Rmu_ssc0000211.1_g000001

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000211.1
OG0000324
Physical Location & Seq
Reverse (-)
4327 .. 11606
7280 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000211.1_g000001.1.cds

Sequence Viewer

Length: 2856 bp
atgccgagcaatgagctatggaaaggcaggcatttgattggggatagcgtggttcatgatgtgggtgtttggttgcccggggagtttcagccacagctagaagttacccccataactaagtatggttcggatcctcagctggtgttgggacgccaaacttctgtttggattagcaagatgcagttagggcttttgctttatctcgtgtatacgcctactagagtggtttttgtgaagttggattacttgccgatgattattttatcttgttggcctaagcgatgtcttgttctgtcagagggtcacatacatgatttctttgccgaggatgttcaccctttggcaagtgtgaatggaggaggatggctttttgtgtggaaaatttctgaaggtccagatgaaggagcaaagggtgaagtcccttctgctgaggttcctattaagtgtcccgttgaaaagctcattgatggggtccaatttgttggtaaacatgatggagaggtgacagatttatcaacgtgccaatggatgaccacccggctggtttctgcttctatggatggaactatcttggaagatcgcaagtcgcaaccacttttagtactgagaccctatgatggccttcctgtttattcatctacatttgtgacagctcccgacaggcctgatcacatcatacttataacattggaccagatctggtcctcagcgagtgaaggatggctacttcccagtgatgctgagtcatggaaatgtacccagaccttagagttaaagggctcagctcaacctcgagttgaggatgcattctttaatcaagtcatagcattgtcacaagctggccttcttttagttgcaaatgctaagaagaatgctctacatgccgtgcacttagaccttggtggtgagccagcatctacatgcatggattacatagcagaatttacagttgcaatgcttagtttgagctttactgggacaagtatatcacctgatggtgaacaaatttattgtgtccaaacacaagccattcaacagtatggtttggacttatccaagtgcttacctcccctattggagaattcaggtttagaaaagttcttttgtttccaggcatccgatgttggatttgagatggtccgggattgctgtgcaatatcattagaatcttatagtacagatgaagctcggcaaggtgattgttccagcatgtcagaatcactagctcagcctcattctggagaggaggaccacgatcgctctacaaaagatgtatctgggtcagctaccgccacaaccgcatcacaactacaaacaccaaatgcaaagtcgagaaaacagaaagggaaaaatatgcaagcatcaggtcaatcttccccatcccctggtgtgctcaactcaatagagccctctaatgaagcaggtgggacttcaagtcccccctccggagaagctgcatttcctcaaattatggccaggcaggataagatgaatcagggaactaatgactatgcaaaaagaattgcaaaagcagatgacaatgatggttaccgtcccaattacaaaggaaggcaacgattagaggtggctgtcggtcggagtatggggaaggctgtaaaggccaataatttggtttgtgggcttgtcatgttagagaaaatggtaaaagaagaaacagctgctgttggacaagctgttgttcgtgcaatcactccagctatggagcaaacaataacttcagctatatctgactactttcagagaggagtgggagataaagcagttaatcaattggaaaaatcagttgactcaaaacttgaagctactgtatccaggcaaatcaaggtgcagtttcaaacatcgggtaaagaagctcttcaagatgctctcaagtctagcatggaagcttcagtggtacctgcctttgagacgtcatgtaaatccatgtttgagcaagtagatgccacattccagaaaggaatggttgaacatgcaactgtggctcagcagcaatttgagtctgcacattcgccgttggcccatgctgaagctattagcttcgcatcatcagagactcaaaccctaagcggtgaactggctaatggtcaactcagcattcagatcataatggggcagtctatctggactgttaatgcattagaatctgacaccttgttactcccatgcattgccatgggctcagctccatgggtggcttcggaagatgggtttggaggaacccgtgtttattgggaactggatcatgcccggaaggtgtttgatgaaatgcttgagagaaatactgtgtcgtggactagttcgatttgtgcttatggtgactatgggcctaagacccgacaaggttaccattttgtctgccatcacagctttcgcacaactaagcgattctctcactggaaagtattgcatgtttatgttttaaggaatggactggaaggttgtaatacgatttgcaatgctatgattgacatgtacatgaactgcggcaaacaagagatggcctgcagagtttttgacaatatgtcgaataggactgtagtatcatggaactcattgatttctggtttcataagaaatggtcatgtgaagtcagctttgaaatgttcagtgagatgccaaagagtgatcttgtctcttggaacactaattggtgctctgttccaagaaagcaagtttggggaagcaattgaacttttcagggtgatgcagactgagggaataaaaggagatagggtgaccatggtggaggctgcatctgcctgcggatatctaggagctcttgatcttgcaaagtggattcatgcttacatcgaaaaaaaaaaaaaacgaaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

951

Amino Acids

104.29

Weight (kDa)

5.73

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 683
AarI CACCTGC 1 cut(s) 1412
AatII GACGTC 1 cut(s) 1934
Acc36I ACCTGC 2 cut(s) 1412, 1927
Acc65I GGTACC 1 cut(s) 1915
AccB1I GGYRCC 1 cut(s) 1915
AccB7I CCANNNNNTGG 1 cut(s) 1385
AccI GTMKAC 1 cut(s) 209
AccIII TCCGGA 1 cut(s) 1445
AciI CCGC 5 cut(s) 1290, 1299, 2088, 2505, 2784
AclWI GGATC 3 cut(s) 125, 138, 2268
AcoI YGGCCR 1 cut(s) 1473
AcsI RAATTY 4 cut(s) 381, 941, 1005, 1081
AcuI CTGAAG 4 cut(s) 408, 1722, 1893, 2067
AcyI GRCGYC 2 cut(s) 151, 1931
AfaI GTAC 5 cut(s) 603, 757, 1177, 1917, 2495
AfiI CCNNNNNNNGG 5 cut(s) 401, 617, 1238, 1385, 1445
AflIII ACRYGT 1 cut(s) 2490
AgsI TTSAA 9 cut(s) 455, 1034, 1434, 1820, 1856, 1880, 1988, 2620, 2711
AhdI GACNNNNNGTC 2 cut(s) 1434, 2542
AhlI ACTAGT 1 cut(s) 2315
AjnI CCWGG 4 cut(s) 1110, 1384, 1475, 1832
AjuI GAANNNNNNNTTGG 4 cut(s) 2214, 2246, 2679, 2711
Alw21I GWGCWC 4 cut(s) 891, 1395, 2677, 2800
Alw26I GTCTC 4 cut(s) 601, 1922, 2066, 2658
Alw44I GTGCAC 1 cut(s) 887
AlwI GGATC 3 cut(s) 125, 138, 2268
AlwNI CAGNNNCTG 1 cut(s) 1682
Ama87I CYCGRG 2 cut(s) 77, 792
Aor13HI TCCGGA 1 cut(s) 1445
AoxI GGCC 9 cut(s) 272, 619, 662, 841, 1473, 1620, 2037, 2345, 2520
ApaLI GTGCAC 1 cut(s) 887
ApeKI GCWGC 4 cut(s) 1454, 1679, 2008, 2771
ApoI RAATTY 4 cut(s) 381, 941, 1005, 1081
ArsI GACNNNNNNTTYG 2 cut(s) 1313, 1345
Asp700I GAANNNNTTC 1 cut(s) 1875
