Rh5AG494100

Enhancer of mRNA-decapping protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
84060598 .. 84064018
3421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG494100.1

Sequence Viewer

Length: 579 bp
ATGGAATCAAAACCTGTTGCATCGGCACCGGAGATTAGTGATGCTGATGCTGTTTTTGTAGCATCACAACCTCTTCCTTTGAGTCCTAGGTTGTCAGGGAAACTTTCTGGTTTAAGAAGCCCGACAGATAGCAGTGATCATGGTGGTGACCAACAAGTTAATGGGTACTCAGTTGACAGGCAGATGAATACTGCTCGTTCAAACTTGTCTGATATGCCTGCACTCGATGATGATGCAAGGAATGATGAACAGAAAATTGCACAAGACGAAGTTGATCTTCATGGGATACTGTTGCTGCAACCTGTTCCTCTGAGCCAAGGAGTACTTCTTTCGCTCCTGCAACAGCTGGCCTGTGATATCAACAATGATACACCCCGGAAAGTTGCATGGATGACAGACGTGGCAGCCGCCATAAACCCATCCAACCAGATGATTGCAATGCACGTGAGACCCATCTTTGAGCAAGTTTATCAGATACTGCACCATCAACATAGCTTGCCTACGATCTCCAGTGCCGAGCATGCTAGTCTTCGTCTTCTCATGCATGTCATTAACTCCATGATGATGGCCTGTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

192

Amino Acids

20.95

Weight (kDa)

5.17

Isoelectric Point (pI)

