Rmu_sc0008066.1_g000009

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008066.1
OG0000324
Physical Location & Seq
Forward (+)
34284 .. 41054
6771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008066.1_g000009.1.cds

Sequence Viewer

Length: 3933 bp
atggcgtcccccggaaaccccaatccgccgccgccgcagcagcagcagcccttcgacatggccaagttctttaaacccacaagcccaacccctctctccccccattcccagcctcagacccaggcccccacccaaaaccctaaccctaatctgaactcgtcaggcttcccaatccctccggcctcttaccctcccccctctgggccctactcctaccctccccaaacggcgccgtatcaccagcagcaattccagtaccagcaccaccctcagcctcatcctcacaaccacccccaaattccttatcctcaagaccaccagctgctccaacagcggtcgctctcgtttcccatcccgcccctggctcccggtaattacaacattgccgccgccgccgccgcctccagccccggaaacgccaccgccaccaaccccaattccggcgcccgaatcatggccctgctcggtgctccttcctccagtctagaaatgccgccgcagcctgagttgtcggtccccggctctggcggggtttcgatggtgcccactcttcctatggggattccaccctccccggctcgaatgccgagcaataagctgccgaagggcaggcatttgattggggatagcgtggtttacgatgtggatgttaggttgcccggggagtttcagccgcagctggaagttacccccattactaagtatggttcggatcctcagctggtgttgggccgccaaattgcggtgaataagtcgtatatatgctatggattgaagcaggggaatattcgggttttgaatatacacactgcattgagatctttgtttcgagctcatacacagagggtcacagacatggctttctttgccgaggatgttcaccttttggctagtgtgagtgtagaaggacggctttttgtgtggaaaatttctgaaggtccagatgaagaaggtacgccacaaatcacaggaaagattgttgttgccattcaaatagttggtgagggggaagctgttcatccacgagtttgttggcactgtcataaacaggaggttttggttgttggaattgggaagcgtgttctacgaattgatactactaaagttgcaaagggtgaagtcccttctgctgaggatcctattaagtgtcctgttgaaaagcttgttgatggggtccaatttgttggtaaacatgatggagaggtgacagatttatcaatgtgccaatggatgaccacccggctggtttctgcttctatggatggaactataaagatctgggaagatcgcaagtcacaaccacttttagtactgagaccctatgatggccttcctgtttattcgtctacatttgtgacagctcccaacagacctgatcacatcatacttataacagtgggcccacttaatcgggaagtgaagatctggtcctcagagagtgaagaaggctggctgcttcccagtgatgctgagtcatggaaatgtacccagaccttagagttaaagagctctgctcaacctcgagtcgaggatgcattctttaatcaagtcatagcattgtcacaagctggccttcttttacttgcaaatgctaagaagaatgctatatatgccgtgcacttagactttggtggtgagccagcatccacacgcatggattacatagcagaatttactgttacaatgcctattttgagcttcactgggacaagtatatcacctcatggtgaacaaatcgttcaggtgtattgtgtccaaacacaagccattcaacagtatgctttggacttatccaagtgcttacctcccccattggagaattcaggtttggaaaagtcagattccagtttttcacatgatgcaaccgaggcggtgtcaactaattcagcaccaaaaccaaccatacaagctactagttctgagggtgcagccttgaggtatcctgtgcgcactgcttcggttgatccttccaattcaaaagatattaccacttcgtctatggaatcaaaacctgttgcatcggcaccggagattagtgatgctgatgctgtttttgtagcatcacaacctcttcctttgagtcctaggttgtcagggaaactttctggtttaagaagcccgacagatagcagtgatcatggtggtgaccaacaagttaatgagtactcagttgacaggcagatgaatactgctcgttcaaacttgtctgatatgcctgcactcgatgatgatgcaaggaatgatgaacagaaaattgcacaagacgaagtatctagtgtgctcaatcctcctattatgttcaaacatccaacccatttaataactccctctgagattttaatggctgcttcatcctctgagaattcaaatccaattgacagcaacacagagggggatgcaaaaatccaagatgttcttgttaacagtgatgtgggtaatcctgaggtggaagttaaggttgtgggtgaaaccagaactactcaaatcgatgaatttggctctcaacgagaactccaaaatgttgtttcagaaaataaggagaagttcttttgctcccaggcatcagatcttggaattgagatggcccgggattgctgtgcaatatcatcagaatcttatattacagatgaagcccggcaaggtgacggtgccagcatgtcagaaccactagcccagcctcattctggagaggaagaccaggatctctctacaaaagatgtatctgggtcagctactgccacaaccacatcacaaacaccaaatgcaaagtcgagaaaacagaaatggaaaaatatgcaagcatcaggtccatcttccccatcaccaggtctgctcaatgcagtagagtcctccagtgaagcaggtgggagtgcaagtcccccctccggagaagttgcatttcctcaaattatggccatgcaggatatgatgaatcagctaatgactatgcaaaaagaattgcaaaagcagatgacaatgatggttaccgtcccaattacaaaggaaggcaaacgattagaggcggctctcggtcggagtatggagaaggctgtaaaagccaataatgatgctctgtgggctcggtttcaagaagagaacgcaaagaatgagaaattattgcgagatcgcactcaacaagtaactagtttgatcaataactttgtgaccaaggactttccagtgatgttagagaaaacggtaaaaaaagaaatagctgctgttggaccagctgttgttcgtgcaatcactccagctatggagaaaacaatacctttggctatatctgattgctttcagaggggagtgggagataaagcagttaatcaattggaaaaatcagttaactcaaaacttgaagctactgtatccaggcaaatccaggcgcagtttcaaacatcgggtaaacaagctcttcaggatgctctcaagtctagcatggaagcgtcagtggtacctgcctttgagaagtcatgtaaagccatgtttgagcaagtagatgccacattccagaaaggaatgattgaacatgcaactgtggctcagcagcattttgagtctgcacattcgccgttggcccatgctttaagggaagctatcagctccgcatcatcagtgactcaaactctaagtggagaactggctgatggtcaacgtaagttagtagctcttgcagctgcacggggaaactcaagtgcggtaaatcccctagtcactcaactaaccaatggacctttgggtggtctccatgagaaggttgaggtgcctttggatccaacaaaggagctgtcaaggttggtaactgaacgcaagtatgaggaggctttcacaggtgctctgcaaagaagtgatgttggcattgtatcatggttatgtgctcaggttgatcttcatgggatactgttgctgcaacctgttcctctgagccaaggatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

1310

Amino Acids

141.59

Weight (kDa)

5.51

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1391
AarI CACCTGC 1 cut(s) 2852
Acc16I TGCGCA 1 cut(s) 1949
Acc36I ACCTGC 2 cut(s) 2852, 3463
Acc65I GGTACC 1 cut(s) 3451
AccB1I GGYRCC 7 cut(s) 229, 443, 541, 2023, 2648, 3451, 3760
AccI GTMKAC 1 cut(s) 1346
