Rmu_sc0010693.1_g000015

Enhancer of mRNA-decapping protein 4-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010693.1
Physical Location & Seq
Forward (+)
63402 .. 66390
2989 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010693.1_g000015.1.cds

Sequence Viewer

Length: 678 bp
atggagaaaacaataccttcgtctatatctgattgctttcagagaggagtgggagataaagcagttaatcaattggaaaaatcagttaactcaaaacttgaagttactgtatccaggcaaatcgaggcacagtttcaaacatcgggtaaacaagctcttcaggatgctctcaagtctagcatggaagcttcagtggtacctgcctttgagaagtcatgtaaagccatgtttgagcaagtagatgccacattccagaatggaatggttgaacatgcaactgtggctcagcagcattttaagtctgcacattcgccgttggcccatgctttaaggaatattggtggcagtcaaggctctgcaaatcacgtggaggccggcgcagagaattctggtggaatccatggcggccctgagatggttgagggtctcctgatggtactcgccatgagatccatggaagaagttgaagcacagcttctccaccatcggcaccgacctggatgcagggtattattagggggcaataaaatcagacgccggaatccggtcaccattccggtagccggattcgggattcctgtgaccggttgtcagattccggtgatcggtcgccggattccggtcatcggagtccgcggccaaccactagtcaccggagtccggcaaggtatcaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

225

Amino Acids

24.11

Weight (kDa)

9.38

Isoelectric Point (pI)

