Rh4BG010100

Enhancer of mRNA-decapping protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Reverse (-)
1471781 .. 1472107
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG010100.1

Sequence Viewer

Length: 327 bp
ATGCTGATGCTGGAGAGGAAGACCACTAGCCCAGGTGTTGGTGATGGTGCCAGCATGTCAGAACCACTAGCCCTGCCTCATTCTGGAGAGGAAGACCAGGATCGCTCTACAAAAGATGTATCTGGGTCAGCTACCGCCAGAACCACGTCACAACTACAAACACCAAATGCAAAGTCGAGAAAACAGAAATGGAAAAATATGCAAGCATCAGGTCCATCTTCCCCATCACCAGGTGTTCTCAACTCAATAGAGCCCTCCAATGAAGCAGGTGGCACTGTGGCAGTTCAAGTCCCCACTCTGGAGAAGCTGCATTTCCTCAGATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

108

Amino Acids

11.43

Weight (kDa)

8.11

Isoelectric Point (pI)

61.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 257
Acc36I ACCTGC 1 cut(s) 257
AccB1I GGYRCC 1 cut(s) 47
AccB7I CCANNNNNTGG 1 cut(s) 38
AciI CCGC 1 cut(s) 135
AclWI GGATC 1 cut(s) 108
AdeI CACNNNGTG 1 cut(s) 233
AfiI CCNNNNNNNGG 4 cut(s) 38, 83, 230, 298
AgsI TTSAA 1 cut(s) 287
AjiI CACGTC 1 cut(s) 147
AjnI CCWGG 3 cut(s) 31, 96, 229
AluBI AGCT 2 cut(s) 131, 307
AluI AGCT 2 cut(s) 131, 307
AlwI GGATC 1 cut(s) 108
ApeKI GCWGC 1 cut(s) 307
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
AspS9I GGNCC 1 cut(s) 212
AsuHPI GGTGA 2 cut(s) 53, 219
AvaII GGWCC 1 cut(s) 212
BanI GGYRCC 1 cut(s) 47
BanII GRGCYC 1 cut(s) 255
BbsI GAAGAC 2 cut(s) 26, 99
BbvI GCAGC 1 cut(s) 294
BccI CCATC 3 cut(s) 38, 223, 232
BciT130I CCWGG 3 cut(s) 33, 98, 231
BfaI CTAG 2 cut(s) 27, 68
BfuAI ACCTGC 1 cut(s) 257
BisI GCNGC 1 cut(s) 308
BlsI GCNGC 1 cut(s) 309
Bme1390I CCNGG 3 cut(s) 33, 98, 231
Bme18I GGWCC 1 cut(s) 212
BmgBI CACGTC 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 212
BmiI GGNNCC 1 cut(s) 49
BmrFI CCNGG 3 cut(s) 33, 98, 231
BmsI GCATC 1 cut(s) 215
BpiI GAAGAC 2 cut(s) 26, 99
BpmI CTGGAG 3 cut(s) 32, 105, 320
BsaJI CCNNGG 1 cut(s) 31
Bsc4I CCNNNNNNNGG 4 cut(s) 38, 83, 230, 298
BseBI CCWGG 3 cut(s) 33, 98, 231
BseDI CCNNGG 1 cut(s) 31
BseLI CCNNNNNNNGG 4 cut(s) 38, 83, 230, 298
BseXI GCAGC 1 cut(s) 294
BshNI GGYRCC 1 cut(s) 47
BslFI GGGAC 1 cut(s) 275
BslI CCNNNNNNNGG 4 cut(s) 38, 83, 230, 298
BsmFI GGGAC 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 1 cut(s) 100
BspACI CCGC 1 cut(s) 135
BspLI GGNNCC 1 cut(s) 49
BspMI ACCTGC 1 cut(s) 257
BspPI GGATC 1 cut(s) 108
BspT107I GGYRCC 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 1 cut(s) 100
Bst2UI CCWGG 3 cut(s) 33, 98, 231
Bst4CI ACNGT 1 cut(s) 277
BstC8I GCNNGC 2 cut(s) 52, 204
BstDEI CTNAG 1 cut(s) 317
BstKTI GATC 1 cut(s) 103
BstMBI GATC 1 cut(s) 100
BstNI CCWGG 3 cut(s) 33, 98, 231
BstNSI RCATGY 1 cut(s) 58
BstSCI CCNGG 3 cut(s) 31, 96, 229
