Rmu_sc0008380.1_g000012

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008380.1
OG0000324
Physical Location & Seq
Forward (+)
73224 .. 74715
1492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008380.1_g000012.1.cds

Sequence Viewer

Length: 621 bp
atgatggttaccgtcccaattacaaatgaaggcaaacgattagaagcggctctcggtcggagtatggagaaggctgtaaaggccaataatattgctttgagggctctgtctcaagaagagaatgcaaggaatgagaaattattttatctaattgatgcctgtgctgcagagaggatgggagataaagcagttaatcaattggaaaaatcagctaacccaaaacctgaagctactgtacccaggcaaattgaggcgcagtttcaaacatcgggtaaacaagctcttcaggatgctctcaagtctagcatggaagcttcagtagtacctgcctttgagaagtcatgtaaagccatgtttgagcaagtagatgccagtgatgccacattccagaaagtaatgattgaacatgcaactgtggctcagcagcattttgagtctgcacattcaccgttggcctatgctttaagggaagctattagctctgcatcatcagtggctcaaaccctaagccgagaactggctgatggtcaacgtaagttggtagctcttgcagctgcacggggaaactcaagtgcagtaaatcctgactgttgttctgccctgtgtaatgcattatggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

206

Amino Acids

22.2

Weight (kDa)

6.33

Isoelectric Point (pI)