40.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 208
Acc65I GGTACC 1 cut(s) 196
AccB1I GGYRCC 2 cut(s) 196, 489
AccII CGCG 1 cut(s) 636
AciI CCGC 3 cut(s) 405, 634, 636
AclWI GGATC 1 cut(s) 444
AcoI YGGCCR 1 cut(s) 637
AcsI RAATTY 1 cut(s) 385
AcuI CTGAAG 2 cut(s) 143, 174
AcvI CACGTG 1 cut(s) 367
AcyI GRCGYC 1 cut(s) 535
AfaI GTAC 2 cut(s) 198, 438
AfiI CCNNNNNNNGG 9 cut(s) 415, 544, 563, 570, 584, 605, 619, 626, 660
AgeI ACCGGT 1 cut(s) 584
AgsI TTSAA 4 cut(s) 101, 137, 269, 467
AhdI GACNNNNNGTC 1 cut(s) 588
AhlI ACTAGT 1 cut(s) 646
AjnI CCWGG 2 cut(s) 113, 496
AluBI AGCT 3 cut(s) 155, 188, 475
AluI AGCT 3 cut(s) 155, 188, 475
Alw26I GTCTC 1 cut(s) 431
AlwI GGATC 1 cut(s) 444
AoxI GGCC 4 cut(s) 318, 372, 406, 637
ApeKI GCWGC 1 cut(s) 289
ApoI RAATTY 1 cut(s) 385
AsiGI ACCGGT 1 cut(s) 584
Asp718I GGTACC 1 cut(s) 196
AspLEI GCGC 1 cut(s) 380
AspS9I GGNCC 2 cut(s) 319, 407
AsuHPI GGTGA 3 cut(s) 541, 613, 643
BanI GGYRCC 2 cut(s) 196, 489
BbrPI CACGTG 1 cut(s) 367
BbvI GCAGC 1 cut(s) 301
BccI CCATC 3 cut(s) 409, 427, 492
BceAI ACGGC 1 cut(s) 298
BcgI CGANNNNNNTGC 2 cut(s) 483, 517
BciT130I CCWGG 2 cut(s) 115, 498
BciVI GTATCC 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 431
BcuI ACTAGT 1 cut(s) 646
BfaI CTAG 2 cut(s) 177, 647
BfuAI ACCTGC 1 cut(s) 208
BfuI GTATCC 1 cut(s) 121
BisI GCNGC 3 cut(s) 290, 406, 637
BlpI GCTNAGC 1 cut(s) 285
BlsI GCNGC 3 cut(s) 291, 407, 638
Bme1390I CCNGG 2 cut(s) 115, 498
BmeRI GACNNNNNGTC 1 cut(s) 588
BmgT120I GGNCC 2 cut(s) 319, 407
BmiI GGNNCC 2 cut(s) 198, 491
BmrFI CCNGG 2 cut(s) 115, 498
BmsI GCATC 3 cut(s) 154, 232, 491
Bpu1102I GCTNAGC 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 155
BsaAI YACGTR 1 cut(s) 367
BsaHI GRCGYC 1 cut(s) 535
BsaI GGTCTC 1 cut(s) 431
BsaJI CCNNGG 3 cut(s) 400, 453, 634
BsaWI WCCGGW 6 cut(s) 544, 556, 584, 598, 619, 653
BsaXI ACNNNNNCTCC 2 cut(s) 462, 492
Bsc4I CCNNNNNNNGG 9 cut(s) 415, 544, 563, 570, 584, 605, 619, 626, 660
Bse118I RCCGGY 2 cut(s) 374, 584
BseBI CCWGG 2 cut(s) 115, 498
BseDI CCNNGG 3 cut(s) 400, 453, 634
BseGI GGATG 2 cut(s) 169, 506
BseLI CCNNNNNNNGG 9 cut(s) 415, 544, 563, 570, 584, 605, 619, 626, 660
BseMII CTCAG 2 cut(s) 299, 402
BseRI GAGGAG 1 cut(s) 60
BseXI GCAGC 1 cut(s) 301
BsgI GTGCAG 1 cut(s) 288
Bsh1236I CGCG 1 cut(s) 636
Bsh1285I CGRYCG 1 cut(s) 610
BshFI GGCC 4 cut(s) 320, 374, 408, 639
BshNI GGYRCC 2 cut(s) 196, 489
BshTI ACCGGT 1 cut(s) 584
BsiEI CGRYCG 1 cut(s) 610
BslI CCNNNNNNNGG 9 cut(s) 415, 544, 563, 570, 584, 605, 619, 626, 660
BsmAI GTCTC 1 cut(s) 431
BsnI GGCC 4 cut(s) 320, 374, 408, 639
Bso31I GGTCTC 1 cut(s) 431
Bsp143I GATC 2 cut(s) 449, 603
Bsp1720I GCTNAGC 1 cut(s) 285
Bsp19I CCATGG 2 cut(s) 400, 453
BspACI CCGC 3 cut(s) 405, 634, 636
BspANI GGCC 4 cut(s) 320, 374, 408, 639
BspCNI CTCAG 2 cut(s) 298, 403
BspFNI CGCG 1 cut(s) 636
BspLI GGNNCC 2 cut(s) 198, 491
BspMI ACCTGC 1 cut(s) 208
BspPI GGATC 1 cut(s) 444
BspQI GCTCTTC 1 cut(s) 162
BspT107I GGYRCC 2 cut(s) 196, 489
BspTNI GGTCTC 1 cut(s) 431
BsrFI RCCGGY 2 cut(s) 374, 584
