Rmu_sc0002604.1_g000010

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002604.1
OG0000324
Physical Location & Seq
Forward (+)
29870 .. 31381
1512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002604.1_g000010.1.cds

Sequence Viewer

Length: 450 bp
atggtcgtttgtagtcttggccctaaaagggatccgtttcgtcccagggatgatgatgaagacatcttggaattgagatggcccgggattgatgtggcatgtgcaatatcctcagaatcttatattacagatgaagctcggcaaggtgatagtgccagcatgtcagaaccactagcccagcctcattctggagaggaagaccaggatcgctctacaaaagatgtatctgggtcagctaccgcgacaaccacgtcacaactacaaacaccaaatgcaaagtcgagaaaacataaatggaaaagtacgcaagcatcaagtccatcttccccatcaccaggtgtgctcaactcaatggagccctccaccaataaagcagatgggagttcaagtcccccctccggagaagctacatttcctcaaattatggccatgcaggatatgatgaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

149

Amino Acids

15.97

Weight (kDa)

4.66

Isoelectric Point (pI)

79.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 250
AccII CGCG 1 cut(s) 242
AccIII TCCGGA 1 cut(s) 398
AciI CCGC 1 cut(s) 240
AclWI GGATC 3 cut(s) 26, 39, 213
AcoI YGGCCR 1 cut(s) 426
AdeI CACNNNGTG 1 cut(s) 338
AfaI GTAC 1 cut(s) 304
AfiI CCNNNNNNNGG 4 cut(s) 28, 188, 335, 398
AgsI TTSAA 1 cut(s) 387
AjiI CACGTC 1 cut(s) 252
AjnI CCWGG 3 cut(s) 44, 201, 334
AluBI AGCT 3 cut(s) 137, 236, 407
AluI AGCT 3 cut(s) 137, 236, 407
Alw21I GWGCWC 1 cut(s) 345
AlwI GGATC 3 cut(s) 26, 39, 213
Ama87I CYCGRG 1 cut(s) 83
Aor13HI TCCGGA 1 cut(s) 398
AoxI GGCC 3 cut(s) 19, 80, 426
ArsI GACNNNNNNTTYG 2 cut(s) 263, 295
AspS9I GGNCC 2 cut(s) 20, 81
AsuC2I CCSGG 2 cut(s) 84, 85
AsuHPI GGTGA 2 cut(s) 158, 324
AvaI CYCGRG 1 cut(s) 83
BalI TGGCCA 1 cut(s) 428
BamHI GGATCC 1 cut(s) 31
BanII GRGCYC 1 cut(s) 360
BbsI GAAGAC 2 cut(s) 66, 204
Bbv12I GWGCWC 1 cut(s) 345
BccI CCATC 4 cut(s) 72, 328, 337, 371
BciT130I CCWGG 3 cut(s) 46, 203, 336
BcnI CCSGG 2 cut(s) 84, 85
BfaI CTAG 1 cut(s) 173
Bme1390I CCNGG 5 cut(s) 46, 84, 85, 203, 336
BmeT110I CYCGRG 1 cut(s) 83
BmgBI CACGTC 1 cut(s) 252
BmgT120I GGNCC 2 cut(s) 20, 81
BmiI GGNNCC 2 cut(s) 33, 357
BmrFI CCNGG 5 cut(s) 46, 84, 85, 203, 336
BmsI GCATC 1 cut(s) 320
BpiI GAAGAC 2 cut(s) 66, 204
BpmI CTGGAG 1 cut(s) 210
BpuMI CCSGG 2 cut(s) 84, 85
BsaJI CCNNGG 3 cut(s) 44, 45, 83
BsaWI WCCGGW 1 cut(s) 398
BsaXI ACNNNNNCTCC 2 cut(s) 373, 403
Bsc4I CCNNNNNNNGG 4 cut(s) 28, 188, 335, 398
BseAI TCCGGA 1 cut(s) 398
