Rmu_sc0004750.1_g000003

Enhancer of mRNA-decapping protein 4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004750.1
OG0000324
Physical Location & Seq
Reverse (-)
31668 .. 32731
1064 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004750.1_g000003.1.cds

Sequence Viewer

Length: 645 bp
atgatggttactgtcccaattacaaatgaaggcaaacaattagaggcggctctcggtcggagtatggagaaggctgtaaaggccaataatattgctttgagcgctctgtctcaagaagagaatgcaaagaatgagaaattattgcgagaccatactcaacaagtaattggtttgattgtgaacaaggactttccagtcatgttagagaaaatggtaaaaaatgaaatagctgctgttggaccagctgttgttcgtgcaatcactccagctgcggagaaaacattacctttggttatatctgattgctatcagagaggagtgggagataaagcagttaatcaattggaaaaatcagctaactcaaaacttgaagctactgtatccaggcaaatcgaggcgcagtttcaaacatcgggtaaacaagctcttcaggatgctctcaagtttagcatggaagcttcagtggtacctccctttgagaagtcatgtaaagccatgtttgaccaagtagatgccacattccagaaagtaacggttgaacatgcaactgtggctcagcagcattttgagtctgcacattcgcctttggcccatgctttaagggttgatactgcagaactggaatgtgtaatgctgctccactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

214

Amino Acids

23.35

Weight (kDa)

6.09

Isoelectric Point (pI)