BssAI RCCGGY 2 cut(s) 374, 584
BssECI CCNNGG 3 cut(s) 400, 453, 634
BssMI GATC 2 cut(s) 449, 603
BssNI GRCGYC 1 cut(s) 535
BssT1I CCWWGG 2 cut(s) 400, 453
Bst2UI CCWGG 2 cut(s) 115, 498
Bst4CI ACNGT 3 cut(s) 109, 132, 280
Bst6I CTCTTC 1 cut(s) 162
BstACI GRCGYC 1 cut(s) 535
BstBAI YACGTR 1 cut(s) 367
BstC8I GCNNGC 1 cut(s) 376
BstDEI CTNAG 2 cut(s) 285, 411
BstDSI CCRYGG 3 cut(s) 400, 453, 634
BstEII GGTNACC 1 cut(s) 547
BstF5I GGATG 2 cut(s) 169, 506
BstFNI CGCG 1 cut(s) 636
BstHHI GCGC 1 cut(s) 380
BstKTI GATC 2 cut(s) 452, 606
BstMAI GTCTC 1 cut(s) 431
BstMBI GATC 2 cut(s) 449, 603
BstMCI CGRYCG 1 cut(s) 610
BstMWI GCNNNNNNNGC 2 cut(s) 281, 351
BstNI CCWGG 2 cut(s) 115, 498
BstNSI RCATGY 1 cut(s) 275
BstPI GGTNACC 1 cut(s) 547
BstSCI CCNGG 2 cut(s) 113, 496
BstUI CGCG 1 cut(s) 636
BstV1I GCAGC 1 cut(s) 301
BstX2I RGATCY 1 cut(s) 449
BstYI RGATCY 1 cut(s) 449
BsuI GTATCC 1 cut(s) 121
BsuRI GGCC 4 cut(s) 320, 374, 408, 639
BtgI CCRYGG 3 cut(s) 400, 453, 634
BtsCI GGATG 2 cut(s) 169, 506
BtsIMutI CAGTG 1 cut(s) 198
BveI ACCTGC 1 cut(s) 208
Cac8I GCNNGC 1 cut(s) 376
CfoI GCGC 1 cut(s) 380
Cfr10I RCCGGY 2 cut(s) 374, 584
Cfr13I GGNCC 2 cut(s) 319, 407
Cfr42I CCGCGG 1 cut(s) 637
CseI GACGC 1 cut(s) 543
Csp6I GTAC 2 cut(s) 197, 437
CspAI ACCGGT 1 cut(s) 584
CspCI CAANNNNNGTGG 2 cut(s) 348, 383
CviAII CATG 8 cut(s) 181, 216, 226, 272, 323, 401, 445, 454
CviQI GTAC 2 cut(s) 197, 437
DdeI CTNAG 2 cut(s) 285, 411
DpnI GATC 2 cut(s) 451, 605
DpnII GATC 2 cut(s) 449, 603
DriI GACNNNNNGTC 1 cut(s) 588
EaeI YGGCCR 1 cut(s) 637
Eam1104I CTCTTC 1 cut(s) 162
Eam1105I GACNNNNNGTC 1 cut(s) 588
EarI CTCTTC 1 cut(s) 162
Eco130I CCWWGG 2 cut(s) 400, 453
Eco31I GGTCTC 1 cut(s) 431
Eco57I CTGAAG 2 cut(s) 143, 174
Eco72I CACGTG 1 cut(s) 367
Eco91I GGTNACC 1 cut(s) 547
EcoO65I GGTNACC 1 cut(s) 547
EcoRI GAATTC 1 cut(s) 385
EcoRII CCWGG 2 cut(s) 113, 496
EcoT14I CCWWGG 2 cut(s) 400, 453
ErhI CCWWGG 2 cut(s) 400, 453
FaeI CATG 8 cut(s) 184, 219, 229, 275, 326, 404, 448, 457
FaiI YATR 9 cut(s) 26, 182, 217, 227, 273, 324, 402, 446, 455
FalI AAGNNNNNCTT 2 cut(s) 459, 491
FatI CATG 8 cut(s) 180, 215, 225, 271, 322, 400, 444, 453
Fnu4HI GCNGC 3 cut(s) 290, 406, 637
FokI GGATG 2 cut(s) 176, 513
Fsp4HI GCNGC 3 cut(s) 290, 406, 637
FspBI CTAG 2 cut(s) 177, 647
GlaI GCGC 1 cut(s) 379
GluI GCNGC 3 cut(s) 290, 406, 637
HaeIII GGCC 4 cut(s) 320, 374, 408, 639
HgaI GACGC 1 cut(s) 543
HhaI GCGC 1 cut(s) 380
Hin1I GRCGYC 1 cut(s) 535
Hin1II CATG 8 cut(s) 184, 219, 229, 275, 326, 404, 448, 457
Hin6I GCGC 1 cut(s) 378
HinP1I GCGC 1 cut(s) 378
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 186
HinfI GANTC 8 cut(s) 396, 541, 567, 574, 595, 616, 630, 657
HpaI GTTAAC 1 cut(s) 88
HphI GGTGA 3 cut(s) 541, 613, 643
Hpy166II GTNNAC 2 cut(s) 88, 149
Hpy188I TCNGA 5 cut(s) 31, 42, 533, 594, 629
Hpy188III TCNNGA 4 cut(s) 161, 253, 430, 571
Hpy8I GTNNAC 2 cut(s) 88, 149
HpyAV CCTTC 1 cut(s) 27
HpyCH4III ACNGT 3 cut(s) 109, 132, 280
HpyCH4IV ACGT 1 cut(s) 366
HpyCH4V TGCA 4 cut(s) 275, 305, 359, 504
HpyF10VI GCNNNNNNNGC 2 cut(s) 281, 351