BseBI CCWGG 3 cut(s) 46, 203, 336
BseDI CCNNGG 3 cut(s) 44, 45, 83
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 4 cut(s) 28, 188, 335, 398
BseMII CTCAG 1 cut(s) 126
BseYI CCCAGC 1 cut(s) 177
Bsh1236I CGCG 1 cut(s) 242
BshFI GGCC 3 cut(s) 21, 82, 428
BsiHKAI GWGCWC 1 cut(s) 345
BsiHKCI CYCGRG 1 cut(s) 83
BsiSI CCGG 2 cut(s) 84, 399
BslFI GGGAC 2 cut(s) 27, 375
BslI CCNNNNNNNGG 4 cut(s) 28, 188, 335, 398
BsmFI GGGAC 2 cut(s) 27, 375
BsnI GGCC 3 cut(s) 21, 82, 428
BsoBI CYCGRG 1 cut(s) 83
Bsp1286I GDGCHC 2 cut(s) 345, 360
Bsp13I TCCGGA 1 cut(s) 398
Bsp143I GATC 2 cut(s) 31, 205
BspACI CCGC 1 cut(s) 240
BspANI GGCC 3 cut(s) 21, 82, 428
BspCNI CTCAG 1 cut(s) 125
BspEI TCCGGA 1 cut(s) 398
BspFNI CGCG 1 cut(s) 242
BspLI GGNNCC 2 cut(s) 33, 357
BspPI GGATC 3 cut(s) 26, 39, 213
BssECI CCNNGG 3 cut(s) 44, 45, 83
BssMI GATC 2 cut(s) 31, 205
Bst2UI CCWGG 3 cut(s) 46, 203, 336
BstC8I GCNNGC 2 cut(s) 157, 309
BstDEI CTNAG 1 cut(s) 112
BstF5I GGATG 1 cut(s) 55
BstFNI CGCG 1 cut(s) 242
BstKTI GATC 2 cut(s) 34, 208
BstMBI GATC 2 cut(s) 31, 205
BstNI CCWGG 3 cut(s) 46, 203, 336
BstNSI RCATGY 2 cut(s) 102, 163
BstSCI CCNGG 5 cut(s) 44, 82, 83, 201, 334
BstUI CGCG 1 cut(s) 242
BstV2I GAAGAC 2 cut(s) 66, 204
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
BsuRI GGCC 3 cut(s) 21, 82, 428
BtrI CACGTC 1 cut(s) 252
BtsCI GGATG 1 cut(s) 55
Cac8I GCNNGC 2 cut(s) 157, 309
Cfr13I GGNCC 2 cut(s) 20, 81
Cfr9I CCCGGG 1 cut(s) 83
CsiI ACCWGGT 1 cut(s) 334
Csp6I GTAC 1 cut(s) 303
CviAII CATG 3 cut(s) 99, 160, 430
CviJI RGCY 9 cut(s) 21, 82, 137, 176, 181, 236, 358, 407, 428
CviKI_1 RGCY 9 cut(s) 21, 82, 137, 176, 181, 236, 358, 407, 428
CviQI GTAC 1 cut(s) 303
DdeI CTNAG 1 cut(s) 112
DpnI GATC 2 cut(s) 33, 207
DpnII GATC 2 cut(s) 31, 205
DraIII CACNNNGTG 1 cut(s) 338
DrdI GACNNNNNNGTC 1 cut(s) 250
DseDI GACNNNNNNGTC 1 cut(s) 250
EaeI YGGCCR 1 cut(s) 426
Eco24I GRGCYC 1 cut(s) 360
Eco88I CYCGRG 1 cut(s) 83
EcoRII CCWGG 3 cut(s) 44, 201, 334
EcoT38I GRGCYC 1 cut(s) 360
FaeI CATG 3 cut(s) 102, 163, 433
FaiI YATR 7 cut(s) 100, 123, 161, 291, 425, 431, 440
FalI AAGNNNNNCTT 2 cut(s) 307, 339
FaqI GGGAC 2 cut(s) 27, 375
FatI CATG 3 cut(s) 98, 159, 429
FokI GGATG 1 cut(s) 62
FriOI GRGCYC 1 cut(s) 360
FspBI CTAG 1 cut(s) 173
GsaI CCCAGC 1 cut(s) 181
GsuI CTGGAG 1 cut(s) 210
HaeIII GGCC 3 cut(s) 21, 82, 428
