s) 790, 793
Bme1390I CCNGG 5 cut(s) 7, 8, 119, 251, 625
Bme18I GGWCC 1 cut(s) 232
BmeT110I CYCGRG 2 cut(s) 6, 680
BmgBI CACGTC 1 cut(s) 168
BmgT120I GGNCC 2 cut(s) 4, 232
BmiI GGNNCC 1 cut(s) 70
BmrFI CCNGG 5 cut(s) 7, 8, 119, 251, 625
BmsI GCATC 3 cut(s) 235, 664, 731
BpmI CTGGAG 2 cut(s) 126, 482
BpuMI CCSGG 2 cut(s) 7, 8
BsaBI GATNNNNATC 1 cut(s) 721
BsaI GGTCTC 1 cut(s) 108
BsaJI CCNNGG 1 cut(s) 6
BsaXI ACNNNNNCTCC 2 cut(s) 555, 585
Bsc4I CCNNNNNNNGG 4 cut(s) 104, 747, 748, 811
Bse1I ACTGG 2 cut(s) 759, 801
Bse8I GATNNNNATC 1 cut(s) 721
BseBI CCWGG 3 cut(s) 119, 251, 625
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 1 cut(s) 679
BseJI GATNNNNATC 1 cut(s) 721
BseLI CCNNNNNNNGG 4 cut(s) 104, 747, 748, 811
BseMII CTCAG 1 cut(s) 556
BseNI ACTGG 2 cut(s) 759, 801
BseRI GAGGAG 1 cut(s) 570
BseXI GCAGC 2 cut(s) 778, 800
BseYI CCCAGC 1 cut(s) 93
BsgI GTGCAG 1 cut(s) 777
Bsh1285I CGRYCG 1 cut(s) 364
BshFI GGCC 2 cut(s) 5, 389
BshNI GGYRCC 1 cut(s) 68
BsiEI CGRYCG 1 cut(s) 364
BsiHKCI CYCGRG 2 cut(s) 6, 680
BsiSI CCGG 1 cut(s) 7
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 4 cut(s) 104, 747, 748, 811
BsmAI GTCTC 1 cut(s) 108
BsmFI GGGAC 1 cut(s) 305
BsmI GAATGC 1 cut(s) 433
BsnI GGCC 2 cut(s) 5, 389
Bso31I GGTCTC 1 cut(s) 108
BsoBI CYCGRG 2 cut(s) 6, 680
Bsp143I GATC 1 cut(s) 716
BspACI CCGC 3 cut(s) 156, 720, 812
BspANI GGCC 2 cut(s) 5, 389
BspCNI CTCAG 1 cut(s) 555
BspLI GGNNCC 1 cut(s) 70
BspMAI CTGCAG 1 cut(s) 552
BspPI GGATC 1 cut(s) 711
BspQI GCTCTTC 1 cut(s) 672
BspT107I GGYRCC 1 cut(s) 68
BspTNI GGTCTC 1 cut(s) 108
BsrI ACTGG 2 cut(s) 759, 801
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 1 cut(s) 716
Bst2UI CCWGG 3 cut(s) 119, 251, 625
Bst4CI ACNGT 3 cut(s) 319, 619, 827
Bst6I CTCTTC 2 cut(s) 417, 672
BstC8I GCNNGC 2 cut(s) 73, 224
BstDEI CTNAG 2 cut(s) 542, 743
BstF5I GGATG 1 cut(s) 679
BstHHI GCGC 1 cut(s) 640
BstKTI GATC 1 cut(s) 719
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 1 cut(s) 716
BstMCI CGRYCG 1 cut(s) 364
BstMWI GCNNNNNNNGC 3 cut(s) 386, 407, 788
BstNI CCWGG 3 cut(s) 119, 251, 625
BstNSI RCATGY 1 cut(s) 79
BstSCI CCNGG 5 cut(s) 5, 6, 117, 249, 623
BstSFI CTRYAG 1 cut(s) 548
BstV1I GCAGC 2 cut(s) 778, 800
BstX2I RGATCY 1 cut(s) 716
BstXI CCANNNNNNTGG 1 cut(s) 65
BstYI RGATCY 1 cut(s) 716
