Rw4G001980

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000324
Physical Location & Seq
Forward (+)
3610171 .. 3610599
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G001980.1

Sequence Viewer

Length: 429 bp
ATGCGGCAGGTGTGTGCTGACCGTCTTGAGGAAATGGAATTGGTTTTCATTGTTTCTAAGGATGGAATTGATACTGTGAGAGTGGTATGCCGATTCGAATGCCTGAGCAATAAGCTACCGAAAGGGAGGCATTTGATTGGGGATAGCGTGGTTTACGATGTGGGTGTTTGGTTGCCCGGGGAGTTTCAGCCGCAGCTAGAAGTTACCCCCATAACCAAGTATGATTGGGATCCTCAGCTGGTATTGGGCCGCCAAATTGCGGTGAATAAGTCATATGTATGCTATGGATTGAAGCAGGGGAATATTCGGGTTTTGAATATTCGGGTGCGAGTGTCGAAGGACGGCTTTTTGTCTGGAAAATTTCTGAAGGTCCAGACGAAGACGGTACGCCACAAATCACAGGAAAGATTGTTATGGCCATTCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

142

Amino Acids

16.41

Weight (kDa)

9.51

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 4, 191, 250, 260
AclWI GGATC 2 cut(s) 224, 237
AcoI YGGCCR 1 cut(s) 416
AcsI RAATTY 1 cut(s) 359
AcuI CTGAAG 1 cut(s) 386
AfaI GTAC 1 cut(s) 387
AfiI CCNNNNNNNGG 2 cut(s) 28, 259
AgsI TTSAA 3 cut(s) 292, 316, 424
AluBI AGCT 3 cut(s) 115, 196, 238
AluI AGCT 3 cut(s) 115, 196, 238
AlwI GGATC 2 cut(s) 224, 237
Ama87I CYCGRG 1 cut(s) 176
AoxI GGCC 2 cut(s) 247, 416
ApeKI GCWGC 1 cut(s) 193
ApoI RAATTY 1 cut(s) 359
AspS9I GGNCC 2 cut(s) 247, 370
AsuC2I CCSGG 2 cut(s) 177, 178
AsuHPI GGTGA 1 cut(s) 274
AsuII TTCGAA 1 cut(s) 96
AvaI CYCGRG 1 cut(s) 176
AvaII GGWCC 1 cut(s) 370
BalI TGGCCA 1 cut(s) 418
BamHI GGATCC 1 cut(s) 229
BbsI GAAGAC 1 cut(s) 386
BbvCI CCTCAGC 1 cut(s) 234
BbvI GCAGC 1 cut(s) 205
BccI CCATC 1 cut(s) 56
BceAI ACGGC 1 cut(s) 358
BcgI CGANNNNNNTGC 2 cut(s) 81, 115
BcnI CCSGG 2 cut(s) 177, 178
BfaI CTAG 1 cut(s) 197
BisI GCNGC 4 cut(s) 5, 191, 194, 250
BlsI GCNGC 4 cut(s) 6, 192, 195, 251
Bme1390I CCNGG 2 cut(s) 177, 178
Bme18I GGWCC 1 cut(s) 370
BmeT110I CYCGRG 1 cut(s) 176
BmgT120I GGNCC 2 cut(s) 247, 370
BmiI GGNNCC 1 cut(s) 231
BmrFI CCNGG 2 cut(s) 177, 178
BpiI GAAGAC 1 cut(s) 386
Bpu10I CCTNAGC 2 cut(s) 104, 234
Bpu14I TTCGAA 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 47
BpuMI CCSGG 2 cut(s) 177, 178
BsaBI GATNNNNATC 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 176, 177
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 259
Bse8I GATNNNNATC 1 cut(s) 228
BseDI CCNNGG 2 cut(s) 176, 177
BseGI GGATG 1 cut(s) 67
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 2 cut(s) 28, 259
BseMII CTCAG 2 cut(s) 95, 248
BseXI GCAGC 1 cut(s) 205
BshFI GGCC 2 cut(s) 249, 418
BsiHKCI CYCGRG 1 cut(s) 176
BsiSI CCGG 1 cut(s) 177
BslI CCNNNNNNNGG 2 cut(s) 28, 259
BsmI GAATGC 1 cut(s) 104
BsnI GGCC 2 cut(s) 249, 418
BsoBI CYCGRG 1 cut(s) 176
Bsp119I TTCGAA 1 cut(s) 96
Bsp143I GATC 1 cut(s) 229
BspACI CCGC 4 cut(s) 4, 191, 250, 260
BspANI GGCC 2 cut(s) 249, 418
BspCNI CTCAG 2 cut(s) 96, 247
BspLI GGNNCC 1 cut(s) 231
BspPI GGATC 2 cut(s) 224, 237
BspT104I TTCGAA 1 cut(s) 96
BssECI CCNNGG 2 cut(s) 176, 177
BssMI GATC 1 cut(s) 229
Bst4CI ACNGT 3 cut(s) 23, 76, 385
BstBI TTCGAA 1 cut(s) 96
BstDEI CTNAG 3 cut(s) 57, 104, 234
BstF5I GGATG 1 cut(s) 67
BstKTI GATC 1 cut(s) 232
BstMBI GATC 1 cut(s) 229