BstV1I GCAGC 1 cut(s) 294
BstV2I GAAGAC 2 cut(s) 26, 99
BtrI CACGTC 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 273
BveI ACCTGC 1 cut(s) 257
Cac8I GCNNGC 2 cut(s) 52, 204
Cfr13I GGNCC 1 cut(s) 212
CsiI ACCWGGT 1 cut(s) 229
CviAII CATG 1 cut(s) 55
CviJI RGCY 5 cut(s) 30, 71, 131, 253, 307
CviKI_1 RGCY 5 cut(s) 30, 71, 131, 253, 307
DdeI CTNAG 1 cut(s) 317
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
DraIII CACNNNGTG 1 cut(s) 233
Eco24I GRGCYC 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 212
EcoRII CCWGG 3 cut(s) 31, 96, 229
EcoT38I GRGCYC 1 cut(s) 255
FaeI CATG 1 cut(s) 58
FaiI YATR 3 cut(s) 56, 200, 325
FaqI GGGAC 1 cut(s) 275
FatI CATG 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 308
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 1 cut(s) 308
FspBI CTAG 2 cut(s) 27, 68
GluI GCNGC 1 cut(s) 308
GsuI CTGGAG 3 cut(s) 32, 105, 320
Hin1II CATG 1 cut(s) 58
HphI GGTGA 2 cut(s) 53, 219
Hpy188I TCNGA 2 cut(s) 61, 320
Hpy188III TCNNGA 3 cut(s) 84, 177, 299
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4IV ACGT 1 cut(s) 146
HpyCH4V TGCA 3 cut(s) 170, 202, 310
HpyF3I CTNAG 1 cut(s) 317
HpySE526I ACGT 1 cut(s) 146
Hsp92II CATG 1 cut(s) 58
Kzo9I GATC 1 cut(s) 100
Lsp1109I GCAGC 1 cut(s) 294
LweI GCATC 1 cut(s) 215
MabI ACCWGGT 1 cut(s) 229
MaeI CTAG 2 cut(s) 27, 68
MaeII ACGT 1 cut(s) 146
MaeIII GTNAC 1 cut(s) 147
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 3 cut(s) 31, 104, 210
MhlI GDGCHC 1 cut(s) 255
MnlI CCTC 5 cut(s) 9, 82, 87, 265, 326
MspR9I CCNGG 3 cut(s) 33, 98, 231
MvaI CCWGG 3 cut(s) 33, 98, 231
NdeII GATC 1 cut(s) 100
NlaIII CATG 1 cut(s) 58
NlaIV GGNNCC 1 cut(s) 49
NmuCI GTSAC 1 cut(s) 147
NspI RCATGY 1 cut(s) 58
PaqCI CACCTGC 1 cut(s) 257
PflMI CCANNNNNTGG 1 cut(s) 38
PkrI GCNGC 1 cut(s) 309
Psp6I CCWGG 3 cut(s) 31, 96, 229
PspGI CCWGG 3 cut(s) 31, 96, 229
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 1 cut(s) 212
SatI GCNGC 1 cut(s) 308
Sau3AI GATC 1 cut(s) 100
Sau96I GGNCC 1 cut(s) 212
ScrFI CCNGG 3 cut(s) 33, 98, 231
SduI GDGCHC 1 cut(s) 255
SetI ASST 7 cut(s) 37, 133, 149, 214, 235, 271, 309
SexAI ACCWGGT 1 cut(s) 229
SfaNI GCATC 1 cut(s) 215
SinI GGWCC 1 cut(s) 212
SsiI CCGC 1 cut(s) 135
SspMI CTAG 2 cut(s) 27, 68
StyD4I CCNGG 3 cut(s) 31, 96, 229
TaaI ACNGT 1 cut(s) 277
TaiI ACGT 1 cut(s) 149
TaqI TCGA 1 cut(s) 176
TscAI CASTG 1 cut(s) 280
TseFI GTSAC 1 cut(s) 147
TseI GCWGC 1 cut(s) 307
Tsp45I GTSAC 1 cut(s) 147
TspDTI ATGAA 1 cut(s) 276
TspRI CASTG 1 cut(s) 280
Van91I CCANNNNNTGG 1 cut(s) 38
VpaK11BI GGWCC 1 cut(s) 212
XceI RCATGY 1 cut(s) 58
XspI CTAG 2 cut(s) 27, 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.