BsuI GTATCC 1 cut(s) 631
BsuRI GGCC 2 cut(s) 5, 389
BtrI CACGTC 1 cut(s) 168
BtsCI GGATG 1 cut(s) 679
BtsIMutI CAGTG 3 cut(s) 708, 735, 794
Cac8I GCNNGC 2 cut(s) 73, 224
CfoI GCGC 1 cut(s) 640
Cfr13I GGNCC 2 cut(s) 4, 232
Cfr9I CCCGGG 1 cut(s) 6
Csp6I GTAC 1 cut(s) 468
CviAII CATG 2 cut(s) 76, 691
CviQI GTAC 1 cut(s) 468
DdeI CTNAG 2 cut(s) 542, 743
DpnI GATC 1 cut(s) 718
DpnII GATC 1 cut(s) 716
DraIII CACNNNGTG 1 cut(s) 840
Eam1104I CTCTTC 2 cut(s) 417, 672
EarI CTCTTC 2 cut(s) 417, 672
Eco31I GGTCTC 1 cut(s) 108
Eco47I GGWCC 1 cut(s) 232
Eco57I CTGAAG 2 cut(s) 653, 684
Eco88I CYCGRG 2 cut(s) 6, 680
EcoRII CCWGG 3 cut(s) 117, 249, 623
EcoT22I ATGCAT 1 cut(s) 850
FaeI CATG 2 cut(s) 79, 694
FaqI GGGAC 1 cut(s) 305
FatI CATG 2 cut(s) 75, 690
Fnu4HI GCNGC 2 cut(s) 789, 792
FokI GGATG 1 cut(s) 686
Fsp4HI GCNGC 2 cut(s) 789, 792
FspBI CTAG 2 cut(s) 89, 687
GlaI GCGC 1 cut(s) 639
GluI GCNGC 2 cut(s) 789, 792
GsaI CCCAGC 1 cut(s) 97
GsuI CTGGAG 2 cut(s) 126, 482
HaeIII GGCC 2 cut(s) 5, 389
HapII CCGG 1 cut(s) 7
HhaI GCGC 1 cut(s) 640
Hin1II CATG 2 cut(s) 79, 694
Hin6I GCGC 1 cut(s) 638
HinP1I GCGC 1 cut(s) 638
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
HindIII AAGCTT 1 cut(s) 696
HinfI GANTC 4 cut(s) 32, 262, 683, 733
HpaI GTTAAC 1 cut(s) 598
HpaII CCGG 1 cut(s) 7
HphI GGTGA 3 cut(s) 47, 239, 826
Hpy166II GTNNAC 2 cut(s) 598, 659
Hpy188I TCNGA 5 cut(s) 31, 82, 366, 534, 545
Hpy188III TCNNGA 6 cut(s) 105, 197, 419, 671, 680, 821
Hpy8I GTNNAC 2 cut(s) 598, 659
Hpy99I CGWCG 1 cut(s) 655
HpyAV CCTTC 2 cut(s) 329, 370
HpyCH4III ACNGT 3 cut(s) 319, 619, 827
HpyCH4IV ACGT 3 cut(s) 167, 650, 769
HpyF10VI GCNNNNNNNGC 3 cut(s) 386, 407, 788
HpyF3I CTNAG 2 cut(s) 542, 743
HpySE526I ACGT 3 cut(s) 167, 650, 769
Hsp92II CATG 2 cut(s) 79, 694
HspAI GCGC 1 cut(s) 638
KspAI GTTAAC 1 cut(s) 598
Kzo9I GATC 1 cut(s) 716
LguI GCTCTTC 1 cut(s) 672
Lsp1109I GCAGC 2 cut(s) 778, 800
LweI GCATC 3 cut(s) 235, 664, 731
MaeI CTAG 2 cut(s) 89, 687
MaeII ACGT 3 cut(s) 167, 650, 769
MaeIII GTNAC 3 cut(s) 168, 313, 730
MalI GATC 1 cut(s) 718
MboI GATC 1 cut(s) 716
MboII GAAGA 4 cut(s) 74, 230, 434, 659
MfeI CAATTG 1 cut(s) 581
MflI RGATCY 1 cut(s) 716
MluCI AATT 5 cut(s) 287, 324, 394, 443, 581
MlyI GAGTC 2 cut(s) 692, 727
MmeI TCCRAC 2 cut(s) 344, 541