35.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 194
Acc65I GGTACC 1 cut(s) 466
AccB1I GGYRCC 1 cut(s) 466
AciI CCGC 2 cut(s) 47, 272
AcuI CTGAAG 2 cut(s) 413, 444
AfaI GTAC 1 cut(s) 468
AfeI AGCGCT 1 cut(s) 103
AgsI TTSAA 3 cut(s) 371, 407, 539
AjnI CCWGG 1 cut(s) 383
AluBI AGCT 7 cut(s) 230, 245, 269, 356, 374, 425, 458
AluI AGCT 7 cut(s) 230, 245, 269, 356, 374, 425, 458
Alw26I GTCTC 2 cut(s) 114, 141
Aor51HI AGCGCT 1 cut(s) 103
AoxI GGCC 2 cut(s) 81, 588
ApeKI GCWGC 4 cut(s) 230, 269, 559, 634
Asp718I GGTACC 1 cut(s) 466
AspLEI GCGC 2 cut(s) 104, 400
AspS9I GGNCC 2 cut(s) 239, 589
AvaII GGWCC 1 cut(s) 239
BanI GGYRCC 1 cut(s) 466
BbvI GCAGC 4 cut(s) 217, 256, 571, 621
BciT130I CCWGG 1 cut(s) 385
BciVI GTATCC 1 cut(s) 391
BcoDI GTCTC 2 cut(s) 114, 141
BfaI CTAG 1 cut(s) 643
BfmI CTRYAG 1 cut(s) 612
BfoI RGCGCY 1 cut(s) 105
BfuI GTATCC 1 cut(s) 391
BisI GCNGC 5 cut(s) 48, 231, 270, 560, 635
BlpI GCTNAGC 1 cut(s) 555
BlsI GCNGC 5 cut(s) 49, 232, 271, 561, 636
Bme1390I CCNGG 1 cut(s) 385
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 2 cut(s) 239, 589
BmiI GGNNCC 1 cut(s) 468
BmrFI CCNGG 1 cut(s) 385
BmsI GCATC 2 cut(s) 424, 502
BpmI CTGGAG 1 cut(s) 249
Bpu1102I GCTNAGC 1 cut(s) 555
BpuEI CTTGAG 2 cut(s) 96, 425
BsaBI GATNNNNATC 1 cut(s) 306
BsaI GGTCTC 1 cut(s) 141
Bse1I ACTGG 2 cut(s) 194, 624
Bse8I GATNNNNATC 1 cut(s) 306
BseBI CCWGG 1 cut(s) 385
BseGI GGATG 1 cut(s) 439
BseJI GATNNNNATC 1 cut(s) 306
BseMII CTCAG 1 cut(s) 569
BseNI ACTGG 2 cut(s) 194, 624
BseRI GAGGAG 1 cut(s) 330
BseXI GCAGC 4 cut(s) 217, 256, 571, 621
BsgI GTGCAG 1 cut(s) 558
Bsh1285I CGRYCG 1 cut(s) 58
BshFI GGCC 2 cut(s) 83, 590
BshNI GGYRCC 1 cut(s) 466
BsiEI CGRYCG 1 cut(s) 58
BsmAI GTCTC 2 cut(s) 114, 141
BsmI GAATGC 1 cut(s) 127
BsnI GGCC 2 cut(s) 83, 590
Bso31I GGTCTC 1 cut(s) 141
Bsp1720I GCTNAGC 1 cut(s) 555
BspACI CCGC 2 cut(s) 47, 272
BspANI GGCC 2 cut(s) 83, 590
BspCNI CTCAG 1 cut(s) 568
BspLI GGNNCC 1 cut(s) 468
BspMAI CTGCAG 1 cut(s) 616
BspQI GCTCTTC 1 cut(s) 432
BspT107I GGYRCC 1 cut(s) 466
BspTNI GGTCTC 1 cut(s) 141
BsrI ACTGG 2 cut(s) 194, 624
Bst2UI CCWGG 1 cut(s) 385
Bst4CI ACNGT 4 cut(s) 13, 379, 535, 550
Bst6I CTCTTC 2 cut(s) 111, 432
BstDEI CTNAG 1 cut(s) 555
BstF5I GGATG 1 cut(s) 439
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 2 cut(s) 104, 400
BstMAI GTCTC 2 cut(s) 114, 141
BstMCI CGRYCG 1 cut(s) 58
BstMWI GCNNNNNNNGC 3 cut(s) 80, 101, 551
BstNI CCWGG 1 cut(s) 385
BstNSI RCATGY 1 cut(s) 545
BstSCI CCNGG 1 cut(s) 383
BstSFI CTRYAG 1 cut(s) 612
BstV1I GCAGC 4 cut(s) 217, 256, 571, 621
BsuI GTATCC 1 cut(s) 391
BsuRI GGCC 2 cut(s) 83, 590
BtsCI GGATG 1 cut(s) 439
BtsIMutI CAGTG 1 cut(s) 468
CfoI GCGC 2 cut(s) 104, 400
Cfr13I GGNCC 2 cut(s) 239, 589
Csp6I GTAC 1 cut(s) 467
CviAII CATG 6 cut(s) 199, 451, 486, 496, 542, 593
CviQI GTAC 1 cut(s) 467
DdeI CTNAG 1 cut(s) 555
DrdI GACNNNNNNGTC 1 cut(s) 194
DseDI GACNNNNNNGTC 1 cut(s) 194
Eam1104I CTCTTC 2 cut(s) 111, 432
EarI CTCTTC 2 cut(s) 111, 432
Eco31I GGTCTC 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 239
Eco47III AGCGCT 1 cut(s) 103
Eco57I CTGAAG 2 cut(s) 413, 444
EcoRII CCWGG 1 cut(s) 383