Asp718I GGTACC 1 cut(s) 1915
AspS9I GGNCC 8 cut(s) 392, 472, 691, 702, 1138, 1249, 2038, 2345
AsuC2I CCSGG 5 cut(s) 78, 79, 538, 1142, 2269
AvaI CYCGRG 2 cut(s) 77, 792
AvaII GGWCC 6 cut(s) 392, 472, 691, 702, 1138, 1249
BaeGI GKGCMC 1 cut(s) 891
BaeI ACNNNNGTAYC 2 cut(s) 2544, 2577
BalI TGGCCA 1 cut(s) 1475
BamHI GGATCC 1 cut(s) 130
BanI GGYRCC 1 cut(s) 1915
BanII GRGCYC 4 cut(s) 782, 1410, 2201, 2800
BarI GAAGNNNNNNTAC 4 cut(s) 227, 259, 708, 740
BauI CACGAG 1 cut(s) 203
Bbv12I GWGCWC 4 cut(s) 891, 1395, 2677, 2800
BbvCI CCTCAGC 3 cut(s) 135, 429, 706
BbvI GCAGC 4 cut(s) 1441, 1666, 2020, 2758
BceAI ACGGC 2 cut(s) 869, 2017
BciT130I CCWGG 4 cut(s) 1112, 1386, 1477, 1834
BciVI GTATCC 1 cut(s) 1840
BclI TGATCA 1 cut(s) 667
BcnI CCSGG 5 cut(s) 78, 79, 538, 1142, 2269
BcoDI GTCTC 4 cut(s) 601, 1922, 2066, 2658
BcuI ACTAGT 1 cut(s) 2315
BfaI CTAG 6 cut(s) 98, 219, 1223, 1896, 2316, 2792
BfmI CTRYAG 2 cut(s) 2524, 2556
BfuAI ACCTGC 2 cut(s) 1412, 1927
BfuI GTATCC 1 cut(s) 1840
BglII AGATCT 1 cut(s) 696
BisI GCNGC 5 cut(s) 1455, 1680, 2009, 2506, 2772
BlpI GCTNAGC 4 cut(s) 781, 1227, 2004, 2200
BlsI GCNGC 5 cut(s) 1456, 1681, 2010, 2507, 2773
BmcAI AGTACT 1 cut(s) 603
Bme1390I CCNGG 9 cut(s) 78, 79, 538, 1112, 1142, 1386, 1477, 1834, 2269
Bme18I GGWCC 6 cut(s) 392, 472, 691, 702, 1138, 1249
BmeRI GACNNNNNGTC 2 cut(s) 1434, 2542
BmeT110I CYCGRG 2 cut(s) 77, 792
BmgT120I GGNCC 8 cut(s) 392, 472, 691, 702, 1138, 1249, 2038, 2345
BmiI GGNNCC 5 cut(s) 132, 435, 473, 1917, 2239
BmrFI CCNGG 9 cut(s) 78, 79, 538, 1112, 1142, 1386, 1477, 1834, 2269
BmrI ACTGGG 2 cut(s) 726, 984
BmuI ACTGGG 2 cut(s) 726, 984
BpmI CTGGAG 2 cut(s) 1260, 1698
Bpu10I CCTNAGC 5 cut(s) 135, 276, 429, 706, 2084
Bpu1102I GCTNAGC 4 cut(s) 781, 1227, 2004, 2200
BpuEI CTTGAG 2 cut(s) 1874, 2312
BpuMI CCSGG 5 cut(s) 78, 79, 538, 1142, 2269
BsaHI GRCGYC 2 cut(s) 151, 1931
BsaI GGTCTC 1 cut(s) 601
BsaJI CCNNGG 8 cut(s) 77, 78, 324, 898, 1384, 2193, 2207, 2760
BsaWI WCCGGW 1 cut(s) 1445
BsaXI ACNNNNNCTCC 2 cut(s) 2739, 2769
Bsc4I CCNNNNNNNGG 5 cut(s) 401, 617, 1238, 1385, 1445
Bse1I ACTGG 6 cut(s) 732, 979, 2100, 2262, 2420, 2457
Bse3DI GCAATG 4 cut(s) 16, 960, 2187, 2482
BseAI TCCGGA 1 cut(s) 1445
BseBI CCWGG 4 cut(s) 1112, 1386, 1477, 1834
BseDI CCNNGG 8 cut(s) 77, 78, 324, 898, 1384, 2193, 2207, 2760