HapII CCGG 2 cut(s) 84, 399
Hin1II CATG 3 cut(s) 102, 163, 433
HinfI GANTC 1 cut(s) 116
HpaII CCGG 2 cut(s) 84, 399
HphI GGTGA 2 cut(s) 158, 324
Hpy188I TCNGA 2 cut(s) 115, 166
Hpy188III TCNNGA 3 cut(s) 189, 282, 399
HpyCH4IV ACGT 1 cut(s) 251
HpyCH4V TGCA 3 cut(s) 104, 275, 433
HpyF3I CTNAG 1 cut(s) 112
HpySE526I ACGT 1 cut(s) 251
Hsp92II CATG 3 cut(s) 102, 163, 433
Kpn2I TCCGGA 1 cut(s) 398
Kzo9I GATC 2 cut(s) 31, 205
LmnI GCTCC 1 cut(s) 355
LweI GCATC 1 cut(s) 320
MabI ACCWGGT 1 cut(s) 334
MaeI CTAG 1 cut(s) 173
MaeII ACGT 1 cut(s) 251
MaeIII GTNAC 1 cut(s) 252
MalI GATC 2 cut(s) 33, 207
MboI GATC 2 cut(s) 31, 205
MboII GAAGA 3 cut(s) 71, 209, 315
MflI RGATCY 1 cut(s) 31
MhlI GDGCHC 2 cut(s) 345, 360
MlsI TGGCCA 1 cut(s) 428
MluCI AATT 3 cut(s) 71, 420, 445
MluNI TGGCCA 1 cut(s) 428
MnlI CCTC 6 cut(s) 121, 187, 192, 370, 406, 426
Mox20I TGGCCA 1 cut(s) 428
MroI TCCGGA 1 cut(s) 398
MscI TGGCCA 1 cut(s) 428
Msp20I TGGCCA 1 cut(s) 428
MspI CCGG 2 cut(s) 84, 399
MspR9I CCNGG 5 cut(s) 46, 84, 85, 203, 336
MvaI CCWGG 3 cut(s) 46, 203, 336
MvnI CGCG 1 cut(s) 242
NciI CCSGG 2 cut(s) 84, 85
NdeII GATC 2 cut(s) 31, 205
NlaIII CATG 3 cut(s) 102, 163, 433
NlaIV GGNNCC 2 cut(s) 33, 357
NmeAIII GCCGAG 1 cut(s) 118
NmuCI GTSAC 1 cut(s) 252
NspI RCATGY 2 cut(s) 102, 163
PasI CCCWGGG 1 cut(s) 45
PfeI GAWTC 1 cut(s) 116
Psp6I CCWGG 3 cut(s) 44, 201, 334
PspFI CCCAGC 1 cut(s) 177
PspGI CCWGG 3 cut(s) 44, 201, 334
PspN4I GGNNCC 2 cut(s) 33, 357
PspPI GGNCC 2 cut(s) 20, 81
PsuI RGATCY 1 cut(s) 31
RsaI GTAC 1 cut(s) 304
RsaNI GTAC 1 cut(s) 303
Sau3AI GATC 2 cut(s) 31, 205
Sau96I GGNCC 2 cut(s) 20, 81
ScrFI CCNGG 5 cut(s) 46, 84, 85, 203, 336
SduI GDGCHC 2 cut(s) 345, 360
SetI ASST 6 cut(s) 139, 148, 238, 254, 340, 409
SexAI ACCWGGT 1 cut(s) 334
SfaNI GCATC 1 cut(s) 320
SmaI CCCGGG 1 cut(s) 85
Sse9I AATT 3 cut(s) 71, 420, 445
SsiI CCGC 1 cut(s) 240
SspMI CTAG 1 cut(s) 173
StyD4I CCNGG 5 cut(s) 44, 82, 83, 201, 334
TaiI ACGT 1 cut(s) 254
TaqI TCGA 1 cut(s) 281
TasI AATT 3 cut(s) 71, 420, 445
TfiI GAWTC 1 cut(s) 116
TseFI GTSAC 1 cut(s) 252
Tsp45I GTSAC 1 cut(s) 252
TspDTI ATGAA 2 cut(s) 72, 147
TspGWI ACGGA 1 cut(s) 24
TspMI CCCGGG 1 cut(s) 83
XceI RCATGY 2 cut(s) 102, 163
XcmI CCANNNNNNNNNTGG 1 cut(s) 185
XmaI CCCGGG 1 cut(s) 83
XspI CTAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.