RLG00000009998

Enhancer of mRNA-decapping protein 4-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
61585594 .. 61590955
5362 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009998

Sequence Viewer

Length: 957 bp
ATGGCCAGGCAGGATATGATGAATCAGCTAATGACTATGCAAAAAGAATTGCAAAAGCAGATGACAATGATGGTTACCGTCCCAGTTACAAAGGAAGGCAAACGATTAGAGGCGGCTCTCGGTCGGATGAATGCAAAGAATGAGAAATTATTGCGAGGCCGTACTCAGCAAGTAACTGGTTTGATTGTGAACAAGGACTTTCCAGTCATGTTAGAGAAAATGGTAAAAGAAGAAACAGCTGCTGTTGGACAAGCTGTTGTTCGTGCAATCACTCCAGATATGGAGAAAACAATAACTTCGGCTATATCTGATTGCTTTCAGAGAGGAGTGGGAGATAAGGCAGTTAATCAATTGGAAAAATCAGTTAACTCAAAACTTGATGCTACTGTATCCAGGCAAATCAAGGTGCAGTTTCAAACATCAGGTAAACAAGCTCTTCAAGATGCTCTCAAGTCTAGCATGGAAGCTTCAGTGGTACCTGCCTTTGAGACGTCATGTAAATCCATGTTTGAGCAAGTAGATGCCACATTCCAGAAAGGAATGGTTGAACATGCAACTGTGGCTCAGCAGCAATTTGAGTCTGCACATTCGCCGTTGGCCCATGCTGAATCTATTAGCTTCGCATCATCAGAGACTCAAACCCTAAGCGGTGAACTGGCTTATGGTCAACGTAAGGGTTCAGCTCCATGGGTCGCTTGTGAAGATGAGTTTGGAGGAACACTTGTTTATTGGGAACTGGATCATGCCCGGAAGGTGTTTGATGAAATGCTTGAGAGAAATACTGTGTCGTGGACTAGTTCGATTTCTGCTTTTGGTGACTATGCTTTAGTTGACATGTTTGCTAGATGTGGTAACCTTCAAAGTGCAATGAAGGTGTTCGATAACATGGCAAGAAGAGATGTTTCTGCTTGGACAGCAGCCATTGGAGCAATGACCATGCAAGGAAATGGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

319

Amino Acids

35.07

Weight (kDa)

5.94

Isoelectric Point (pI)