42.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 334
AciI CCGC 1 cut(s) 47
AcuI CTGAAG 3 cut(s) 246, 269, 300
AfaI GTAC 2 cut(s) 237, 324
AfiI CCNNNNNNNGG 1 cut(s) 517
AgsI TTSAA 2 cut(s) 263, 404
AjnI CCWGG 1 cut(s) 239
AluBI AGCT 8 cut(s) 212, 230, 281, 314, 473, 480, 545, 554
AluI AGCT 8 cut(s) 212, 230, 281, 314, 473, 480, 545, 554
Alw26I GTCTC 1 cut(s) 114
AoxI GGCC 2 cut(s) 81, 453
ApeKI GCWGC 4 cut(s) 164, 424, 551, 554
AspLEI GCGC 1 cut(s) 256
AsuHPI GGTGA 1 cut(s) 438
BanII GRGCYC 1 cut(s) 106
BarI GAAGNNNNNNTAC 2 cut(s) 219, 251
BbvI GCAGC 4 cut(s) 151, 436, 541, 563
BccI CCATC 2 cut(s) 169, 518
BciT130I CCWGG 1 cut(s) 241
BcoDI GTCTC 1 cut(s) 114
BfaI CTAG 1 cut(s) 303
BfmI CTRYAG 1 cut(s) 165
BfuAI ACCTGC 1 cut(s) 334
BisI GCNGC 5 cut(s) 48, 165, 425, 552, 555
BlpI GCTNAGC 1 cut(s) 420
BlsI GCNGC 5 cut(s) 49, 166, 426, 553, 556
Bme1390I CCNGG 1 cut(s) 241
BmrFI CCNGG 1 cut(s) 241
BmsI GCATC 5 cut(s) 145, 280, 358, 367, 494
Bpu10I CCTNAGC 1 cut(s) 506
Bpu1102I GCTNAGC 1 cut(s) 420
BpuEI CTTGAG 3 cut(s) 96, 281, 553
BsaJI CCNNGG 1 cut(s) 239
Bsc4I CCNNNNNNNGG 1 cut(s) 517
Bse1I ACTGG 2 cut(s) 372, 522
BseBI CCWGG 1 cut(s) 241
BseDI CCNNGG 1 cut(s) 239
BseGI GGATG 2 cut(s) 180, 295
BseLI CCNNNNNNNGG 1 cut(s) 517
BseMII CTCAG 1 cut(s) 434
BseNI ACTGG 2 cut(s) 372, 522
BseXI GCAGC 4 cut(s) 151, 436, 541, 563
BsgI GTGCAG 3 cut(s) 423, 540, 594
Bsh1285I CGRYCG 1 cut(s) 58
BshFI GGCC 2 cut(s) 83, 455
BsiEI CGRYCG 1 cut(s) 58
BslI CCNNNNNNNGG 1 cut(s) 517
BsmAI GTCTC 1 cut(s) 114
BsmI GAATGC 1 cut(s) 127
BsnI GGCC 2 cut(s) 83, 455
Bsp1286I GDGCHC 1 cut(s) 106
Bsp1720I GCTNAGC 1 cut(s) 420
BspACI CCGC 1 cut(s) 47
BspANI GGCC 2 cut(s) 83, 455
BspCNI CTCAG 1 cut(s) 433
BspMAI CTGCAG 1 cut(s) 169
BspMI ACCTGC 1 cut(s) 334
BspQI GCTCTTC 1 cut(s) 288
BsrI ACTGG 2 cut(s) 372, 522
BssECI CCNNGG 1 cut(s) 239
Bst2UI CCWGG 1 cut(s) 241
Bst4CI ACNGT 5 cut(s) 13, 235, 415, 450, 590
Bst6I CTCTTC 2 cut(s) 111, 288
BstDEI CTNAG 2 cut(s) 420, 506
BstEII GGTNACC 1 cut(s) 7
BstF5I GGATG 2 cut(s) 180, 295
BstHHI GCGC 1 cut(s) 256
BstMAI GTCTC 1 cut(s) 114
BstMCI CGRYCG 1 cut(s) 58
BstMWI GCNNNNNNNGC 6 cut(s) 80, 101, 164, 377, 416, 551
BstNI CCWGG 1 cut(s) 241
BstNSI RCATGY 1 cut(s) 410
BstPI GGTNACC 1 cut(s) 7
BstSCI CCNGG 1 cut(s) 239
BstSFI CTRYAG 1 cut(s) 165
BstV1I GCAGC 4 cut(s) 151, 436, 541, 563
BsuRI GGCC 2 cut(s) 83, 455
BtsCI GGATG 2 cut(s) 180, 295
BtsIMutI CAGTG 2 cut(s) 379, 498
BveI ACCTGC 1 cut(s) 334
CfoI GCGC 1 cut(s) 256
Csp6I GTAC 2 cut(s) 236, 323
CviAII CATG 4 cut(s) 307, 342, 352, 407
CviQI GTAC 2 cut(s) 236, 323
DdeI CTNAG 2 cut(s) 420, 506
Eam1104I CTCTTC 2 cut(s) 111, 288
EarI CTCTTC 2 cut(s) 111, 288
Eco24I GRGCYC 1 cut(s) 106
Eco57I CTGAAG 3 cut(s) 246, 269, 300
Eco91I GGTNACC 1 cut(s) 7
EcoO65I GGTNACC 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 239
EcoT22I ATGCAT 1 cut(s) 613
EcoT38I GRGCYC 1 cut(s) 106
FaeI CATG 4 cut(s) 310, 345, 355, 410
FaiI YATR 7 cut(s) 65, 308, 343, 353, 408, 459, 616