AccIII TCCGGA 1 cut(s) 2885
AclWI GGATC 8 cut(s) 707, 720, 1130, 1143, 1958, 2709, 3764, 3777
AcoI YGGCCR 2 cut(s) 60, 2913
AcsI RAATTY 6 cut(s) 297, 927, 1670, 1819, 2362, 2492
AcuI CTGAAG 2 cut(s) 954, 3398
AcyI GRCGYC 3 cut(s) 5, 230, 444
AfaI GTAC 6 cut(s) 257, 955, 1311, 1486, 2165, 3453
AhlI ACTAGT 2 cut(s) 1913, 3143
AjnI CCWGG 7 cut(s) 120, 360, 2556, 2697, 2824, 3368, 3378
AjuI GAANNNNNNNTTGG 2 cut(s) 1811, 1843
Alw21I GWGCWC 7 cut(s) 472, 835, 1511, 1620, 2283, 3835, 3877
Alw26I GTCTC 2 cut(s) 1309, 3746
Alw44I GTGCAC 1 cut(s) 1616
AlwI GGATC 8 cut(s) 707, 720, 1130, 1143, 1958, 2709, 3764, 3777
AlwNI CAGNNNCTG 1 cut(s) 2735
Ama87I CYCGRG 3 cut(s) 659, 1521, 2586
Aor13HI TCCGGA 1 cut(s) 2885
ApaI GGGCCC 2 cut(s) 207, 1403
ApaLI GTGCAC 1 cut(s) 1616
ApoI RAATTY 6 cut(s) 297, 927, 1670, 1819, 2362, 2492
ArsI GACNNNNNNTTYG 4 cut(s) 2753, 2785, 3770, 3802
Asp700I GAANNNNTTC 1 cut(s) 1014
Asp718I GGTACC 1 cut(s) 3451
AspA2I CCTAGG 1 cut(s) 2084
AspLEI GCGC 4 cut(s) 232, 446, 1950, 3385
AvaI CYCGRG 3 cut(s) 659, 1521, 2586
AvaII GGWCC 7 cut(s) 514, 938, 1174, 1428, 2807, 3224, 3728
AvrII CCTAGG 1 cut(s) 2084
AxyI CCTNAGG 1 cut(s) 2442
BaeGI GKGCMC 4 cut(s) 207, 546, 1403, 1620
BalI TGGCCA 2 cut(s) 62, 2915
BamHI GGATCC 3 cut(s) 712, 1135, 3769
BanI GGYRCC 7 cut(s) 229, 443, 541, 2023, 2648, 3451, 3760
BanII GRGCYC 5 cut(s) 207, 835, 1403, 1511, 3082
BauI CACGAG 1 cut(s) 1023
BbsI GAAGAC 1 cut(s) 2700
Bbv12I GWGCWC 7 cut(s) 472, 835, 1511, 1620, 2283, 3835, 3877
BbvCI CCTCAGC 3 cut(s) 270, 717, 1131
BceAI ACGGC 5 cut(s) 217, 243, 926, 1598, 3553
BcgI CGANNNNNNTGC 2 cut(s) 2213, 2247
BciT130I CCWGG 7 cut(s) 122, 362, 2558, 2699, 2826, 3370, 3380
BciVI GTATCC 3 cut(s) 1950, 3376, 3888
BclI TGATCA 3 cut(s) 1375, 2134, 3150
BcoDI GTCTC 2 cut(s) 1309, 3746
BcuI ACTAGT 2 cut(s) 1913, 3143
BfaI CTAG 9 cut(s) 485, 891, 1914, 2085, 2274, 2669, 3144, 3432, 3707
BfoI RGCGCY 2 cut(s) 233, 447
BfuAI ACCTGC 2 cut(s) 2852, 3463
BfuI GTATCC 3 cut(s) 1950, 3376, 3888
BglII AGATCT 4 cut(s) 818, 1275, 1422, 2566
BlnI CCTAGG 1 cut(s) 2084
BlpI GCTNAGC 1 cut(s) 3540
BmcAI AGTACT 2 cut(s) 1311, 2165
Bme18I GGWCC 7 cut(s) 514, 938, 1174, 1428, 2807, 3224, 3728
BmeT110I CYCGRG 3 cut(s) 659, 1521, 2586
BmrI ACTGGG 2 cut(s) 1455, 1713
BmuI ACTGGG 2 cut(s) 1455, 1713