FaeI CATG 6 cut(s) 202, 454, 489, 499, 545, 596
FaiI YATR 9 cut(s) 65, 153, 200, 296, 452, 487, 497, 543, 594
FatI CATG 6 cut(s) 198, 450, 485, 495, 541, 592
Fnu4HI GCNGC 5 cut(s) 48, 231, 270, 560, 635
FokI GGATG 1 cut(s) 446
Fsp4HI GCNGC 5 cut(s) 48, 231, 270, 560, 635
FspBI CTAG 1 cut(s) 643
GlaI GCGC 2 cut(s) 103, 399
GluI GCNGC 5 cut(s) 48, 231, 270, 560, 635
GsuI CTGGAG 1 cut(s) 249
HaeII RGCGCY 1 cut(s) 105
HaeIII GGCC 2 cut(s) 83, 590
HhaI GCGC 2 cut(s) 104, 400
Hin1II CATG 6 cut(s) 202, 454, 489, 499, 545, 596
Hin6I GCGC 2 cut(s) 102, 398
HinP1I GCGC 2 cut(s) 102, 398
HindIII AAGCTT 1 cut(s) 456
HinfI GANTC 1 cut(s) 569
Hpy166II GTNNAC 2 cut(s) 181, 419
Hpy188I TCNGA 3 cut(s) 60, 301, 312
Hpy188III TCNNGA 3 cut(s) 113, 431, 523
Hpy8I GTNNAC 2 cut(s) 181, 419
HpyAV CCTTC 2 cut(s) 23, 64
HpyCH4III ACNGT 4 cut(s) 13, 379, 535, 550
HpyCH4V TGCA 5 cut(s) 125, 257, 545, 575, 614
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 101, 551
HpyF3I CTNAG 1 cut(s) 555
Hsp92II CATG 6 cut(s) 202, 454, 489, 499, 545, 596
HspAI GCGC 2 cut(s) 102, 398
KpnI GGTACC 1 cut(s) 470
LguI GCTCTTC 1 cut(s) 432
LmnI GCTCC 1 cut(s) 642
LpnPI CCDG 8 cut(s) 207, 255, 279, 370, 397, 416, 536, 605
Lsp1109I GCAGC 4 cut(s) 217, 256, 571, 621
LweI GCATC 2 cut(s) 424, 502
MaeI CTAG 1 cut(s) 643
MaeIII GTNAC 2 cut(s) 7, 529
MboII GAAGA 2 cut(s) 128, 419
MfeI CAATTG 1 cut(s) 341
MluCI AATT 5 cut(s) 18, 38, 137, 165, 341
MlyI GAGTC 1 cut(s) 578
MmeI TCCRAC 2 cut(s) 38, 217
MnlI CCTC 4 cut(s) 37, 308, 388, 480
MseI TTAA 2 cut(s) 336, 599
MspA1I CMGCKG 2 cut(s) 245, 269
MspR9I CCNGG 1 cut(s) 385
MunI CAATTG 1 cut(s) 341
Mva1269I GAATGC 1 cut(s) 127
MvaI CCWGG 1 cut(s) 385
MwoI GCNNNNNNNGC 3 cut(s) 80, 101, 551
NlaIII CATG 6 cut(s) 202, 454, 489, 499, 545, 596
NlaIV GGNNCC 1 cut(s) 468
NspI RCATGY 1 cut(s) 545
PciSI GCTCTTC 1 cut(s) 432
PctI GAATGC 1 cut(s) 127
PkrI GCNGC 5 cut(s) 49, 232, 271, 561, 636
PleI GAGTC 1 cut(s) 577
PpsI GAGTC 1 cut(s) 577
Psp6I CCWGG 1 cut(s) 383
PspGI CCWGG 1 cut(s) 383
PspN4I GGNNCC 1 cut(s) 468
PspPI GGNCC 2 cut(s) 239, 589
PstI CTGCAG 1 cut(s) 616
PvuII CAGCTG 2 cut(s) 245, 269
RsaI GTAC 1 cut(s) 468
RsaNI GTAC 1 cut(s) 467
SapI GCTCTTC 1 cut(s) 432
SaqAI TTAA 2 cut(s) 336, 599
SatI GCNGC 5 cut(s) 48, 231, 270, 560, 635
Sau96I GGNCC 2 cut(s) 239, 589
SchI GAGTC 1 cut(s) 578
ScrFI CCNGG 1 cut(s) 385
SetI ASST 9 cut(s) 232, 247, 271, 289, 358, 376, 427, 460, 472
SfaNI GCATC 2 cut(s) 424, 502
SfcI CTRYAG 1 cut(s) 612
SinI GGWCC 1 cut(s) 239
SmlI CTYRAG 2 cut(s) 111, 440
SmoI CTYRAG 2 cut(s) 111, 440
Sse9I AATT 5 cut(s) 18, 38, 137, 165, 341
SsiI CCGC 2 cut(s) 47, 272
SspI AATATT 1 cut(s) 91
SspMI CTAG 1 cut(s) 643
StyD4I CCNGG 1 cut(s) 383
TaaI ACNGT 4 cut(s) 13, 379, 535, 550
TaqI TCGA 1 cut(s) 393
TaqII GACCGA 1 cut(s) 44
TasI AATT 5 cut(s) 18, 38, 137, 165, 341
TauI GCSGC 1 cut(s) 50
Tru1I TTAA 2 cut(s) 336, 599
Tru9I TTAA 2 cut(s) 336, 599
TscAI CASTG 1 cut(s) 468
TseI GCWGC 4 cut(s) 230, 269, 559, 634
TspDTI ATGAA 2 cut(s) 42, 237
TspRI CASTG 1 cut(s) 468
VpaK11BI GGWCC 1 cut(s) 239
XceI RCATGY 1 cut(s) 545
XspI CTAG 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.