BseGI GGATG 8 cut(s) 334, 368, 534, 565, 725, 808, 1115, 1379
BseLI CCNNNNNNNGG 5 cut(s) 401, 617, 1238, 1385, 1445
BseMI GCAATG 4 cut(s) 16, 960, 2187, 2482
BseNI ACTGG 6 cut(s) 732, 979, 2100, 2262, 2420, 2457
BseRI GAGGAG 3 cut(s) 372, 1259, 1779
BseSI GKGCMC 1 cut(s) 891
BseXI GCAGC 4 cut(s) 1441, 1666, 2020, 2758
BsgI GTGCAG 2 cut(s) 1868, 2007
Bsh1285I CGRYCG 2 cut(s) 1258, 1597
BshFI GGCC 9 cut(s) 274, 621, 664, 843, 1475, 1622, 2039, 2347, 2522
BshNI GGYRCC 1 cut(s) 1915
BsiEI CGRYCG 2 cut(s) 1258, 1597
BsiHKAI GWGCWC 4 cut(s) 891, 1395, 2677, 2800
BsiHKCI CYCGRG 2 cut(s) 77, 792
BsiSI CCGG 5 cut(s) 78, 538, 1141, 1446, 2269
BslFI GGGAC 7 cut(s) 162, 404, 432, 991, 1422, 1441, 1539
BslI CCNNNNNNNGG 5 cut(s) 401, 617, 1238, 1385, 1445
BsmAI GTCTC 4 cut(s) 601, 1922, 2066, 2658
BsmBI CGTCTC 1 cut(s) 1922
BsmFI GGGAC 7 cut(s) 162, 404, 432, 991, 1422, 1441, 1539
BsmI GAATGC 3 cut(s) 806, 877, 2115
BsnI GGCC 9 cut(s) 274, 621, 664, 843, 1475, 1622, 2039, 2347, 2522
Bso31I GGTCTC 1 cut(s) 601
BsoBI CYCGRG 2 cut(s) 77, 792
Bsp1286I GDGCHC 7 cut(s) 782, 891, 1395, 1410, 2201, 2677, 2800
Bsp13I TCCGGA 1 cut(s) 1445
Bsp1407I TGTACA 1 cut(s) 2493
Bsp143I GATC 9 cut(s) 130, 577, 667, 696, 1255, 2121, 2260, 2646, 2803
Bsp1720I GCTNAGC 4 cut(s) 781, 1227, 2004, 2200
Bsp19I CCATGG 3 cut(s) 2193, 2207, 2760
BspACI CCGC 5 cut(s) 1290, 1299, 2088, 2505, 2784
BspANI GGCC 9 cut(s) 274, 621, 664, 843, 1475, 1622, 2039, 2347, 2522
BspEI TCCGGA 1 cut(s) 1445
BspHI TCATGA 1 cut(s) 55
BspLI GGNNCC 5 cut(s) 132, 435, 473, 1917, 2239
BspMAI CTGCAG 1 cut(s) 2528
BspMI ACCTGC 2 cut(s) 1412, 1927
BspPI GGATC 3 cut(s) 125, 138, 2268
BspQI GCTCTTC 1 cut(s) 1881
BspT107I GGYRCC 1 cut(s) 1915
BspTNI GGTCTC 1 cut(s) 601
BsrDI GCAATG 4 cut(s) 16, 960, 2187, 2482
BsrGI TGTACA 1 cut(s) 2493
BsrI ACTGG 6 cut(s) 732, 979, 2100, 2262, 2420, 2457
BssECI CCNNGG 8 cut(s) 77, 78, 324, 898, 1384, 2193, 2207, 2760
BssMI GATC 9 cut(s) 130, 577, 667, 696, 1255, 2121, 2260, 2646, 2803
BssNAI GTATAC 1 cut(s) 210
BssNI GRCGYC 2 cut(s) 151, 1931
BssSI CACGAG 1 cut(s) 203
BssT1I CCWWGG 4 cut(s) 898, 2193, 2207, 2760
Bst1107I GTATAC 1 cut(s) 210
Bst2BI CACGAG 1 cut(s) 203
Bst2UI CCWGG 4 cut(s) 1112, 1386, 1477, 1834
Bst4CI ACNGT 8 cut(s) 949, 1038, 1553, 1828, 1999, 2149, 2305, 2557