BpiI GAAGAC 1 cut(s) 2700
BplI GAGNNNNNCTC 2 cut(s) 1498, 1530
BpmI CTGGAG 5 cut(s) 388, 463, 2706, 2836, 3234
Bpu10I CCTNAGC 4 cut(s) 270, 717, 1131, 3876
Bpu1102I GCTNAGC 1 cut(s) 3540
BpuEI CTTGAG 4 cut(s) 294, 1954, 3410, 3673
Bsa29I ATCGAT 1 cut(s) 2487
BsaHI GRCGYC 3 cut(s) 5, 230, 444
BsaI GGTCTC 2 cut(s) 1309, 3746
BsaWI WCCGGW 2 cut(s) 2026, 2885
BsaXI ACNNNNNCTCC 4 cut(s) 2496, 2526, 2860, 2890
Bse1I ACTGG 8 cut(s) 253, 480, 1461, 1708, 1845, 2853, 3179, 3642
Bse21I CCTNAGG 1 cut(s) 2442
Bse3DI GCAATG 1 cut(s) 381
BseAI TCCGGA 1 cut(s) 2885
BseBI CCWGG 7 cut(s) 122, 362, 2558, 2699, 2826, 3370, 3380
BseCI ATCGAT 1 cut(s) 2487
BseMI GCAATG 1 cut(s) 381
BseNI ACTGG 8 cut(s) 253, 480, 1461, 1708, 1845, 2853, 3179, 3642
BseRI GAGGAG 1 cut(s) 3830
BseSI GKGCMC 4 cut(s) 207, 546, 1403, 1620
BseYI CCCAGC 2 cut(s) 108, 2673
BsgI GTGCAG 4 cut(s) 1947, 2202, 3543, 3660
Bsh1285I CGRYCG 2 cut(s) 338, 3034
BshNI GGYRCC 7 cut(s) 229, 443, 541, 2023, 2648, 3451, 3760
BshVI ATCGAT 1 cut(s) 2487
BsiEI CGRYCG 2 cut(s) 338, 3034
BsiHKAI GWGCWC 7 cut(s) 472, 835, 1511, 1620, 2283, 3835, 3877
BsiHKCI CYCGRG 3 cut(s) 659, 1521, 2586
BslFI GGGAC 5 cut(s) 500, 1106, 1720, 2862, 2975
BsmAI GTCTC 2 cut(s) 1309, 3746
BsmFI GGGAC 5 cut(s) 500, 1106, 1720, 2862, 2975
BsmI GAATGC 3 cut(s) 588, 1535, 1606
Bso31I GGTCTC 2 cut(s) 1309, 3746
BsoBI CYCGRG 3 cut(s) 659, 1521, 2586
Bsp120I GGGCCC 2 cut(s) 203, 1399
Bsp13I TCCGGA 1 cut(s) 2885
Bsp1720I GCTNAGC 1 cut(s) 3540
BspDI ATCGAT 1 cut(s) 2487
BspEI TCCGGA 1 cut(s) 2885
BspMI ACCTGC 2 cut(s) 2852, 3463
BspPI GGATC 8 cut(s) 707, 720, 1130, 1143, 1958, 2709, 3764, 3777
BspQI GCTCTTC 1 cut(s) 3417
BspT107I GGYRCC 7 cut(s) 229, 443, 541, 2023, 2648, 3451, 3760
BspTNI GGTCTC 2 cut(s) 1309, 3746
BsrDI GCAATG 1 cut(s) 381
BsrI ACTGG 8 cut(s) 253, 480, 1461, 1708, 1845, 2853, 3179, 3642
BssNI GRCGYC 3 cut(s) 5, 230, 444
BssSI CACGAG 1 cut(s) 1023
BssT1I CCWWGG 3 cut(s) 2084, 3168, 3925
Bst2BI CACGAG 1 cut(s) 1023
Bst2UI CCWGG 7 cut(s) 122, 362, 2558, 2699, 2826, 3370, 3380
Bst6I CTCTTC 4 cut(s) 555, 2076, 3087, 3417
BstACI GRCGYC 3 cut(s) 5, 230, 444
BstC8I GCNNGC 7 cut(s) 611, 1451, 1570, 1641, 2217, 2653, 2799
BstEII GGTNACC 2 cut(s) 2144, 2983
BstH2I RGCGCY 2 cut(s) 233, 447
BstHHI GCGC 4 cut(s) 232, 446, 1950, 3385