MnlI CCTC 5 cut(s) 103, 108, 130, 343, 548
Mph1103I ATGCAT 1 cut(s) 850
MseI TTAA 2 cut(s) 576, 597
MspA1I CMGCKG 2 cut(s) 478, 791
MspI CCGG 1 cut(s) 7
MspR9I CCNGG 5 cut(s) 7, 8, 119, 251, 625
MunI CAATTG 1 cut(s) 581
Mva1269I GAATGC 1 cut(s) 433
MvaI CCWGG 3 cut(s) 119, 251, 625
MwoI GCNNNNNNNGC 3 cut(s) 386, 407, 788
NciI CCSGG 2 cut(s) 7, 8
NdeII GATC 1 cut(s) 716
NlaIII CATG 2 cut(s) 79, 694
NlaIV GGNNCC 1 cut(s) 70
NmuCI GTSAC 2 cut(s) 168, 730
NsiI ATGCAT 1 cut(s) 850
NspI RCATGY 1 cut(s) 79
PaeR7I CTCGAG 1 cut(s) 680
PciSI GCTCTTC 1 cut(s) 672
PctI GAATGC 1 cut(s) 433
PfeI GAWTC 2 cut(s) 32, 262
PkrI GCNGC 2 cut(s) 790, 793
PleI GAGTC 2 cut(s) 691, 727
PpsI GAGTC 2 cut(s) 691, 727
Psp6I CCWGG 3 cut(s) 117, 249, 623
PspFI CCCAGC 1 cut(s) 93
PspGI CCWGG 3 cut(s) 117, 249, 623
PspN4I GGNNCC 1 cut(s) 70
PspPI GGNCC 2 cut(s) 4, 232
PstI CTGCAG 1 cut(s) 552
PsuI RGATCY 1 cut(s) 716
PvuII CAGCTG 2 cut(s) 478, 791
RsaI GTAC 1 cut(s) 469
RsaNI GTAC 1 cut(s) 468
SapI GCTCTTC 1 cut(s) 672
SaqAI TTAA 2 cut(s) 576, 597
SatI GCNGC 2 cut(s) 789, 792
Sau3AI GATC 1 cut(s) 716
Sau96I GGNCC 2 cut(s) 4, 232
SchI GAGTC 2 cut(s) 692, 727
ScrFI CCNGG 5 cut(s) 7, 8, 119, 251, 625
SfaNI GCATC 3 cut(s) 235, 664, 731
SfcI CTRYAG 1 cut(s) 548
Sfr274I CTCGAG 1 cut(s) 680
SinI GGWCC 1 cut(s) 232
SlaI CTCGAG 1 cut(s) 680
SmaI CCCGGG 1 cut(s) 8
SmlI CTYRAG 1 cut(s) 680
SmoI CTYRAG 1 cut(s) 680
Sse9I AATT 5 cut(s) 287, 324, 394, 443, 581
SsiI CCGC 3 cut(s) 156, 720, 812
SspMI CTAG 2 cut(s) 89, 687
StyD4I CCNGG 5 cut(s) 5, 6, 117, 249, 623
TaaI ACNGT 3 cut(s) 319, 619, 827
TaiI ACGT 3 cut(s) 170, 653, 772
TaqI TCGA 2 cut(s) 196, 681
TaqII GACCGA 1 cut(s) 350
TasI AATT 5 cut(s) 287, 324, 394, 443, 581
TatI WGTACW 1 cut(s) 467
TfiI GAWTC 2 cut(s) 32, 262
Tru1I TTAA 2 cut(s) 576, 597
Tru9I TTAA 2 cut(s) 576, 597
TscAI CASTG 3 cut(s) 708, 735, 801
TseFI GTSAC 2 cut(s) 168, 730
TseI GCWGC 2 cut(s) 788, 791
Tsp45I GTSAC 2 cut(s) 168, 730
TspDTI ATGAA 2 cut(s) 63, 275
TspMI CCCGGG 1 cut(s) 6
TspRI CASTG 3 cut(s) 708, 735, 801
VpaK11BI GGWCC 1 cut(s) 232
XceI RCATGY 1 cut(s) 79
XcmI CCANNNNNNNNNTGG 1 cut(s) 101
XhoI CTCGAG 1 cut(s) 680
XmaI CCCGGG 1 cut(s) 6
XspI CTAG 2 cut(s) 89, 687
Zsp2I ATGCAT 1 cut(s) 850
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.