BstSCI CCNGG 2 cut(s) 175, 176
BstV1I GCAGC 1 cut(s) 205
BstV2I GAAGAC 1 cut(s) 386
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BsuRI GGCC 2 cut(s) 249, 418
BtsCI GGATG 1 cut(s) 67
Cfr13I GGNCC 2 cut(s) 247, 370
Cfr9I CCCGGG 1 cut(s) 176
Csp6I GTAC 1 cut(s) 386
CviJI RGCY 7 cut(s) 115, 190, 196, 238, 249, 345, 418
CviKI_1 RGCY 7 cut(s) 115, 190, 196, 238, 249, 345, 418
CviQI GTAC 1 cut(s) 386
DdeI CTNAG 3 cut(s) 57, 104, 234
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
EaeI YGGCCR 1 cut(s) 416
Eco47I GGWCC 1 cut(s) 370
Eco57I CTGAAG 1 cut(s) 386
Eco88I CYCGRG 1 cut(s) 176
FaiI YATR 8 cut(s) 88, 212, 222, 274, 276, 280, 285, 415
FalI AAGNNNNNCTT 2 cut(s) 329, 361
FauNDI CATATG 1 cut(s) 274
Fnu4HI GCNGC 4 cut(s) 5, 191, 194, 250
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 4 cut(s) 5, 191, 194, 250
FspBI CTAG 1 cut(s) 197
GluI GCNGC 4 cut(s) 5, 191, 194, 250
HaeIII GGCC 2 cut(s) 249, 418
HapII CCGG 1 cut(s) 177
HinfI GANTC 1 cut(s) 93
HpaII CCGG 1 cut(s) 177
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 1 cut(s) 366
Hpy188III TCNNGA 3 cut(s) 26, 354, 373
Hpy8I GTNNAC 1 cut(s) 154
HpyAV CCTTC 2 cut(s) 331, 361
HpyCH4III ACNGT 3 cut(s) 23, 76, 385
HpyF3I CTNAG 3 cut(s) 57, 104, 234
Kzo9I GATC 1 cut(s) 229
LpnPI CCDG 7 cut(s) 116, 190, 224, 281, 339, 386, 386
Lsp1109I GCAGC 1 cut(s) 205
MaeI CTAG 1 cut(s) 197
MaeIII GTNAC 1 cut(s) 202
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 1 cut(s) 391
MflI RGATCY 1 cut(s) 229
MlsI TGGCCA 1 cut(s) 418
MluCI AATT 4 cut(s) 38, 66, 255, 359
MluNI TGGCCA 1 cut(s) 418
MnlI CCTC 3 cut(s) 22, 120, 243
Mox20I TGGCCA 1 cut(s) 418
MscI TGGCCA 1 cut(s) 418
MslI CAYNNNNRTG 1 cut(s) 277
Msp20I TGGCCA 1 cut(s) 418
MspA1I CMGCKG 1 cut(s) 238
MspI CCGG 1 cut(s) 177
MspR9I CCNGG 2 cut(s) 177, 178
Mva1269I GAATGC 1 cut(s) 104
NciI CCSGG 2 cut(s) 177, 178
NdeI CATATG 1 cut(s) 274
NdeII GATC 1 cut(s) 229
NlaIV GGNNCC 1 cut(s) 231
NspV TTCGAA 1 cut(s) 96
PctI GAATGC 1 cut(s) 104
PfeI GAWTC 1 cut(s) 93
PkrI GCNGC 4 cut(s) 6, 192, 195, 251
PspN4I GGNNCC 1 cut(s) 231
PspPI GGNCC 2 cut(s) 247, 370
PsuI RGATCY 1 cut(s) 229
PvuII CAGCTG 1 cut(s) 238
RsaI GTAC 1 cut(s) 387
RsaNI GTAC 1 cut(s) 386
RseI CAYNNNNRTG 1 cut(s) 277
SatI GCNGC 4 cut(s) 5, 191, 194, 250
Sau3AI GATC 1 cut(s) 229
Sau96I GGNCC 2 cut(s) 247, 370
ScrFI CCNGG 2 cut(s) 177, 178
SetI ASST 5 cut(s) 12, 117, 198, 240, 372
SfuI TTCGAA 1 cut(s) 96
SinI GGWCC 1 cut(s) 370
SmaI CCCGGG 1 cut(s) 178
SmiMI CAYNNNNRTG 1 cut(s) 277
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
Sse9I AATT 4 cut(s) 38, 66, 255, 359
SsiI CCGC 4 cut(s) 4, 191, 250, 260
SspI AATATT 2 cut(s) 304, 319
SspMI CTAG 1 cut(s) 197
StyD4I CCNGG 2 cut(s) 175, 176
TaaI ACNGT 3 cut(s) 23, 76, 385
TaqI TCGA 2 cut(s) 96, 335
TasI AATT 4 cut(s) 38, 66, 255, 359
TauI GCSGC 3 cut(s) 7, 193, 252
TfiI GAWTC 1 cut(s) 93
TseI GCWGC 1 cut(s) 193
TspDTI ATGAA 1 cut(s) 37
TspMI CCCGGG 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 370
XapI RAATTY 1 cut(s) 359
XmaI CCCGGG 1 cut(s) 176
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.