BstMAI GTCTC 2 cut(s) 1309, 3746
BstMCI CGRYCG 2 cut(s) 338, 3034
BstNI CCWGG 7 cut(s) 122, 362, 2558, 2699, 2826, 3370, 3380
BstNSI RCATGY 2 cut(s) 2659, 3530
BstPI GGTNACC 2 cut(s) 2144, 2983
BstSLI GKGCMC 4 cut(s) 207, 546, 1403, 1620
BstV2I GAAGAC 1 cut(s) 2700
BstX2I RGATCY 8 cut(s) 712, 818, 1135, 1275, 1422, 2566, 2701, 3769
BstXI CCANNNNNNTGG 3 cut(s) 1184, 1243, 1654
BstYI RGATCY 8 cut(s) 712, 818, 1135, 1275, 1422, 2566, 2701, 3769
Bsu15I ATCGAT 1 cut(s) 2487
Bsu36I CCTNAGG 1 cut(s) 2442
BsuI GTATCC 3 cut(s) 1950, 3376, 3888
BsuTUI ATCGAT 1 cut(s) 2487
BtsI GCAGTG 3 cut(s) 807, 1950, 2137
BveI ACCTGC 2 cut(s) 2852, 3463
Cac8I GCNNGC 7 cut(s) 611, 1451, 1570, 1641, 2217, 2653, 2799
CaiI CAGNNNCTG 1 cut(s) 2735
CfoI GCGC 4 cut(s) 232, 446, 1950, 3385
Cfr9I CCCGGG 2 cut(s) 659, 2586
ClaI ATCGAT 1 cut(s) 2487
CseI GACGC 1 cut(s) 3432
CsiI ACCWGGT 1 cut(s) 2824
Csp6I GTAC 6 cut(s) 256, 954, 1310, 1485, 2164, 3452
CviQI GTAC 6 cut(s) 256, 954, 1310, 1485, 2164, 3452
DinI GGCGCC 2 cut(s) 231, 445
DraI TTTAAA 1 cut(s) 73
EaeI YGGCCR 2 cut(s) 60, 2913
Eam1104I CTCTTC 4 cut(s) 555, 2076, 3087, 3417
EarI CTCTTC 4 cut(s) 555, 2076, 3087, 3417
EciI GGCGGA 1 cut(s) 15
Ecl136II GAGCTC 2 cut(s) 833, 1509
Eco130I CCWWGG 3 cut(s) 2084, 3168, 3925
Eco24I GRGCYC 5 cut(s) 207, 835, 1403, 1511, 3082
Eco31I GGTCTC 2 cut(s) 1309, 3746
Eco47I GGWCC 7 cut(s) 514, 938, 1174, 1428, 2807, 3224, 3728
Eco53kI GAGCTC 2 cut(s) 833, 1509
Eco57I CTGAAG 2 cut(s) 954, 3398
Eco81I CCTNAGG 1 cut(s) 2442
Eco88I CYCGRG 3 cut(s) 659, 1521, 2586
Eco91I GGTNACC 2 cut(s) 2144, 2983
EcoICRI GAGCTC 2 cut(s) 833, 1509
EcoO109I RGGNCCY 2 cut(s) 124, 204
EcoO65I GGTNACC 2 cut(s) 2144, 2983
EcoRI GAATTC 2 cut(s) 1819, 2362
EcoRII CCWGG 7 cut(s) 120, 360, 2556, 2697, 2824, 3368, 3378
EcoT14I CCWWGG 3 cut(s) 2084, 3168, 3925
EcoT22I ATGCAT 1 cut(s) 1537
EcoT38I GRGCYC 5 cut(s) 207, 835, 1403, 1511, 3082
EgeI GGCGCC 2 cut(s) 231, 445
EheI GGCGCC 2 cut(s) 231, 445
ErhI CCWWGG 3 cut(s) 2084, 3168, 3925
FalI AAGNNNNNCTT 6 cut(s) 897, 929, 1557, 1589, 2400, 2432
FaqI GGGAC 5 cut(s) 500, 1106, 1720, 2862, 2975
FauI CCCGC 2 cut(s) 363, 521
FbaI TGATCA 3 cut(s) 1375, 2134, 3150
FblI GTMKAC 1 cut(s) 1346
FriOI GRGCYC 5 cut(s) 207, 835, 1403, 1511, 3082
FspAI RTGCGCAY 1 cut(s) 1949
