Rmu_sc0001942.1_g000022

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001942.1
OG0000324
Physical Location & Seq
Reverse (-)
84480 .. 88565
4086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001942.1_g000022.1.cds

Sequence Viewer

Length: 696 bp
atgcggcagttggcaactgaccttcttgaggaagtaggaattgtggggactatagattttgcagttggaaaggttacaaactctagccaagttggctacatggtgattgctgatctagctgaatttaagatgacagcaaatgtgctagaaggaaggagtggtatgccgattcgaatgctgagcaataagctaccgaaaggcaggcatttgattcgggatagcgtggtttatgatgtgagtgtttggttgccgggggagtttcagccgcagctagaagttacccccatagttaagtatgcttcggatcctcagctcgtgttgggccgccaaattgcggggaataagtcatatatattctatggattgaagcaggggaatattcgggttttgaatatacacactgcatggaaattgttgtttcgagctcatccacaggaggttttggctgttggggttgggaagtgtgttctacgaattgatactactaaagttgcaaagggtgaagtcccttctgctgaggatcctattaagtgtcctgttgcaaagcttattgatgggggcccacttaatcgggaagtgaagatctggtcctcagcgagtgaagaaggctggctgcttcccagtgatatggaagtgtacccagaccttagagttaaagggctctgctcaatctcgacttcaggatgcattctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

231

Amino Acids

25.32

Weight (kDa)