Bst6I CTCTTC 1 cut(s) 1881
BstACI GRCGYC 2 cut(s) 151, 1931
BstAUI TGTACA 1 cut(s) 2493
BstC8I GCNNGC 6 cut(s) 29, 841, 912, 1359, 2524, 2782
BstDSI CCRYGG 3 cut(s) 2193, 2207, 2760
BstEII GGTNACC 3 cut(s) 1547, 2363, 2755
BstF5I GGATG 8 cut(s) 334, 368, 534, 565, 725, 808, 1115, 1379
BstKTI GATC 9 cut(s) 133, 580, 670, 699, 1258, 2124, 2263, 2649, 2806
BstMAI GTCTC 4 cut(s) 601, 1922, 2066, 2658
BstMBI GATC 9 cut(s) 130, 577, 667, 696, 1255, 2121, 2260, 2646, 2803
BstMCI CGRYCG 2 cut(s) 1258, 1597
BstMWI GCNNNNNNNGC 7 cut(s) 187, 881, 1298, 1619, 2000, 2385, 2777
BstNI CCWGG 4 cut(s) 1112, 1386, 1477, 1834
BstNSI RCATGY 6 cut(s) 884, 924, 1213, 1994, 2432, 2494
BstPI GGTNACC 3 cut(s) 1547, 2363, 2755
BstSCI CCNGG 9 cut(s) 76, 77, 536, 1110, 1140, 1384, 1475, 1832, 2267
BstSFI CTRYAG 2 cut(s) 2524, 2556
BstSLI GKGCMC 1 cut(s) 891
BstV1I GCAGC 4 cut(s) 1441, 1666, 2020, 2758
BstX2I RGATCY 2 cut(s) 130, 696
BstXI CCANNNNNNTGG 3 cut(s) 482, 541, 1630
BstYI RGATCY 2 cut(s) 130, 696
BstZ17I GTATAC 1 cut(s) 210
BsuI GTATCC 1 cut(s) 1840
BsuRI GGCC 9 cut(s) 274, 621, 664, 843, 1475, 1622, 2039, 2347, 2522
BtgI CCRYGG 3 cut(s) 2193, 2207, 2760
BtgZI GCGATG 1 cut(s) 295
BtsCI GGATG 8 cut(s) 334, 368, 534, 565, 725, 808, 1115, 1379
BtsIMutI CAGTG 4 cut(s) 739, 1917, 2413, 2634
BveI ACCTGC 2 cut(s) 1412, 1927
Cac8I GCNNGC 6 cut(s) 29, 841, 912, 1359, 2524, 2782
CaiI CAGNNNCTG 1 cut(s) 1682
CciI TCATGA 1 cut(s) 55
Cfr13I GGNCC 8 cut(s) 392, 472, 691, 702, 1138, 1249, 2038, 2345
Cfr9I CCCGGG 1 cut(s) 77
CseI GACGC 1 cut(s) 159
Csp6I GTAC 5 cut(s) 602, 756, 1176, 1916, 2494
CviQI GTAC 5 cut(s) 602, 756, 1176, 1916, 2494
DpnI GATC 9 cut(s) 132, 579, 669, 698, 1257, 2123, 2262, 2648, 2805
DpnII GATC 9 cut(s) 130, 577, 667, 696, 1255, 2121, 2260, 2646, 2803
DriI GACNNNNNGTC 2 cut(s) 1434, 2542
EaeI YGGCCR 1 cut(s) 1473
Eam1104I CTCTTC 1 cut(s) 1881
Eam1105I GACNNNNNGTC 2 cut(s) 1434, 2542
EarI CTCTTC 1 cut(s) 1881
Ecl136II GAGCTC 1 cut(s) 2798
Eco130I CCWWGG 4 cut(s) 898, 2193, 2207, 2760
Eco147I AGGCCT 1 cut(s) 664
Eco24I GRGCYC 4 cut(s) 782, 1410, 2201, 2800
Eco31I GGTCTC 1 cut(s) 601
Eco32I GATATC 1 cut(s) 2789
Eco47I GGWCC 6 cut(s) 392, 472, 691, 702, 1138, 1249
Eco53kI GAGCTC 1 cut(s) 2798
Eco57I CTGAAG 4 cut(s) 408, 1722, 1893, 2067