28.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 203
AatII GACGTC 1 cut(s) 494
Acc36I ACCTGC 1 cut(s) 487
Acc65I GGTACC 1 cut(s) 475
AccB1I GGYRCC 1 cut(s) 475
AciI CCGC 2 cut(s) 113, 648
AclWI GGATC 1 cut(s) 747
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 453
AcyI GRCGYC 1 cut(s) 491
AfaI GTAC 2 cut(s) 163, 477
AflIII ACRYGT 1 cut(s) 834
AgsI TTSAA 4 cut(s) 416, 440, 548, 860
AhlI ACTAGT 1 cut(s) 794
AjnI CCWGG 2 cut(s) 5, 392
AjuI GAANNNNNNNTTGG 2 cut(s) 693, 725
AluBI AGCT 7 cut(s) 28, 239, 254, 434, 467, 618, 683
AluI AGCT 7 cut(s) 28, 239, 254, 434, 467, 618, 683
Alw26I GTCTC 2 cut(s) 482, 626
AlwI GGATC 1 cut(s) 747
AlwNI CAGNNNCTG 1 cut(s) 242
AoxI GGCC 3 cut(s) 3, 157, 597
ApeKI GCWGC 3 cut(s) 239, 568, 917
Asp700I GAANNNNTTC 1 cut(s) 875
Asp718I GGTACC 1 cut(s) 475
AspS9I GGNCC 1 cut(s) 598
AsuC2I CCSGG 1 cut(s) 748
AsuHPI GGTGA 2 cut(s) 662, 827
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 475
BbvI GCAGC 3 cut(s) 226, 580, 929
BccI CCATC 1 cut(s) 64
BceAI ACGGC 2 cut(s) 144, 577
BciT130I CCWGG 2 cut(s) 7, 394
BciVI GTATCC 1 cut(s) 400
BcnI CCSGG 1 cut(s) 748
BcoDI GTCTC 2 cut(s) 482, 626
BcuI ACTAGT 1 cut(s) 794
BfaI CTAG 3 cut(s) 456, 795, 843
BfuAI ACCTGC 1 cut(s) 487
BfuI GTATCC 1 cut(s) 400
BisI GCNGC 4 cut(s) 114, 240, 569, 918
BlpI GCTNAGC 1 cut(s) 564
BlsI GCNGC 4 cut(s) 115, 241, 570, 919
Bme1390I CCNGG 3 cut(s) 7, 394, 748
BmgT120I GGNCC 1 cut(s) 598
BmiI GGNNCC 1 cut(s) 477
BmrFI CCNGG 3 cut(s) 7, 394, 748
BmrI ACTGGG 1 cut(s) 77
BmsI GCATC 4 cut(s) 370, 433, 511, 632
BmuI ACTGGG 1 cut(s) 77
BpmI CTGGAG 1 cut(s) 258
Bpu10I CCTNAGC 1 cut(s) 644
Bpu1102I GCTNAGC 1 cut(s) 564
BpuEI CTTGAG 2 cut(s) 434, 791
BpuMI CCSGG 1 cut(s) 748
BsaHI GRCGYC 1 cut(s) 491
BsaJI CCNNGG 1 cut(s) 686
Bse1I ACTGG 5 cut(s) 83, 181, 203, 660, 741
Bse3DI GCAATG 2 cut(s) 873, 936
BseBI CCWGG 2 cut(s) 7, 394
BseDI CCNNGG 1 cut(s) 686
BseGI GGATG 1 cut(s) 132
BseMI GCAATG 2 cut(s) 873, 936
BseMII CTCAG 2 cut(s) 179, 578
BseNI ACTGG 5 cut(s) 83, 181, 203, 660, 741
BseRI GAGGAG 1 cut(s) 339
BseXI GCAGC 3 cut(s) 226, 580, 929
BsgI GTGCAG 2 cut(s) 428, 567
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 3 cut(s) 5, 159, 599
BshNI GGYRCC 1 cut(s) 475
BsiEI CGRYCG 1 cut(s) 124
BsiSI CCGG 1 cut(s) 748
BslFI GGGAC 1 cut(s) 65
BsmAI GTCTC 2 cut(s) 482, 626
BsmBI CGTCTC 1 cut(s) 482
BsmFI GGGAC 1 cut(s) 65
BsmI GAATGC 1 cut(s) 136
BsnI GGCC 3 cut(s) 5, 159, 599
Bsp143I GATC 1 cut(s) 739
Bsp1720I GCTNAGC 1 cut(s) 564
Bsp19I CCATGG 1 cut(s) 686
BspACI CCGC 2 cut(s) 113, 648
BspANI GGCC 3 cut(s) 5, 159, 599
BspCNI CTCAG 2 cut(s) 178, 577
BspLI GGNNCC 1 cut(s) 477
BspMI ACCTGC 1 cut(s) 487
BspPI GGATC 1 cut(s) 747
