Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000324

Physical Location & Seq

Genomic Coordinates Reverse (-)

2043071 .. 2047140

Gene Structure 4070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35991

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGAAGCTTCAGTTGTACCTGCCTTTGAGAAGCCATGTAAAGCCATGTTTGAGCAAGTAGATGCCACATTCCAGAAAGGAATAGTTGAACATGCAACTGTGGTTCAGCAACATTTTGAGTCTGCACATTCACCATTGGCCCATGCTTTAAGGACATACGCCCTGTTGTTGAAGATGTGCTGCAGAAAGAAGAGGATGAAGGTGCTCTACTTCTTGTTAGACCAAATGTATAAGAATGACATTTGTATCAATGCTGGAACCTACGCACTCTTGGTACGTGGGATGTGCAAGAATGATAAACTCGAAAACGCATGCTCCTTCTTTGAGGAGATGGTATTGAAGGGTTTTGTTCCCGAGGACAGCACATATAACTTGATAGTGGCGAGACTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

131

Amino Acids

14.99

Weight (kDa)

8.21

Isoelectric Point (pI)

31.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	52 - 97	1.9e-06	PPR repeat family
PPR_1	PF12854	80 - 112	8.6e-07	PPR repeat
PPR_2	PF13041	87 - 127	3.1e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca	FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica	MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica	Prupe.6G032100_v2.0.a1
pyrus_communis	pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis	RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata	RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora	Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii	Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa	Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha	Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana	Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	28
AfaI	GTAC	2 cut(s)	18, 276
AgsI	TTSAA	3 cut(s)	89, 172, 340
AluBI	AGCT	1 cut(s)	8
AluI	AGCT	1 cut(s)	8
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	1 cut(s)	379
Ama87I	CYCGRG	1 cut(s)	353
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	180
AspS9I	GGNCC	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	123
AvaI	CYCGRG	1 cut(s)	353
BaeI	ACNNNNGTAYC	2 cut(s)	229, 262
BarI	GAAGNNNNNNTAC	2 cut(s)	191, 223
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	167
BccI	CCATC	1 cut(s)	325
BcoDI	GTCTC	1 cut(s)	379
BfmI	CTRYAG	1 cut(s)	181
BfuAI	ACCTGC	1 cut(s)	28
BisI	GCNGC	1 cut(s)	181
BlsI	GCNGC	1 cut(s)	182
BmeT110I	CYCGRG	1 cut(s)	353
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	1 cut(s)	259
BmsI	GCATC	1 cut(s)	52
BsaAI	YACGTR	1 cut(s)	278
BsaJI	CCNNGG	1 cut(s)	354
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
BseDI	CCNNGG	1 cut(s)	354
BseGI	GGATG	2 cut(s)	201, 288
BseRI	GAGGAG	1 cut(s)	341
BseXI	GCAGC	1 cut(s)	167
BsgI	GTGCAG	1 cut(s)	108
BshFI	GGCC	1 cut(s)	140
BsiHKAI	GWGCWC	1 cut(s)	207
BsiHKCI	CYCGRG	1 cut(s)	353
BsmAI	GTCTC	1 cut(s)	379
BsnI	GGCC	1 cut(s)	140
BsoBI	CYCGRG	1 cut(s)	353
Bsp1286I	GDGCHC	1 cut(s)	207
BspANI	GGCC	1 cut(s)	140
BspLI	GGNNCC	1 cut(s)	259
BspMAI	CTGCAG	1 cut(s)	185
BspMI	ACCTGC	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	354
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	185
BstBAI	YACGTR	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	313
BstF5I	GGATG	2 cut(s)	201, 288
BstMAI	GTCTC	1 cut(s)	379
BstNSI	RCATGY	2 cut(s)	95, 315
BstSFI	CTRYAG	1 cut(s)	181
BstV1I	GCAGC	1 cut(s)	167
BsuRI	GGCC	1 cut(s)	140
BtsCI	GGATG	2 cut(s)	201, 288
BveI	ACCTGC	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	313
Cfr13I	GGNCC	1 cut(s)	139
Csp6I	GTAC	2 cut(s)	17, 275
CviAII	CATG	5 cut(s)	36, 46, 92, 143, 312
CviJI	RGCY	4 cut(s)	8, 34, 44, 140
CviKI_1	RGCY	4 cut(s)	8, 34, 44, 140
CviQI	GTAC	2 cut(s)	17, 275
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Eco88I	CYCGRG	1 cut(s)	353
FaeI	CATG	5 cut(s)	39, 49, 95, 146, 315
FaiI	YATR	9 cut(s)	37, 47, 93, 144, 157, 231, 313, 367, 369
FatI	CATG	5 cut(s)	35, 45, 91, 142, 311
Fnu4HI	GCNGC	1 cut(s)	181
FokI	GGATG	2 cut(s)	208, 295
Fsp4HI	GCNGC	1 cut(s)	181
GluI	GCNGC	1 cut(s)	181
HaeIII	GGCC	1 cut(s)	140
Hin1II	CATG	5 cut(s)	39, 49, 95, 146, 315
HindIII	AAGCTT	1 cut(s)	6
HinfI	GANTC	1 cut(s)	119
HphI	GGTGA	1 cut(s)	123
Hpy188I	TCNGA	1 cut(s)	395
Hpy188III	TCNNGA	2 cut(s)	73, 353
HpyAV	CCTTC	3 cut(s)	193, 328, 334
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4IV	ACGT	1 cut(s)	277
HpyCH4V	TGCA	4 cut(s)	95, 125, 183, 288
HpySE526I	ACGT	1 cut(s)	277
Hsp92II	CATG	5 cut(s)	39, 49, 95, 146, 315
LmnI	GCTCC	1 cut(s)	320
LpnPI	CCDG	4 cut(s)	33, 86, 176, 240
Lsp1109I	GCAGC	1 cut(s)	167
LweI	GCATC	1 cut(s)	52
MaeII	ACGT	1 cut(s)	277
MboII	GAAGA	2 cut(s)	184, 202
MhlI	GDGCHC	1 cut(s)	207
MlyI	GAGTC	1 cut(s)	128
MnlI	CCTC	3 cut(s)	186, 319, 349
MseI	TTAA	1 cut(s)	149
NlaIII	CATG	5 cut(s)	39, 49, 95, 146, 315
NlaIV	GGNNCC	1 cut(s)	259
NspI	RCATGY	2 cut(s)	95, 315
PaeI	GCATGC	1 cut(s)	315
PkrI	GCNGC	1 cut(s)	182
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
Ppu21I	YACGTR	1 cut(s)	278
PspN4I	GGNNCC	1 cut(s)	259
PspPI	GGNCC	1 cut(s)	139
PstI	CTGCAG	1 cut(s)	185
RsaI	GTAC	2 cut(s)	18, 276
RsaNI	GTAC	2 cut(s)	17, 275
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	1 cut(s)	181
Sau96I	GGNCC	1 cut(s)	139
SchI	GAGTC	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	5 cut(s)	10, 22, 204, 263, 280
SfaNI	GCATC	1 cut(s)	52
SfcI	CTRYAG	1 cut(s)	181
SphI	GCATGC	1 cut(s)	315
TaaI	ACNGT	1 cut(s)	100
TaiI	ACGT	1 cut(s)	280
TaqI	TCGA	1 cut(s)	303
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TseI	GCWGC	1 cut(s)	180
TspDTI	ATGAA	1 cut(s)	212
XceI	RCATGY	2 cut(s)	95, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.