Eco88I CYCGRG 2 cut(s) 77, 792
Eco91I GGTNACC 3 cut(s) 1547, 2363, 2755
EcoICRI GAGCTC 1 cut(s) 2798
EcoO65I GGTNACC 3 cut(s) 1547, 2363, 2755
EcoRI GAATTC 1 cut(s) 1081
EcoRII CCWGG 4 cut(s) 1110, 1384, 1475, 1832
EcoRV GATATC 1 cut(s) 2789
EcoT14I CCWWGG 4 cut(s) 898, 2193, 2207, 2760
EcoT22I ATGCAT 4 cut(s) 808, 926, 2158, 2189
EcoT38I GRGCYC 4 cut(s) 782, 1410, 2201, 2800
ErhI CCWWGG 4 cut(s) 898, 2193, 2207, 2760
Esp3I CGTCTC 1 cut(s) 1922
FalI AAGNNNNNCTT 4 cut(s) 828, 860, 1860, 1892
FaqI GGGAC 7 cut(s) 162, 404, 432, 991, 1422, 1441, 1539
FbaI TGATCA 1 cut(s) 667
FblI GTMKAC 1 cut(s) 209
Fnu4HI GCNGC 5 cut(s) 1455, 1680, 2009, 2506, 2772
FokI GGATG 8 cut(s) 341, 375, 541, 572, 732, 815, 1102, 1366
FriOI GRGCYC 4 cut(s) 782, 1410, 2201, 2800
Fsp4HI GCNGC 5 cut(s) 1455, 1680, 2009, 2506, 2772
FspBI CTAG 6 cut(s) 98, 219, 1223, 1896, 2316, 2792
GluI GCNGC 5 cut(s) 1455, 1680, 2009, 2506, 2772
GsuI CTGGAG 2 cut(s) 1260, 1698
HaeIII GGCC 9 cut(s) 274, 621, 664, 843, 1475, 1622, 2039, 2347, 2522
HapII CCGG 5 cut(s) 78, 538, 1141, 1446, 2269
HgaI GACGC 1 cut(s) 159
Hin1I GRCGYC 2 cut(s) 151, 1931
HincII GTYRAC 2 cut(s) 1807, 2108
HindII GTYRAC 2 cut(s) 1807, 2108
HindIII AAGCTT 1 cut(s) 1905
HpaII CCGG 5 cut(s) 78, 538, 1141, 1446, 2269
Hpy166II GTNNAC 9 cut(s) 210, 334, 488, 889, 1001, 1807, 2093, 2108, 2313
Hpy8I GTNNAC 9 cut(s) 210, 334, 488, 889, 1001, 1807, 2093, 2108, 2313
HpyCH4III ACNGT 8 cut(s) 949, 1038, 1553, 1828, 1999, 2149, 2305, 2557
HpyCH4IV ACGT 2 cut(s) 518, 1931
HpyF10VI GCNNNNNNNGC 7 cut(s) 187, 881, 1298, 1619, 2000, 2385, 2777
HpySE526I ACGT 2 cut(s) 518, 1931
Hsp92I GRCGYC 2 cut(s) 151, 1931
Kpn2I TCCGGA 1 cut(s) 1445
KpnI GGTACC 1 cut(s) 1919
Ksp22I TGATCA 1 cut(s) 667
Kzo9I GATC 9 cut(s) 130, 577, 667, 696, 1255, 2121, 2260, 2646, 2803
LguI GCTCTTC 1 cut(s) 1881
LmnI GCTCC 5 cut(s) 404, 658, 1723, 2209, 2795
Lsp1109I GCAGC 4 cut(s) 1441, 1666, 2020, 2758
MaeI CTAG 6 cut(s) 98, 219, 1223, 1896, 2316, 2792
MaeII ACGT 2 cut(s) 518, 1931
MalI GATC 9 cut(s) 132, 579, 669, 698, 1257, 2123, 2262, 2648, 2805
MboI GATC 9 cut(s) 130, 577, 667, 696, 1255, 2121, 2260, 2646, 2803
MboII GAAGA 6 cut(s) 587, 880, 1365, 1682, 1868, 2234
MfeI CAATTG 2 cut(s) 1790, 2706
MflI RGATCY 2 cut(s) 130, 696
MhlI GDGCHC 7 cut(s) 782, 891, 1395, 1410, 2201, 2677, 2800