8.29

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 4, 266, 325, 335
AclWI GGATC 4 cut(s) 299, 312, 515, 528
AcsI RAATTY 1 cut(s) 122
AcuI CTGAAG 1 cut(s) 663
AfaI GTAC 1 cut(s) 638
AfiI CCNNNNNNNGG 2 cut(s) 28, 334
AgsI TTSAA 2 cut(s) 367, 391
AluBI AGCT 6 cut(s) 119, 190, 271, 313, 425, 547
AluI AGCT 6 cut(s) 119, 190, 271, 313, 425, 547
Alw21I GWGCWC 1 cut(s) 427
AlwI GGATC 4 cut(s) 299, 312, 515, 528
AoxI GGCC 2 cut(s) 322, 559
ApaI GGGCCC 1 cut(s) 563
ApeKI GCWGC 2 cut(s) 268, 613
ApoI RAATTY 1 cut(s) 122
AspS9I GGNCC 4 cut(s) 322, 559, 560, 588
AsuC2I CCSGG 1 cut(s) 252
AsuHPI GGTGA 2 cut(s) 115, 512
AsuII TTCGAA 1 cut(s) 172
AvaII GGWCC 1 cut(s) 588
BaeGI GKGCMC 1 cut(s) 563
BamHI GGATCC 2 cut(s) 304, 520
BanII GRGCYC 3 cut(s) 427, 563, 663
BauI CACGAG 1 cut(s) 314
Bbv12I GWGCWC 1 cut(s) 427
BbvCI CCTCAGC 3 cut(s) 309, 516, 592
BbvI GCAGC 2 cut(s) 280, 600
BccI CCATC 1 cut(s) 548
BcgI CGANNNNNNTGC 4 cut(s) 157, 191, 194, 228
BcnI CCSGG 1 cut(s) 252
BfaI CTAG 4 cut(s) 84, 116, 146, 272
BfmI CTRYAG 1 cut(s) 51
BglI GCCNNNNNGGC 1 cut(s) 93
BglII AGATCT 1 cut(s) 582
BisI GCNGC 5 cut(s) 5, 266, 269, 325, 614
BlpI GCTNAGC 1 cut(s) 179
BlsI GCNGC 5 cut(s) 6, 267, 270, 326, 615
Bme1390I CCNGG 1 cut(s) 252
Bme18I GGWCC 1 cut(s) 588
BmgT120I GGNCC 4 cut(s) 322, 559, 560, 588
BmiI GGNNCC 4 cut(s) 306, 522, 560, 561
BmrFI CCNGG 1 cut(s) 252
BmrI ACTGGG 1 cut(s) 615
BmsI GCATC 1 cut(s) 674
BmuI ACTGGG 1 cut(s) 615
Bpu10I CCTNAGC 3 cut(s) 309, 516, 592
Bpu1102I GCTNAGC 1 cut(s) 179
Bpu14I TTCGAA 1 cut(s) 172
BpuEI CTTGAG 1 cut(s) 47
BpuMI CCSGG 1 cut(s) 252
BsaJI CCNNGG 1 cut(s) 251
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 334
Bse1I ACTGG 1 cut(s) 621
BseDI CCNNGG 1 cut(s) 251
BseGI GGATG 2 cut(s) 427, 689
BseLI CCNNNNNNNGG 2 cut(s) 28, 334
BseMII CTCAG 4 cut(s) 170, 323, 507, 606
BseNI ACTGG 1 cut(s) 621
BseSI GKGCMC 1 cut(s) 563
BseXI GCAGC 2 cut(s) 280, 600
BshFI GGCC 2 cut(s) 324, 561
BsiHKAI GWGCWC 1 cut(s) 427
BsiSI CCGG 1 cut(s) 251
BslFI GGGAC 2 cut(s) 61, 491
BslI CCNNNNNNNGG 2 cut(s) 28, 334
BsmFI GGGAC 2 cut(s) 61, 491
BsmI GAATGC 2 cut(s) 180, 687
BsnI GGCC 2 cut(s) 324, 561
Bsp119I TTCGAA 1 cut(s) 172
Bsp120I GGGCCC 1 cut(s) 559
Bsp1286I GDGCHC 3 cut(s) 427, 563, 663
Bsp143I GATC 4 cut(s) 112, 304, 520, 582
Bsp1720I GCTNAGC 1 cut(s) 179
BspACI CCGC 4 cut(s) 4, 266, 325, 335
BspANI GGCC 2 cut(s) 324, 561
BspCNI CTCAG 4 cut(s) 171, 322, 508, 605
BspLI GGNNCC 4 cut(s) 306, 522, 560, 561
BspPI GGATC 4 cut(s) 299, 312, 515, 528
BspT104I TTCGAA 1 cut(s) 172
BsrI ACTGG 1 cut(s) 621
BssECI CCNNGG 1 cut(s) 251
BssMI GATC 4 cut(s) 112, 304, 520, 582
BssSI CACGAG 1 cut(s) 314
Bst2BI CACGAG 1 cut(s) 314
BstBI TTCGAA 1 cut(s) 172
BstC8I GCNNGC 2 cut(s) 203, 611
BstDEI CTNAG 5 cut(s) 179, 309, 516, 592, 647
BstENI CCTNNNNNAGG 1 cut(s) 26
BstF5I GGATG 2 cut(s) 427, 689
BstKTI GATC 4 cut(s) 115, 307, 523, 585
BstMBI GATC 4 cut(s) 112, 304, 520, 582
BstMWI GCNNNNNNNGC 2 cut(s) 93, 116
BstSCI CCNGG 1 cut(s) 250
BstSFI CTRYAG 1 cut(s) 51
BstSLI GKGCMC 1 cut(s) 563
BstV1I GCAGC 2 cut(s) 280, 600
BstX2I RGATCY 3 cut(s) 304, 520, 582
BstXI CCANNNNNNTGG 1 cut(s) 628
BstYI RGATCY 3 cut(s) 304, 520, 582
BsuRI GGCC 2 cut(s) 324, 561
BtsCI GGATG 2 cut(s) 427, 689
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 2 cut(s) 399, 628
Cac8I GCNNGC 2 cut(s) 203, 611
Cfr13I GGNCC 4 cut(s) 322, 559, 560, 588
Csp6I GTAC 1 cut(s) 637
CviAII CATG 2 cut(s) 100, 405
CviQI GTAC 1 cut(s) 637
DdeI CTNAG 5 cut(s) 179, 309, 516, 592, 647
DpnI GATC 4 cut(s) 114, 306, 522, 584