BspQI GCTCTTC 1 cut(s) 441
BspT107I GGYRCC 1 cut(s) 475
BsrDI GCAATG 2 cut(s) 873, 936
BsrI ACTGG 5 cut(s) 83, 181, 203, 660, 741
BssECI CCNNGG 1 cut(s) 686
BssMI GATC 1 cut(s) 739
BssNI GRCGYC 1 cut(s) 491
BssT1I CCWWGG 1 cut(s) 686
Bst2UI CCWGG 2 cut(s) 7, 394
Bst4CI ACNGT 4 cut(s) 79, 388, 559, 784
Bst6I CTCTTC 2 cut(s) 441, 889
BstACI GRCGYC 1 cut(s) 491
BstDEI CTNAG 3 cut(s) 165, 564, 644
BstDSI CCRYGG 1 cut(s) 686
BstEII GGTNACC 2 cut(s) 73, 851
BstF5I GGATG 1 cut(s) 132
BstKTI GATC 1 cut(s) 742
BstMAI GTCTC 2 cut(s) 482, 626
BstMBI GATC 1 cut(s) 739
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 3 cut(s) 560, 914, 926
BstNI CCWGG 2 cut(s) 7, 394
BstNSI RCATGY 2 cut(s) 554, 838
BstPI GGTNACC 2 cut(s) 73, 851
BstSCI CCNGG 3 cut(s) 5, 392, 746
BstV1I GCAGC 3 cut(s) 226, 580, 929
BsuI GTATCC 1 cut(s) 400
BsuRI GGCC 3 cut(s) 5, 159, 599
BtgI CCRYGG 1 cut(s) 686
BtsCI GGATG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 477
BveI ACCTGC 1 cut(s) 487
CaiI CAGNNNCTG 1 cut(s) 242
Cfr13I GGNCC 1 cut(s) 598
Csp6I GTAC 2 cut(s) 162, 476
CviQI GTAC 2 cut(s) 162, 476
DdeI CTNAG 3 cut(s) 165, 564, 644
DpnI GATC 1 cut(s) 741
DpnII GATC 1 cut(s) 739
DrdI GACNNNNNNGTC 1 cut(s) 203
DseDI GACNNNNNNGTC 1 cut(s) 203
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 441, 889
EarI CTCTTC 2 cut(s) 441, 889
Eco130I CCWWGG 1 cut(s) 686
Eco57I CTGAAG 1 cut(s) 453
Eco91I GGTNACC 2 cut(s) 73, 851
EcoO65I GGTNACC 2 cut(s) 73, 851
EcoRII CCWGG 2 cut(s) 5, 392
EcoT14I CCWWGG 1 cut(s) 686
ErhI CCWWGG 1 cut(s) 686
Esp3I CGTCTC 1 cut(s) 482
FaqI GGGAC 1 cut(s) 65
Fnu4HI GCNGC 4 cut(s) 114, 240, 569, 918
FokI GGATG 1 cut(s) 139
Fsp4HI GCNGC 4 cut(s) 114, 240, 569, 918
FspBI CTAG 3 cut(s) 456, 795, 843
GluI GCNGC 4 cut(s) 114, 240, 569, 918
GsuI CTGGAG 1 cut(s) 258
HaeIII GGCC 3 cut(s) 5, 159, 599
HapII CCGG 1 cut(s) 748
Hin1I GRCGYC 1 cut(s) 491
HincII GTYRAC 3 cut(s) 367, 668, 832
HindII GTYRAC 3 cut(s) 367, 668, 832
HindIII AAGCTT 1 cut(s) 465
HinfI GANTC 4 cut(s) 22, 578, 608, 634
HpaI GTTAAC 1 cut(s) 367
HpaII CCGG 1 cut(s) 748
HphI GGTGA 2 cut(s) 662, 827
Hpy166II GTNNAC 7 cut(s) 190, 367, 428, 653, 668, 792, 832
Hpy188I TCNGA 4 cut(s) 126, 310, 321, 631
Hpy188III TCNNGA 3 cut(s) 275, 440, 532
Hpy8I GTNNAC 7 cut(s) 190, 367, 428, 653, 668, 792, 832
HpyAV CCTTC 4 cut(s) 89, 745, 865, 866
HpyCH4III ACNGT 4 cut(s) 79, 388, 559, 784
HpyCH4IV ACGT 2 cut(s) 491, 670
HpyCH4V TGCA 9 cut(s) 40, 52, 134, 266, 409, 554, 584, 866, 940
HpyF10VI GCNNNNNNNGC 3 cut(s) 560, 914, 926
HpyF3I CTNAG 3 cut(s) 165, 564, 644
HpySE526I ACGT 2 cut(s) 491, 670
Hsp92I GRCGYC 1 cut(s) 491
KpnI GGTACC 1 cut(s) 479
KspAI GTTAAC 1 cut(s) 367
Kzo9I GATC 1 cut(s) 739
LguI GCTCTTC 1 cut(s) 441
LmnI GCTCC 2 cut(s) 688, 926
Lsp1109I GCAGC 3 cut(s) 226, 580, 929
LweI GCATC 4 cut(s) 370, 433, 511, 632
MaeI CTAG 3 cut(s) 456, 795, 843
MaeII ACGT 2 cut(s) 491, 670
MaeIII GTNAC 5 cut(s) 73, 85, 172, 815, 851
MalI GATC 1 cut(s) 741
MboI GATC 1 cut(s) 739
MboII GAAGA 4 cut(s) 242, 428, 713, 906
MfeI CAATTG 1 cut(s) 350
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 47, 146, 350, 572
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 587, 628
MmeI TCCRAC 2 cut(s) 104, 226
MnlI CCTC 4 cut(s) 103, 149, 317, 707
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 875
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 345, 366
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 1 cut(s) 748
MspR9I CCNGG 3 cut(s) 7, 394, 748
MunI CAATTG 1 cut(s) 350
Mva1269I GAATGC 1 cut(s) 136
MvaI CCWGG 2 cut(s) 7, 394
MwoI GCNNNNNNNGC 3 cut(s) 560, 914, 926
NciI CCSGG 1 cut(s) 748
NcoI CCATGG 1 cut(s) 686
NdeII GATC 1 cut(s) 739
NlaIV GGNNCC 1 cut(s) 477
NmuCI GTSAC 1 cut(s) 815
NspI RCATGY 2 cut(s) 554, 838
PciI ACATGT 1 cut(s) 834
PciSI GCTCTTC 1 cut(s) 441
PctI GAATGC 1 cut(s) 136
PdmI GAANNNNTTC 1 cut(s) 875
PfeI GAWTC 2 cut(s) 22, 608
PkrI GCNGC 4 cut(s) 115, 241, 570, 919
PleI GAGTC 2 cut(s) 586, 628
PpsI GAGTC 2 cut(s) 586, 628
PscI ACATGT 1 cut(s) 834
Psp6I CCWGG 2 cut(s) 5, 392
PspEI GGTNACC 2 cut(s) 73, 851
PspGI CCWGG 2 cut(s) 5, 392
PspN4I GGNNCC 1 cut(s) 477
PspPI GGNCC 1 cut(s) 598
PstNI CAGNNNCTG 1 cut(s) 242
PvuII CAGCTG 1 cut(s) 239
RsaI GTAC 2 cut(s) 163, 477
RsaNI GTAC 2 cut(s) 162, 476
SapI GCTCTTC 1 cut(s) 441
SaqAI TTAA 2 cut(s) 345, 366
SatI GCNGC 4 cut(s) 114, 240, 569, 918
Sau3AI GATC 1 cut(s) 739
Sau96I GGNCC 1 cut(s) 598
SchI GAGTC 2 cut(s) 587, 628
ScrFI CCNGG 3 cut(s) 7, 394, 748
SfaNI GCATC 4 cut(s) 370, 433, 511, 632
SmlI CTYRAG 2 cut(s) 449, 770
SmoI CTYRAG 2 cut(s) 449, 770
SpeI ACTAGT 1 cut(s) 794
Sse9I AATT 4 cut(s) 47, 146, 350, 572
SsiI CCGC 2 cut(s) 113, 648
SspMI CTAG 3 cut(s) 456, 795, 843
StyD4I CCNGG 3 cut(s) 5, 392, 746
StyI CCWWGG 1 cut(s) 686
TaaI ACNGT 4 cut(s) 79, 388, 559, 784
TaiI ACGT 2 cut(s) 494, 673
TaqI TCGA 2 cut(s) 800, 879
TaqII GACCGA 1 cut(s) 110
TasI AATT 4 cut(s) 47, 146, 350, 572
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 2 cut(s) 22, 608
Tru1I TTAA 2 cut(s) 345, 366
Tru9I TTAA 2 cut(s) 345, 366
TscAI CASTG 1 cut(s) 477
TseFI GTSAC 1 cut(s) 815
TseI GCWGC 3 cut(s) 239, 568, 917
Tsp45I GTSAC 1 cut(s) 815
TspDTI ATGAA 4 cut(s) 35, 143, 777, 884
TspRI CASTG 1 cut(s) 477
XceI RCATGY 2 cut(s) 554, 838
XmnI GAANNNNTTC 1 cut(s) 875
XspI CTAG 3 cut(s) 456, 795, 843
ZraI GACGTC 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.