FspBI CTAG 9 cut(s) 485, 891, 1914, 2085, 2274, 2669, 3144, 3432, 3707
FspI TGCGCA 1 cut(s) 1949
GlaI GCGC 4 cut(s) 231, 445, 1949, 3384
GsaI CCCAGC 2 cut(s) 112, 2677
GsuI CTGGAG 5 cut(s) 388, 463, 2706, 2836, 3234
HaeII RGCGCY 2 cut(s) 233, 447
HgaI GACGC 1 cut(s) 3432
HhaI GCGC 4 cut(s) 232, 446, 1950, 3385
Hin1I GRCGYC 3 cut(s) 5, 230, 444
Hin6I GCGC 4 cut(s) 230, 444, 1948, 3383
HinP1I GCGC 4 cut(s) 230, 444, 1948, 3383
HincII GTYRAC 5 cut(s) 1878, 2173, 2422, 3343, 3650
HindII GTYRAC 5 cut(s) 1878, 2173, 2422, 3343, 3650
HindIII AAGCTT 1 cut(s) 1160
HpaI GTTAAC 2 cut(s) 2422, 3343
HpyCH4IV ACGT 1 cut(s) 3652
HpySE526I ACGT 1 cut(s) 3652
Hsp92I GRCGYC 3 cut(s) 5, 230, 444
HspAI GCGC 4 cut(s) 230, 444, 1948, 3383
KasI GGCGCC 2 cut(s) 229, 443
Kpn2I TCCGGA 1 cut(s) 2885
KpnI GGTACC 1 cut(s) 3455
Ksp22I TGATCA 3 cut(s) 1375, 2134, 3150
KspAI GTTAAC 2 cut(s) 2422, 3343
LguI GCTCTTC 1 cut(s) 3417
LmnI GCTCC 7 cut(s) 330, 370, 475, 1366, 2558, 3605, 3781
MabI ACCWGGT 1 cut(s) 2824
MaeI CTAG 9 cut(s) 485, 891, 1914, 2085, 2274, 2669, 3144, 3432, 3707
MaeII ACGT 1 cut(s) 3652
MfeI CAATTG 2 cut(s) 2373, 3326
MflI RGATCY 8 cut(s) 712, 818, 1135, 1275, 1422, 2566, 2701, 3769
MlsI TGGCCA 2 cut(s) 62, 2915
MluNI TGGCCA 2 cut(s) 62, 2915
Mly113I GGCGCC 2 cut(s) 230, 444
MlyI GAGTC 6 cut(s) 1481, 1533, 2089, 2855, 3563, 3610
MmeI TCCRAC 6 cut(s) 352, 1045, 2333, 3014, 3202, 3797
Mox20I TGGCCA 2 cut(s) 62, 2915
Mph1103I ATGCAT 1 cut(s) 1537
MroI TCCGGA 1 cut(s) 2885
MroXI GAANNNNTTC 1 cut(s) 1014
MscI TGGCCA 2 cut(s) 62, 2915
MslI CAYNNNNRTG 5 cut(s) 854, 1480, 1652, 2142, 3868
Msp20I TGGCCA 2 cut(s) 62, 2915
MspA1I CMGCKG 6 cut(s) 322, 334, 679, 721, 3230, 3674
MunI CAATTG 2 cut(s) 2373, 3326
Mva1269I GAATGC 3 cut(s) 588, 1535, 1606
MvaI CCWGG 7 cut(s) 122, 362, 2558, 2699, 2826, 3370, 3380
NarI GGCGCC 2 cut(s) 230, 444
NmeAIII GCCGAG 2 cut(s) 612, 895
NsbI TGCGCA 1 cut(s) 1949
NsiI ATGCAT 1 cut(s) 1537
NspI RCATGY 2 cut(s) 2659, 3530
PaeR7I CTCGAG 1 cut(s) 1521
PaqCI CACCTGC 1 cut(s) 2852
PciSI GCTCTTC 1 cut(s) 3417
PctI GAATGC 3 cut(s) 588, 1535, 1606
PdmI GAANNNNTTC 1 cut(s) 1014
PfeI GAWTC 6 cut(s) 450, 562, 1841, 2003, 2612, 2932
PleI GAGTC 6 cut(s) 1480, 1532, 2088, 2854, 3562, 3610
PluTI GGCGCC 2 cut(s) 233, 447