56.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDC4_C PF21289 90 - 165 4.8e-10 Enhancer of mRNA-decapping protein 4, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 25
AciI CCGC 1 cut(s) 408
AcvI CACGTG 1 cut(s) 445
AfaI GTAC 2 cut(s) 167, 324
AgsI TTSAA 1 cut(s) 201
AjiI CACGTC 1 cut(s) 400
AjuI GAANNNNNNNTTGG 2 cut(s) 309, 341
AluBI AGCT 2 cut(s) 346, 495
AluI AGCT 2 cut(s) 346, 495
Alw26I GTCTC 1 cut(s) 442
AlwNI CAGNNNCTG 1 cut(s) 478
AoxI GGCC 2 cut(s) 348, 567
ApeKI GCWGC 2 cut(s) 295, 404
AspA2I CCTAGG 1 cut(s) 86
AsuC2I CCSGG 1 cut(s) 376
AsuHPI GGTGA 1 cut(s) 158
AvrII CCTAGG 1 cut(s) 86
BanI GGYRCC 1 cut(s) 25
BbrPI CACGTG 1 cut(s) 445
BbsI GAAGAC 2 cut(s) 521, 527
BbvI GCAGC 2 cut(s) 282, 416
BccI CCATC 4 cut(s) 427, 461, 492, 559
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BciVI GTATCC 1 cut(s) 279
BclI TGATCA 1 cut(s) 136
BcnI CCSGG 1 cut(s) 376
BcoDI GTCTC 1 cut(s) 442
BfaI CTAG 2 cut(s) 87, 525
BfuI GTATCC 1 cut(s) 279
BisI GCNGC 3 cut(s) 296, 405, 408
BlnI CCTAGG 1 cut(s) 86
BlsI GCNGC 3 cut(s) 297, 406, 409
BmcAI AGTACT 1 cut(s) 324
Bme1390I CCNGG 1 cut(s) 376
BmgBI CACGTC 1 cut(s) 400
BmiI GGNNCC 1 cut(s) 27
BmrFI CCNGG 1 cut(s) 376
BmsI GCATC 5 cut(s) 29, 31, 37, 71, 223
BpiI GAAGAC 2 cut(s) 521, 527
BpmI CTGGAG 1 cut(s) 493
BpuMI CCSGG 1 cut(s) 376
BsaAI YACGTR 1 cut(s) 445
BsaI GGTCTC 1 cut(s) 442
BsaJI CCNNGG 3 cut(s) 86, 316, 374
BsaWI WCCGGW 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 510
Bse3DI GCAATG 1 cut(s) 444
BseDI CCNNGG 3 cut(s) 86, 316, 374
BseGI GGATG 2 cut(s) 396, 419
BseMI GCAATG 1 cut(s) 444
BseMII CTCAG 2 cut(s) 183, 302
BseNI ACTGG 1 cut(s) 510
BseXI GCAGC 2 cut(s) 282, 416
BsgI GTGCAG 2 cut(s) 204, 464
BshFI GGCC 2 cut(s) 350, 569
BshNI GGYRCC 1 cut(s) 25
BsiSI CCGG 2 cut(s) 29, 376
BsmAI GTCTC 1 cut(s) 442
BsnI GGCC 2 cut(s) 350, 569
Bso31I GGTCTC 1 cut(s) 442
Bsp143I GATC 3 cut(s) 136, 274, 504
BspACI CCGC 1 cut(s) 408
BspANI GGCC 2 cut(s) 350, 569
BspCNI CTCAG 2 cut(s) 182, 303
BspLI GGNNCC 1 cut(s) 27
BspT107I GGYRCC 1 cut(s) 25
BspTNI GGTCTC 1 cut(s) 442
BsrDI GCAATG 1 cut(s) 444
BsrI ACTGG 1 cut(s) 510
BssECI CCNNGG 3 cut(s) 86, 316, 374
BssMI GATC 3 cut(s) 136, 274, 504
BssT1I CCWWGG 2 cut(s) 86, 316
Bst4CI ACNGT 1 cut(s) 291
Bst6I CTCTTC 1 cut(s) 78
BstBAI YACGTR 1 cut(s) 445
BstC8I GCNNGC 4 cut(s) 219, 348, 497, 522
BstDEI CTNAG 2 cut(s) 169, 311
BstEII GGTNACC 1 cut(s) 146
BstF5I GGATG 2 cut(s) 396, 419
BstKTI GATC 3 cut(s) 139, 277, 507
BstMAI GTCTC 1 cut(s) 442
BstMBI GATC 3 cut(s) 136, 274, 504
BstMWI GCNNNNNNNGC 1 cut(s) 521
BstNSI RCATGY 2 cut(s) 524, 548
BstPI GGTNACC 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 374
BstV1I GCAGC 2 cut(s) 282, 416
BstV2I GAAGAC 2 cut(s) 521, 527
BstXI CCANNNNNNTGG 1 cut(s) 565
BsuI GTATCC 1 cut(s) 279
BsuRI GGCC 2 cut(s) 350, 569
BtrI CACGTC 1 cut(s) 400
BtsCI GGATG 2 cut(s) 396, 419
BtsI GCAGTG 1 cut(s) 139
BtsIMutI CAGTG 2 cut(s) 139, 517
Cac8I GCNNGC 4 cut(s) 219, 348, 497, 522
CaiI CAGNNNCTG 1 cut(s) 478
Csp6I GTAC 2 cut(s) 166, 323
CviAII CATG 7 cut(s) 140, 281, 387, 521, 541, 545, 559
CviJI RGCY 7 cut(s) 120, 315, 346, 350, 407, 495, 569
CviKI_1 RGCY 7 cut(s) 120, 315, 346, 350, 407, 495, 569
CviQI GTAC 2 cut(s) 166, 323
DdeI CTNAG 2 cut(s) 169, 311
DpnI GATC 3 cut(s) 138, 276, 506
DpnII GATC 3 cut(s) 136, 274, 504
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco130I CCWWGG 2 cut(s) 86, 316
Eco31I GGTCTC 1 cut(s) 442
Eco32I GATATC 1 cut(s) 358
Eco72I CACGTG 1 cut(s) 445
Eco91I GGTNACC 1 cut(s) 146
EcoO65I GGTNACC 1 cut(s) 146