HpyF3I CTNAG 2 cut(s) 285, 411
HpySE526I ACGT 1 cut(s) 366
Hsp92I GRCGYC 1 cut(s) 535
Hsp92II CATG 8 cut(s) 184, 219, 229, 275, 326, 404, 448, 457
HspAI GCGC 1 cut(s) 378
KpnI GGTACC 1 cut(s) 200
KroI GCCGGC 1 cut(s) 374
KroNI GCCGGC 1 cut(s) 376
KspAI GTTAAC 1 cut(s) 88
KspI CCGCGG 1 cut(s) 637
Kzo9I GATC 2 cut(s) 449, 603
LguI GCTCTTC 1 cut(s) 162
Lsp1109I GCAGC 1 cut(s) 301
LweI GCATC 3 cut(s) 154, 232, 491
MaeI CTAG 2 cut(s) 177, 647
MaeII ACGT 1 cut(s) 366
MaeIII GTNAC 4 cut(s) 103, 547, 580, 649
MalI GATC 2 cut(s) 451, 605
MboI GATC 2 cut(s) 449, 603
MboII GAAGA 2 cut(s) 149, 470
MfeI CAATTG 1 cut(s) 71
MflI RGATCY 1 cut(s) 449
MluCI AATT 2 cut(s) 71, 385
MlyI GAGTC 2 cut(s) 639, 666
MnlI CCTC 4 cut(s) 38, 118, 364, 415
MroNI GCCGGC 1 cut(s) 374
MseI TTAA 4 cut(s) 66, 87, 297, 329
MspA1I CMGCKG 1 cut(s) 636
MspR9I CCNGG 2 cut(s) 115, 498
MunI CAATTG 1 cut(s) 71
MvaI CCWGG 2 cut(s) 115, 498
MvnI CGCG 1 cut(s) 636
MwoI GCNNNNNNNGC 2 cut(s) 281, 351
NaeI GCCGGC 1 cut(s) 376
NcoI CCATGG 2 cut(s) 400, 453
NdeII GATC 2 cut(s) 449, 603
NgoMIV GCCGGC 1 cut(s) 374
NlaIII CATG 8 cut(s) 184, 219, 229, 275, 326, 404, 448, 457
NlaIV GGNNCC 2 cut(s) 198, 491
NmuCI GTSAC 3 cut(s) 547, 580, 649
NspI RCATGY 1 cut(s) 275
PciSI GCTCTTC 1 cut(s) 162
PdiI GCCGGC 1 cut(s) 376
PfeI GAWTC 6 cut(s) 396, 541, 567, 574, 595, 616
PinAI ACCGGT 1 cut(s) 584
PkrI GCNGC 3 cut(s) 291, 407, 638
PleI GAGTC 2 cut(s) 638, 665
PmaCI CACGTG 1 cut(s) 367
PmlI CACGTG 1 cut(s) 367
PpsI GAGTC 2 cut(s) 638, 665
Ppu21I YACGTR 1 cut(s) 367
Psp6I CCWGG 2 cut(s) 113, 496
PspCI CACGTG 1 cut(s) 367
PspEI GGTNACC 1 cut(s) 547
PspGI CCWGG 2 cut(s) 113, 496
PspN4I GGNNCC 2 cut(s) 198, 491
PspPI GGNCC 2 cut(s) 319, 407
PsuI RGATCY 1 cut(s) 449
RsaI GTAC 2 cut(s) 198, 438
RsaNI GTAC 2 cut(s) 197, 437
SacII CCGCGG 1 cut(s) 637
SapI GCTCTTC 1 cut(s) 162
SaqAI TTAA 4 cut(s) 66, 87, 297, 329
SatI GCNGC 3 cut(s) 290, 406, 637
Sau3AI GATC 2 cut(s) 449, 603
Sau96I GGNCC 2 cut(s) 319, 407
SchI GAGTC 2 cut(s) 639, 666
ScrFI CCNGG 2 cut(s) 115, 498
SetI ASST 8 cut(s) 19, 157, 190, 202, 369, 477, 499, 670
SfaNI GCATC 3 cut(s) 154, 232, 491
Sfr303I CCGCGG 1 cut(s) 637
SgrBI CCGCGG 1 cut(s) 637
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
SpeI ACTAGT 1 cut(s) 646
Sse9I AATT 2 cut(s) 71, 385
SsiI CCGC 3 cut(s) 405, 634, 636
SspI AATATT 1 cut(s) 337
SspMI CTAG 2 cut(s) 177, 647
StyD4I CCNGG 2 cut(s) 113, 496
StyI CCWWGG 2 cut(s) 400, 453
TaaI ACNGT 3 cut(s) 109, 132, 280
TaiI ACGT 1 cut(s) 369
TaqI TCGA 1 cut(s) 123
TaqII GACCGA 1 cut(s) 596
TasI AATT 2 cut(s) 71, 385
TauI GCSGC 2 cut(s) 408, 639
TfiI GAWTC 6 cut(s) 396, 541, 567, 574, 595, 616
Tru1I TTAA 4 cut(s) 66, 87, 297, 329
Tru9I TTAA 4 cut(s) 66, 87, 297, 329
TscAI CASTG 1 cut(s) 198
TseFI GTSAC 3 cut(s) 547, 580, 649
TseI GCWGC 1 cut(s) 289
Tsp45I GTSAC 3 cut(s) 547, 580, 649
TspRI CASTG 1 cut(s) 198
XapI RAATTY 1 cut(s) 385
XceI RCATGY 1 cut(s) 275
XcmI CCANNNNNNNNNTGG 1 cut(s) 451
XspI CTAG 2 cut(s) 177, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.