MlsI TGGCCA 1 cut(s) 1475
MluNI TGGCCA 1 cut(s) 1475
MlyI GAGTC 4 cut(s) 752, 1802, 2027, 2068
MmeI TCCRAC 4 cut(s) 219, 1105, 1577, 1666
Mox20I TGGCCA 1 cut(s) 1475
Mph1103I ATGCAT 4 cut(s) 808, 926, 2158, 2189
MroI TCCGGA 1 cut(s) 1445
MroXI GAANNNNTTC 1 cut(s) 1875
MscI TGGCCA 1 cut(s) 1475
MseI TTAA 7 cut(s) 441, 773, 813, 1785, 2151, 2441, 2854
MslI CAYNNNNRTG 6 cut(s) 309, 751, 919, 2192, 2433, 2495
Msp20I TGGCCA 1 cut(s) 1475
MspA1I CMGCKG 2 cut(s) 139, 1679
MspI CCGG 5 cut(s) 78, 538, 1141, 1446, 2269
MspR9I CCNGG 9 cut(s) 78, 79, 538, 1112, 1142, 1386, 1477, 1834, 2269
MunI CAATTG 2 cut(s) 1790, 2706
Mva1269I GAATGC 3 cut(s) 806, 877, 2115
MvaI CCWGG 4 cut(s) 1112, 1386, 1477, 1834
MwoI GCNNNNNNNGC 7 cut(s) 187, 881, 1298, 1619, 2000, 2385, 2777
NciI CCSGG 5 cut(s) 78, 79, 538, 1142, 2269
NcoI CCATGG 3 cut(s) 2193, 2207, 2760
NdeII GATC 9 cut(s) 130, 577, 667, 696, 1255, 2121, 2260, 2646, 2803
NlaIV GGNNCC 5 cut(s) 132, 435, 473, 1917, 2239
NmeAIII GCCGAG 3 cut(s) 30, 349, 1168
NmuCI GTSAC 6 cut(s) 302, 502, 646, 831, 2336, 2755
NsiI ATGCAT 4 cut(s) 808, 926, 2158, 2189
NspI RCATGY 6 cut(s) 884, 924, 1213, 1994, 2432, 2494
PaeR7I CTCGAG 1 cut(s) 792
PagI TCATGA 1 cut(s) 55
PaqCI CACCTGC 1 cut(s) 1412
PceI AGGCCT 1 cut(s) 664
PciI ACATGT 1 cut(s) 2490
PciSI GCTCTTC 1 cut(s) 1881
PctI GAATGC 3 cut(s) 806, 877, 2115
PdmI GAANNNNTTC 1 cut(s) 1875
PfeI GAWTC 6 cut(s) 1166, 1217, 1492, 2162, 2406, 2818
PflMI CCANNNNNTGG 1 cut(s) 1385
PfoI TCCNGGA 1 cut(s) 1140
PkrI GCNGC 5 cut(s) 1456, 1681, 2010, 2507, 2773
Ple19I CGATCG 1 cut(s) 1258
PleI GAGTC 4 cut(s) 751, 1802, 2026, 2068
PpsI GAGTC 4 cut(s) 751, 1802, 2026, 2068
PscI ACATGT 1 cut(s) 2490
PsiI TTATAA 1 cut(s) 683
Psp124BI GAGCTC 1 cut(s) 2800
Psp6I CCWGG 4 cut(s) 1110, 1384, 1475, 1832
PspEI GGTNACC 3 cut(s) 1547, 2363, 2755
PspGI CCWGG 4 cut(s) 1110, 1384, 1475, 1832
PspN4I GGNNCC 5 cut(s) 132, 435, 473, 1917, 2239
PspPI GGNCC 8 cut(s) 392, 472, 691, 702, 1138, 1249, 2038, 2345
PspXI VCTCGAGB 1 cut(s) 792
PstI CTGCAG 1 cut(s) 2528
PstNI CAGNNNCTG 1 cut(s) 1682
PsuI RGATCY 2 cut(s) 130, 696
PvuI CGATCG 1 cut(s) 1258
PvuII CAGCTG 2 cut(s) 139, 1679
RsaI GTAC 5 cut(s) 603, 757, 1177, 1917, 2495
RsaNI GTAC 5 cut(s) 602, 756, 1176, 1916, 2494
RseI CAYNNNNRTG 6 cut(s) 309, 751, 919, 2192, 2433, 2495