EcoRV GATATC 1 cut(s) 358
EcoT14I CCWWGG 2 cut(s) 86, 316
EcoT22I ATGCAT 1 cut(s) 546
ErhI CCWWGG 2 cut(s) 86, 316
FaeI CATG 7 cut(s) 143, 284, 390, 524, 544, 548, 562
FalI AAGNNNNNCTT 4 cut(s) 261, 293, 309, 341
FatI CATG 7 cut(s) 139, 280, 386, 520, 540, 544, 558
FbaI TGATCA 1 cut(s) 136
Fnu4HI GCNGC 3 cut(s) 296, 405, 408
FokI GGATG 2 cut(s) 403, 406
Fsp4HI GCNGC 3 cut(s) 296, 405, 408
FspBI CTAG 2 cut(s) 87, 525
GluI GCNGC 3 cut(s) 296, 405, 408
GsuI CTGGAG 1 cut(s) 493
HaeIII GGCC 2 cut(s) 350, 569
HapII CCGG 2 cut(s) 29, 376
Hin1II CATG 7 cut(s) 143, 284, 390, 524, 544, 548, 562
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 2 cut(s) 5, 82
HpaII CCGG 2 cut(s) 29, 376
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 3 cut(s) 211, 312, 474
Hpy8I GTNNAC 1 cut(s) 175
HpyCH4III ACNGT 1 cut(s) 291
HpyCH4IV ACGT 2 cut(s) 399, 444
HpyF10VI GCNNNNNNNGC 1 cut(s) 521
HpyF3I CTNAG 2 cut(s) 169, 311
HpySE526I ACGT 2 cut(s) 399, 444
Hsp92II CATG 7 cut(s) 143, 284, 390, 524, 544, 548, 562
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 3 cut(s) 136, 274, 504
LmnI GCTCC 1 cut(s) 339
Lsp1109I GCAGC 2 cut(s) 282, 416
LweI GCATC 5 cut(s) 29, 31, 37, 71, 223
MaeI CTAG 2 cut(s) 87, 525
MaeII ACGT 2 cut(s) 399, 444
MaeIII GTNAC 1 cut(s) 146
MalI GATC 3 cut(s) 138, 276, 506
MboI GATC 3 cut(s) 136, 274, 504
MboII GAAGA 4 cut(s) 65, 269, 521, 527
MluCI AATT 1 cut(s) 255
MlyI GAGTC 1 cut(s) 91
MmeI TCCRAC 1 cut(s) 447
MnlI CCTC 2 cut(s) 81, 318
Mph1103I ATGCAT 1 cut(s) 546
MseI TTAA 3 cut(s) 113, 159, 552
MslI CAYNNNNRTG 2 cut(s) 144, 563
MspA1I CMGCKG 1 cut(s) 346
MspI CCGG 2 cut(s) 29, 376
MspR9I CCNGG 1 cut(s) 376
MwoI GCNNNNNNNGC 1 cut(s) 521
NciI CCSGG 1 cut(s) 376
NdeII GATC 3 cut(s) 136, 274, 504
NlaIII CATG 7 cut(s) 143, 284, 390, 524, 544, 548, 562
NlaIV GGNNCC 1 cut(s) 27
NmeAIII GCCGAG 1 cut(s) 541
NmuCI GTSAC 1 cut(s) 146
NsiI ATGCAT 1 cut(s) 546
NspI RCATGY 2 cut(s) 524, 548
PaeI GCATGC 1 cut(s) 524
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 3 cut(s) 297, 406, 409
PleI GAGTC 1 cut(s) 90
PmaCI CACGTG 1 cut(s) 445
PmlI CACGTG 1 cut(s) 445
PpsI GAGTC 1 cut(s) 90
Ppu21I YACGTR 1 cut(s) 445
PspCI CACGTG 1 cut(s) 445
PspEI GGTNACC 1 cut(s) 146
PspN4I GGNNCC 1 cut(s) 27
PstNI CAGNNNCTG 1 cut(s) 478
PvuII CAGCTG 1 cut(s) 346
RsaI GTAC 2 cut(s) 167, 324
RsaNI GTAC 2 cut(s) 166, 323
RseI CAYNNNNRTG 2 cut(s) 144, 563
SaqAI TTAA 3 cut(s) 113, 159, 552
SatI GCNGC 3 cut(s) 296, 405, 408
Sau3AI GATC 3 cut(s) 136, 274, 504
ScaI AGTACT 1 cut(s) 324
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 376
SetI ASST 8 cut(s) 16, 73, 92, 304, 348, 402, 447, 497
SfaNI GCATC 5 cut(s) 29, 31, 37, 71, 223
SmiMI CAYNNNNRTG 2 cut(s) 144, 563
SphI GCATGC 1 cut(s) 524
Sse9I AATT 1 cut(s) 255
SsiI CCGC 1 cut(s) 408
SspMI CTAG 2 cut(s) 87, 525
StyD4I CCNGG 1 cut(s) 374
StyI CCWWGG 2 cut(s) 86, 316
TaaI ACNGT 1 cut(s) 291
TaiI ACGT 2 cut(s) 402, 447
TaqI TCGA 1 cut(s) 225
TasI AATT 1 cut(s) 255
TatI WGTACW 1 cut(s) 322
TauI GCSGC 1 cut(s) 410
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 3 cut(s) 113, 159, 552
Tru9I TTAA 3 cut(s) 113, 159, 552
TscAI CASTG 2 cut(s) 139, 517
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 2 cut(s) 295, 404
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 3 cut(s) 200, 261, 269
TspRI CASTG 2 cut(s) 139, 517
XceI RCATGY 2 cut(s) 524, 548
XcmI CCANNNNNNNNNTGG 1 cut(s) 158
XmaJI CCTAGG 1 cut(s) 86
XspI CTAG 2 cut(s) 87, 525
ZrmI AGTACT 1 cut(s) 324
Zsp2I ATGCAT 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.