FatI CATG 4 cut(s) 306, 341, 351, 406
Fnu4HI GCNGC 5 cut(s) 48, 165, 425, 552, 555
FokI GGATG 2 cut(s) 187, 302
FriOI GRGCYC 1 cut(s) 106
Fsp4HI GCNGC 5 cut(s) 48, 165, 425, 552, 555
FspBI CTAG 1 cut(s) 303
GlaI GCGC 1 cut(s) 255
GluI GCNGC 5 cut(s) 48, 165, 425, 552, 555
HaeIII GGCC 2 cut(s) 83, 455
HhaI GCGC 1 cut(s) 256
Hin1II CATG 4 cut(s) 310, 345, 355, 410
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HincII GTYRAC 1 cut(s) 530
HindII GTYRAC 1 cut(s) 530
HindIII AAGCTT 1 cut(s) 312
HinfI GANTC 1 cut(s) 434
HphI GGTGA 1 cut(s) 438
Hpy166II GTNNAC 2 cut(s) 275, 530
Hpy188I TCNGA 1 cut(s) 60
Hpy188III TCNNGA 4 cut(s) 113, 287, 388, 584
Hpy8I GTNNAC 2 cut(s) 275, 530
HpyAV CCTTC 2 cut(s) 23, 64
HpyCH4III ACNGT 5 cut(s) 13, 235, 415, 450, 590
HpyCH4IV ACGT 1 cut(s) 532
HpyCH4V TGCA 9 cut(s) 125, 167, 410, 440, 485, 551, 557, 575, 611
HpyF10VI GCNNNNNNNGC 6 cut(s) 80, 101, 164, 377, 416, 551
HpyF3I CTNAG 2 cut(s) 420, 506
HpySE526I ACGT 1 cut(s) 532
Hsp92II CATG 4 cut(s) 310, 345, 355, 410
HspAI GCGC 1 cut(s) 254
LguI GCTCTTC 1 cut(s) 288
Lsp1109I GCAGC 4 cut(s) 151, 436, 541, 563
LweI GCATC 5 cut(s) 145, 280, 358, 367, 494
MaeI CTAG 1 cut(s) 303
MaeII ACGT 1 cut(s) 532
MaeIII GTNAC 1 cut(s) 7
MboII GAAGA 2 cut(s) 128, 275
MfeI CAATTG 1 cut(s) 197
MhlI GDGCHC 1 cut(s) 106
MluCI AATT 5 cut(s) 18, 137, 150, 197, 246
MlyI GAGTC 1 cut(s) 443
MmeI TCCRAC 1 cut(s) 38
MnlI CCTC 3 cut(s) 93, 165, 244
Mph1103I ATGCAT 1 cut(s) 613
MseI TTAA 2 cut(s) 192, 464
MspA1I CMGCKG 1 cut(s) 554
MspR9I CCNGG 1 cut(s) 241
MunI CAATTG 1 cut(s) 197
Mva1269I GAATGC 1 cut(s) 127
MvaI CCWGG 1 cut(s) 241
MwoI GCNNNNNNNGC 6 cut(s) 80, 101, 164, 377, 416, 551
NlaIII CATG 4 cut(s) 310, 345, 355, 410
NmeAIII GCCGAG 1 cut(s) 536
NsiI ATGCAT 1 cut(s) 613
NspI RCATGY 1 cut(s) 410
PciSI GCTCTTC 1 cut(s) 288
PctI GAATGC 1 cut(s) 127
PkrI GCNGC 5 cut(s) 49, 166, 426, 553, 556
PleI GAGTC 1 cut(s) 442
PpsI GAGTC 1 cut(s) 442
Psp6I CCWGG 1 cut(s) 239
PspEI GGTNACC 1 cut(s) 7
PspGI CCWGG 1 cut(s) 239
PstI CTGCAG 1 cut(s) 169
PvuII CAGCTG 1 cut(s) 554
RsaI GTAC 2 cut(s) 237, 324
RsaNI GTAC 2 cut(s) 236, 323
SapI GCTCTTC 1 cut(s) 288
SaqAI TTAA 2 cut(s) 192, 464
SatI GCNGC 5 cut(s) 48, 165, 425, 552, 555
SchI GAGTC 1 cut(s) 443
ScrFI CCNGG 1 cut(s) 241
SduI GDGCHC 1 cut(s) 106
SfaNI GCATC 5 cut(s) 145, 280, 358, 367, 494
SfcI CTRYAG 1 cut(s) 165
SmlI CTYRAG 3 cut(s) 111, 296, 568
SmoI CTYRAG 3 cut(s) 111, 296, 568
Sse9I AATT 5 cut(s) 18, 137, 150, 197, 246
SsiI CCGC 1 cut(s) 47
SspI AATATT 1 cut(s) 91
SspMI CTAG 1 cut(s) 303
StyD4I CCNGG 1 cut(s) 239
TaaI ACNGT 5 cut(s) 13, 235, 415, 450, 590
TaiI ACGT 1 cut(s) 535
TaqII GACCGA 1 cut(s) 44
TasI AATT 5 cut(s) 18, 137, 150, 197, 246
TauI GCSGC 1 cut(s) 50
Tru1I TTAA 2 cut(s) 192, 464
Tru9I TTAA 2 cut(s) 192, 464
TscAI CASTG 2 cut(s) 379, 498
TseI GCWGC 4 cut(s) 164, 424, 551, 554
TspDTI ATGAA 1 cut(s) 42
TspRI CASTG 2 cut(s) 379, 498
XceI RCATGY 1 cut(s) 410
XspI CTAG 1 cut(s) 303
Zsp2I ATGCAT 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.