SacI GAGCTC 1 cut(s) 2800
SapI GCTCTTC 1 cut(s) 1881
SaqAI TTAA 7 cut(s) 441, 773, 813, 1785, 2151, 2441, 2854
SatI GCNGC 5 cut(s) 1455, 1680, 2009, 2506, 2772
Sau3AI GATC 9 cut(s) 130, 577, 667, 696, 1255, 2121, 2260, 2646, 2803
Sau96I GGNCC 8 cut(s) 392, 472, 691, 702, 1138, 1249, 2038, 2345
ScaI AGTACT 1 cut(s) 603
SchI GAGTC 4 cut(s) 752, 1802, 2027, 2068
ScrFI CCNGG 9 cut(s) 78, 79, 538, 1112, 1142, 1386, 1477, 1834, 2269
SduI GDGCHC 7 cut(s) 782, 891, 1395, 1410, 2201, 2677, 2800
SfcI CTRYAG 2 cut(s) 2524, 2556
Sfr274I CTCGAG 1 cut(s) 792
SinI GGWCC 6 cut(s) 392, 472, 691, 702, 1138, 1249
SlaI CTCGAG 1 cut(s) 792
SmaI CCCGGG 1 cut(s) 79
SmiMI CAYNNNNRTG 6 cut(s) 309, 751, 919, 2192, 2433, 2495
SmlI CTYRAG 3 cut(s) 792, 1889, 2291
SmoI CTYRAG 3 cut(s) 792, 1889, 2291
SpeI ACTAGT 1 cut(s) 2315
SseBI AGGCCT 1 cut(s) 664
SsiI CCGC 5 cut(s) 1290, 1299, 2088, 2505, 2784
SspMI CTAG 6 cut(s) 98, 219, 1223, 1896, 2316, 2792
SstI GAGCTC 1 cut(s) 2800
StuI AGGCCT 1 cut(s) 664
StyD4I CCNGG 9 cut(s) 76, 77, 536, 1110, 1140, 1384, 1475, 1832, 2267
StyI CCWWGG 4 cut(s) 898, 2193, 2207, 2760
TaaI ACNGT 8 cut(s) 949, 1038, 1553, 1828, 1999, 2149, 2305, 2557
TaiI ACGT 2 cut(s) 521, 1934
TaqI TCGA 5 cut(s) 793, 1331, 2321, 2546, 2832
TaqII GACCGA 1 cut(s) 1583
TatI WGTACW 3 cut(s) 601, 1175, 2493
TauI GCSGC 1 cut(s) 2508
TfiI GAWTC 6 cut(s) 1166, 1217, 1492, 2162, 2406, 2818
Tru1I TTAA 7 cut(s) 441, 773, 813, 1785, 2151, 2441, 2854
Tru9I TTAA 7 cut(s) 441, 773, 813, 1785, 2151, 2441, 2854
TscAI CASTG 4 cut(s) 739, 1917, 2420, 2634
TseFI GTSAC 6 cut(s) 302, 502, 646, 831, 2336, 2755
TseI GCWGC 4 cut(s) 1454, 1679, 2008, 2771
Tsp45I GTSAC 6 cut(s) 302, 502, 646, 831, 2336, 2755
TspMI CCCGGG 1 cut(s) 77
TspRI CASTG 4 cut(s) 739, 1917, 2420, 2634
Van91I CCANNNNNTGG 1 cut(s) 1385
VneI GTGCAC 1 cut(s) 887
VpaK11BI GGWCC 6 cut(s) 392, 472, 691, 702, 1138, 1249
XapI RAATTY 4 cut(s) 381, 941, 1005, 1081
XceI RCATGY 6 cut(s) 884, 924, 1213, 1994, 2432, 2494
XhoI CTCGAG 1 cut(s) 792
XmaI CCCGGG 1 cut(s) 77
XmiI GTMKAC 1 cut(s) 209
XmnI GAANNNNTTC 1 cut(s) 1875
XspI CTAG 6 cut(s) 98, 219, 1223, 1896, 2316, 2792
ZraI GACGTC 1 cut(s) 1932
ZrmI AGTACT 1 cut(s) 603
Zsp2I ATGCAT 4 cut(s) 808, 926, 2158, 2189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.