DpnII GATC 4 cut(s) 112, 304, 520, 582
Ecl136II GAGCTC 1 cut(s) 425
Eco24I GRGCYC 3 cut(s) 427, 563, 663
Eco47I GGWCC 1 cut(s) 588
Eco53kI GAGCTC 1 cut(s) 425
Eco57I CTGAAG 1 cut(s) 663
EcoICRI GAGCTC 1 cut(s) 425
EcoNI CCTNNNNNAGG 1 cut(s) 26
EcoO109I RGGNCCY 1 cut(s) 559
EcoT22I ATGCAT 1 cut(s) 689
EcoT38I GRGCYC 3 cut(s) 427, 563, 663
FaeI CATG 2 cut(s) 103, 408
FaqI GGGAC 2 cut(s) 61, 491
FatI CATG 2 cut(s) 99, 404
FauI CCCGC 1 cut(s) 328
Fnu4HI GCNGC 5 cut(s) 5, 266, 269, 325, 614
FokI GGATG 1 cut(s) 414
FriOI GRGCYC 3 cut(s) 427, 563, 663
Fsp4HI GCNGC 5 cut(s) 5, 266, 269, 325, 614
FspBI CTAG 4 cut(s) 84, 116, 146, 272
GluI GCNGC 5 cut(s) 5, 266, 269, 325, 614
HaeIII GGCC 2 cut(s) 324, 561
HapII CCGG 1 cut(s) 251
Hin1II CATG 2 cut(s) 103, 408
HindIII AAGCTT 1 cut(s) 545
HinfI GANTC 2 cut(s) 169, 211
HpaII CCGG 1 cut(s) 251
HphI GGTGA 2 cut(s) 115, 512
Hpy166II GTNNAC 1 cut(s) 637
Hpy188I TCNGA 1 cut(s) 304
Hpy188III TCNNGA 5 cut(s) 26, 215, 572, 673, 681
Hpy8I GTNNAC 1 cut(s) 637
HpyAV CCTTC 5 cut(s) 32, 143, 147, 519, 599
HpyCH4V TGCA 5 cut(s) 62, 404, 494, 542, 687
HpyF10VI GCNNNNNNNGC 2 cut(s) 93, 116
HpyF3I CTNAG 5 cut(s) 179, 309, 516, 592, 647
Hsp92II CATG 2 cut(s) 103, 408
Kzo9I GATC 4 cut(s) 112, 304, 520, 582
Lsp1109I GCAGC 2 cut(s) 280, 600
LweI GCATC 1 cut(s) 674
MaeI CTAG 4 cut(s) 84, 116, 146, 272
MaeIII GTNAC 2 cut(s) 73, 277
MalI GATC 4 cut(s) 114, 306, 522, 584
MboI GATC 4 cut(s) 112, 304, 520, 582
MboII GAAGA 2 cut(s) 592, 614
MflI RGATCY 3 cut(s) 304, 520, 582
MhlI GDGCHC 3 cut(s) 427, 563, 663
MluCI AATT 5 cut(s) 39, 122, 330, 410, 474
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 5 cut(s) 22, 318, 430, 511, 601
Mph1103I ATGCAT 1 cut(s) 689
MseI TTAA 6 cut(s) 126, 291, 528, 567, 654, 694
MspI CCGG 1 cut(s) 251
MspR9I CCNGG 1 cut(s) 252
Mva1269I GAATGC 2 cut(s) 180, 687
MwoI GCNNNNNNNGC 2 cut(s) 93, 116
NciI CCSGG 1 cut(s) 252
NdeII GATC 4 cut(s) 112, 304, 520, 582
NlaIII CATG 2 cut(s) 103, 408
NlaIV GGNNCC 4 cut(s) 306, 522, 560, 561
NsiI ATGCAT 1 cut(s) 689
NspV TTCGAA 1 cut(s) 172
PctI GAATGC 2 cut(s) 180, 687
PfeI GAWTC 2 cut(s) 169, 211
PkrI GCNGC 5 cut(s) 6, 267, 270, 326, 615
Psp124BI GAGCTC 1 cut(s) 427
PspN4I GGNNCC 4 cut(s) 306, 522, 560, 561
PspOMI GGGCCC 1 cut(s) 559
PspPI GGNCC 4 cut(s) 322, 559, 560, 588
PsuI RGATCY 3 cut(s) 304, 520, 582
RsaI GTAC 1 cut(s) 638
RsaNI GTAC 1 cut(s) 637
SacI GAGCTC 1 cut(s) 427
SaqAI TTAA 6 cut(s) 126, 291, 528, 567, 654, 694
SatI GCNGC 5 cut(s) 5, 266, 269, 325, 614
Sau3AI GATC 4 cut(s) 112, 304, 520, 582
Sau96I GGNCC 4 cut(s) 322, 559, 560, 588
ScrFI CCNGG 1 cut(s) 252
SduI GDGCHC 3 cut(s) 427, 563, 663
SfaNI GCATC 1 cut(s) 674
SfcI CTRYAG 1 cut(s) 51
SfuI TTCGAA 1 cut(s) 172
SinI GGWCC 1 cut(s) 588
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
Sse9I AATT 5 cut(s) 39, 122, 330, 410, 474
SsiI CCGC 4 cut(s) 4, 266, 325, 335
SspI AATATT 1 cut(s) 379
SspMI CTAG 4 cut(s) 84, 116, 146, 272
SstI GAGCTC 1 cut(s) 427
StyD4I CCNGG 1 cut(s) 250
TaqI TCGA 3 cut(s) 172, 421, 674
TasI AATT 5 cut(s) 39, 122, 330, 410, 474
TauI GCSGC 3 cut(s) 7, 268, 327
TfiI GAWTC 2 cut(s) 169, 211
Tru1I TTAA 6 cut(s) 126, 291, 528, 567, 654, 694
Tru9I TTAA 6 cut(s) 126, 291, 528, 567, 654, 694
TscAI CASTG 2 cut(s) 406, 628
TseI GCWGC 2 cut(s) 268, 613
TspRI CASTG 2 cut(s) 406, 628
VpaK11BI GGWCC 1 cut(s) 588
XagI CCTNNNNNAGG 1 cut(s) 26
XapI RAATTY 1 cut(s) 122
XspI CTAG 4 cut(s) 84, 116, 146, 272
Zsp2I ATGCAT 1 cut(s) 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.