PpsI GAGTC 6 cut(s) 1480, 1532, 2088, 2854, 3562, 3610
PsiI TTATAA 1 cut(s) 1391
Psp124BI GAGCTC 2 cut(s) 835, 1511
Psp6I CCWGG 7 cut(s) 120, 360, 2556, 2697, 2824, 3368, 3378
PspEI GGTNACC 2 cut(s) 2144, 2983
PspFI CCCAGC 2 cut(s) 108, 2673
PspGI CCWGG 7 cut(s) 120, 360, 2556, 2697, 2824, 3368, 3378
PspOMI GGGCCC 2 cut(s) 203, 1399
PspXI VCTCGAGB 1 cut(s) 1521
PstNI CAGNNNCTG 1 cut(s) 2735
PsuI RGATCY 8 cut(s) 712, 818, 1135, 1275, 1422, 2566, 2701, 3769
PvuII CAGCTG 5 cut(s) 322, 679, 721, 3230, 3674
RsaI GTAC 6 cut(s) 257, 955, 1311, 1486, 2165, 3453
RsaNI GTAC 6 cut(s) 256, 954, 1310, 1485, 2164, 3452
RseI CAYNNNNRTG 5 cut(s) 854, 1480, 1652, 2142, 3868
SacI GAGCTC 2 cut(s) 835, 1511
SapI GCTCTTC 1 cut(s) 3417
ScaI AGTACT 2 cut(s) 1311, 2165
SchI GAGTC 6 cut(s) 1481, 1533, 2089, 2855, 3563, 3610
SexAI ACCWGGT 1 cut(s) 2824
SfoI GGCGCC 2 cut(s) 231, 445
Sfr274I CTCGAG 1 cut(s) 1521
SinI GGWCC 7 cut(s) 514, 938, 1174, 1428, 2807, 3224, 3728
SlaI CTCGAG 1 cut(s) 1521
SmaI CCCGGG 2 cut(s) 661, 2588
SmiMI CAYNNNNRTG 5 cut(s) 854, 1480, 1652, 2142, 3868
SmlI CTYRAG 5 cut(s) 309, 1521, 1933, 3425, 3688
SmoI CTYRAG 5 cut(s) 309, 1521, 1933, 3425, 3688
SpeI ACTAGT 2 cut(s) 1913, 3143
SspDI GGCGCC 2 cut(s) 229, 443
SspI AATATT 1 cut(s) 787
SspMI CTAG 9 cut(s) 485, 891, 1914, 2085, 2274, 2669, 3144, 3432, 3707
SstI GAGCTC 2 cut(s) 835, 1511
StyI CCWWGG 3 cut(s) 2084, 3168, 3925
TaiI ACGT 1 cut(s) 3655
TaqI TCGA 9 cut(s) 54, 536, 580, 829, 1522, 1527, 2223, 2487, 2771
TaqII GACCGA 2 cut(s) 502, 3020
TatI WGTACW 2 cut(s) 1309, 2163
TfiI GAWTC 6 cut(s) 450, 562, 1841, 2003, 2612, 2932
TspDTI ATGAA 9 cut(s) 960, 1007, 2198, 2259, 2340, 2505, 2643, 2945, 3878
TspMI CCCGGG 2 cut(s) 659, 2586
VneI GTGCAC 1 cut(s) 1616
VpaK11BI GGWCC 7 cut(s) 514, 938, 1174, 1428, 2807, 3224, 3728
XapI RAATTY 6 cut(s) 297, 927, 1670, 1819, 2362, 2492
XbaI TCTAGA 1 cut(s) 484
XceI RCATGY 2 cut(s) 2659, 3530
XcmI CCANNNNNNNNNTGG 6 cut(s) 358, 553, 1029, 1996, 2681, 3730
XhoI CTCGAG 1 cut(s) 1521
XmaI CCCGGG 2 cut(s) 659, 2586
XmaJI CCTAGG 1 cut(s) 2084
XmiI GTMKAC 1 cut(s) 1346
XmnI GAANNNNTTC 1 cut(s) 1014
XspI CTAG 9 cut(s) 485, 891, 1914, 2085, 2274, 2669, 3144, 3432, 3707
ZrmI AGTACT 2 cut(s) 1311, 2165
Zsp2I ATGCAT 1 cut(s) 1537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.