Rmu_sc0008380.1_g000006

Homocysteine s-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008380.1
OG0000324
Physical Location & Seq
Forward (+)
32459 .. 34237
1779 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008380.1_g000006.1.cds

Sequence Viewer

Length: 462 bp
atggtcagaccaagcaatgggtgttgtaaggttaccagcaaacatacactgatataccttgatagtggcgagactcttctgatggtcagagcaagcaagggatgtgatctaatggggtttgatcaagagtttgcggcaaagaagttccggctttggaaaagtatcttgcttcaaggtgatgcggcaggtgtgctgaacttcttgaggaagaaggaattggttttcattgtttctgaggatggaattcatgctgtaacaagcgaaccaatcgtgatatacaccaacagtggtgagaccatttgctggtcggagcaagcaatggggggtaaagtctccttctatatgaatgcacagtggcgtgaggctggggcttccctgttcggaggctgctgcagaacaactccaaatacgataagggcaatatctaaggctctttccaacaagctggtcctctgcagttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00270 ko01100 ko01110 map00270 map01100 map01110
Pfam Domains
Protein Families
S-methyl_trans

Protein Analysis

153

Amino Acids

16.78

Weight (kDa)

8.88

Isoelectric Point (pI)

29.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 176
Acc36I ACCTGC 1 cut(s) 176
AccB7I CCANNNNNTGG 2 cut(s) 17, 303
AciI CCGC 2 cut(s) 134, 182
AcsI RAATTY 1 cut(s) 243
AfiI CCNNNNNNNGG 2 cut(s) 17, 303
AgsI TTSAA 1 cut(s) 173
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AluBI AGCT 1 cut(s) 445
AluI AGCT 1 cut(s) 445
Alw26I GTCTC 3 cut(s) 65, 287, 337
ApeKI GCWGC 2 cut(s) 387, 390
ApoI RAATTY 1 cut(s) 243
AspS9I GGNCC 1 cut(s) 448
AsuHPI GGTGA 2 cut(s) 188, 302
AvaII GGWCC 1 cut(s) 448
BbvI GCAGC 2 cut(s) 374, 377
BccI CCATC 2 cut(s) 76, 233
BclI TGATCA 1 cut(s) 121
BcoDI GTCTC 3 cut(s) 65, 287, 337
BfmI CTRYAG 2 cut(s) 391, 454
BfuAI ACCTGC 1 cut(s) 176
BisI GCNGC 4 cut(s) 135, 183, 388, 391
BlsI GCNGC 4 cut(s) 136, 184, 389, 392
Bme18I GGWCC 1 cut(s) 448
BmgT120I GGNCC 1 cut(s) 448
BmsI GCATC 1 cut(s) 169
BpuEI CTTGAG 1 cut(s) 223
BsaI GGTCTC 1 cut(s) 287
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 303
Bse3DI GCAATG 2 cut(s) 22, 324
BseGI GGATG 2 cut(s) 107, 244
BseLI CCNNNNNNNGG 2 cut(s) 17, 303
BseMI GCAATG 2 cut(s) 22, 324
BseMII CTCAG 1 cut(s) 225
BseXI GCAGC 2 cut(s) 374, 377
BseYI CCCAGC 1 cut(s) 365
BsiSI CCGG 1 cut(s) 148
BslI CCNNNNNNNGG 2 cut(s) 17, 303
BsmAI GTCTC 3 cut(s) 65, 287, 337
BsmI GAATGC 1 cut(s) 352
Bso31I GGTCTC 1 cut(s) 287
Bsp143I GATC 2 cut(s) 106, 121
BspACI CCGC 2 cut(s) 134, 182
BspCNI CTCAG 1 cut(s) 226
BspMAI CTGCAG 2 cut(s) 395, 458
BspMI ACCTGC 1 cut(s) 176
BspTNI GGTCTC 1 cut(s) 287
BsrDI GCAATG 2 cut(s) 22, 324
BssMI GATC 2 cut(s) 106, 121
Bst4CI ACNGT 2 cut(s) 287, 354
Bst6I CTCTTC 1 cut(s) 81
BstC8I GCNNGC 2 cut(s) 94, 315
BstDEI CTNAG 2 cut(s) 234, 426
BstEII GGTNACC 1 cut(s) 31
BstF5I GGATG 2 cut(s) 107, 244
BstKTI GATC 2 cut(s) 109, 124
BstMAI GTCTC 3 cut(s) 65, 287, 337
BstMBI GATC 2 cut(s) 106, 121
BstPI GGTNACC 1 cut(s) 31
BstSFI CTRYAG 2 cut(s) 391, 454
BstV1I GCAGC 2 cut(s) 374, 377
BstXI CCANNNNNNTGG 1 cut(s) 445
BtsCI GGATG 2 cut(s) 107, 244
BtsIMutI CAGTG 3 cut(s) 47, 292, 359
BveI ACCTGC 1 cut(s) 176
Cac8I GCNNGC 2 cut(s) 94, 315
Cfr13I GGNCC 1 cut(s) 448
CviAII CATG 1 cut(s) 248
CviJI RGCY 6 cut(s) 151, 365, 371, 387, 431, 445
CviKI_1 RGCY 6 cut(s) 151, 365, 371, 387, 431, 445
DdeI CTNAG 2 cut(s) 234, 426
DpnI GATC 2 cut(s) 108, 123
DpnII GATC 2 cut(s) 106, 121
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco31I GGTCTC 1 cut(s) 287
Eco47I GGWCC 1 cut(s) 448
Eco91I GGTNACC 1 cut(s) 31
EcoO65I GGTNACC 1 cut(s) 31
EcoRI GAATTC 1 cut(s) 243
FaeI CATG 1 cut(s) 251
FaiI YATR 6 cut(s) 45, 55, 249, 277, 342, 344
FatI CATG 1 cut(s) 247
FbaI TGATCA 1 cut(s) 121
Fnu4HI GCNGC 4 cut(s) 135, 183, 388, 391
FokI GGATG 2 cut(s) 114, 251
Fsp4HI GCNGC 4 cut(s) 135, 183, 388, 391
GluI GCNGC 4 cut(s) 135, 183, 388, 391
GsaI CCCAGC 1 cut(s) 369
HapII CCGG 1 cut(s) 148
Hin1II CATG 1 cut(s) 251
HinfI GANTC 1 cut(s) 73
HpaII CCGG 1 cut(s) 148
HphI GGTGA 2 cut(s) 188, 302
Hpy188I TCNGA 6 cut(s) 8, 81, 89, 235, 310, 383
Hpy188III TCNNGA 3 cut(s) 125, 202, 271
HpyAV CCTTC 2 cut(s) 205, 346
HpyCH4III ACNGT 2 cut(s) 287, 354
HpyCH4V TGCA 3 cut(s) 350, 393, 456
HpyF3I CTNAG 2 cut(s) 234, 426
Hsp92II CATG 1 cut(s) 251
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 2 cut(s) 106, 121
LmnI GCTCC 1 cut(s) 310
LpnPI CCDG 7 cut(s) 49, 161, 171, 289, 351, 389, 431
Lsp1109I GCAGC 2 cut(s) 374, 377
LweI GCATC 1 cut(s) 169
MaeIII GTNAC 2 cut(s) 31, 253
MalI GATC 2 cut(s) 108, 123
MboI GATC 2 cut(s) 106, 121
MboII GAAGA 2 cut(s) 68, 220
MluCI AATT 2 cut(s) 215, 243
MlyI GAGTC 1 cut(s) 67
MmeI TCCRAC 2 cut(s) 288, 462
MnlI CCTC 5 cut(s) 198, 229, 355, 377, 461
MseI TTAA 1 cut(s) 460
MspI CCGG 1 cut(s) 148
Mva1269I GAATGC 1 cut(s) 352
NdeII GATC 2 cut(s) 106, 121
NlaIII CATG 1 cut(s) 251
PaqCI CACCTGC 1 cut(s) 176
PctI GAATGC 1 cut(s) 352
PflMI CCANNNNNTGG 2 cut(s) 17, 303
PkrI GCNGC 4 cut(s) 136, 184, 389, 392
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
PspEI GGTNACC 1 cut(s) 31
PspFI CCCAGC 1 cut(s) 365
PspPI GGNCC 1 cut(s) 448
PstI CTGCAG 2 cut(s) 395, 458
SaqAI TTAA 1 cut(s) 460
SatI GCNGC 4 cut(s) 135, 183, 388, 391
Sau3AI GATC 2 cut(s) 106, 121
Sau96I GGNCC 1 cut(s) 448
SchI GAGTC 1 cut(s) 67
SetI ASST 5 cut(s) 33, 60, 178, 190, 447
SfaNI GCATC 1 cut(s) 169
SfcI CTRYAG 2 cut(s) 391, 454
SinI GGWCC 1 cut(s) 448
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
Sse9I AATT 2 cut(s) 215, 243
SsiI CCGC 2 cut(s) 134, 182
TaaI ACNGT 2 cut(s) 287, 354
TasI AATT 2 cut(s) 215, 243
TauI GCSGC 2 cut(s) 137, 185
Tru1I TTAA 1 cut(s) 460
Tru9I TTAA 1 cut(s) 460
TscAI CASTG 3 cut(s) 54, 292, 359
TseI GCWGC 2 cut(s) 387, 390
TspDTI ATGAA 3 cut(s) 214, 236, 359
TspRI CASTG 3 cut(s) 54, 292, 359
Van91I CCANNNNNTGG 2 cut(s) 17, 303
VpaK11BI GGWCC 1 cut(s) 448
XapI RAATTY 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.