Rh4CG015300

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000324
Physical Location & Seq
Reverse (-)
2768762 .. 2775372
6611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG015300.1

Sequence Viewer

Length: 325 bp
ATGCCAAGCAATGAGCTACCGAAAGGGAGGCATTTGATTGGGGATAGCGTGGATTACGATGTGGGTGTTTGGTTGCCCGGGGAGTTTCAGCCGCAGCTAGAAGTTACCGCCATAACTAAGTATGGTTTGGATCCTCAGCTGGTGTTGGGATGCCAAATTGCGGTGAATAAGTCATATATATGCTATGGATTGAAGCAGGGGAATATTTGGGTTTTGAATATACACACTGAATTGAGATCGTTGTTTCGAGCTCATACACAGGAAGCTATTAGCTCTGCATCATCAGTGACTCAAACCCTAAGCGGAGAACTAGCTGATGGTCAAC
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

108

Amino Acids

11.83

Weight (kDa)

5.15

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 92, 108, 161, 303
AclWI GGATC 2 cut(s) 125, 138
AfiI CCNNNNNNNGG 1 cut(s) 160
AgsI TTSAA 2 cut(s) 193, 217
AluBI AGCT 7 cut(s) 16, 97, 139, 251, 266, 273, 314
AluI AGCT 7 cut(s) 16, 97, 139, 251, 266, 273, 314
Alw21I GWGCWC 1 cut(s) 253
AlwI GGATC 2 cut(s) 125, 138
Ama87I CYCGRG 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 94
AsuC2I CCSGG 2 cut(s) 78, 79
AsuHPI GGTGA 1 cut(s) 175
AvaI CYCGRG 1 cut(s) 77
BamHI GGATCC 1 cut(s) 130
BanII GRGCYC 1 cut(s) 253
Bbv12I GWGCWC 1 cut(s) 253
BbvCI CCTCAGC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 106
BccI CCATC 1 cut(s) 311
BcnI CCSGG 2 cut(s) 78, 79
BfaI CTAG 2 cut(s) 98, 311
BisI GCNGC 2 cut(s) 92, 95
BlsI GCNGC 2 cut(s) 93, 96
Bme1390I CCNGG 2 cut(s) 78, 79
BmeT110I CYCGRG 1 cut(s) 77
BmiI GGNNCC 1 cut(s) 132
BmrFI CCNGG 2 cut(s) 78, 79
BmsI GCATC 2 cut(s) 140, 287
Bpu10I CCTNAGC 2 cut(s) 135, 299
BpuMI CCSGG 2 cut(s) 78, 79
BsaJI CCNNGG 2 cut(s) 77, 78
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse3DI GCAATG 1 cut(s) 16
BseDI CCNNGG 2 cut(s) 77, 78
BseGI GGATG 1 cut(s) 155
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMI GCAATG 1 cut(s) 16
BseMII CTCAG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 106
BsiHKAI GWGCWC 1 cut(s) 253
BsiHKCI CYCGRG 1 cut(s) 77
BsiSI CCGG 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 160
BsoBI CYCGRG 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 253
Bsp143I GATC 2 cut(s) 130, 236
BspACI CCGC 4 cut(s) 92, 108, 161, 303
BspCNI CTCAG 1 cut(s) 148
BspLI GGNNCC 1 cut(s) 132
BspPI GGATC 2 cut(s) 125, 138
BsrDI GCAATG 1 cut(s) 16
BssECI CCNNGG 2 cut(s) 77, 78
BssMI GATC 2 cut(s) 130, 236
BstDEI CTNAG 3 cut(s) 117, 135, 299
BstF5I GGATG 1 cut(s) 155
BstKTI GATC 2 cut(s) 133, 239
BstMBI GATC 2 cut(s) 130, 236
BstSCI CCNGG 2 cut(s) 76, 77
BstV1I GCAGC 1 cut(s) 106
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
BtsCI GGATG 1 cut(s) 155
BtsIMutI CAGTG 2 cut(s) 225, 291
Cfr9I CCCGGG 1 cut(s) 77
CviJI RGCY 8 cut(s) 16, 91, 97, 139, 251, 266, 273, 314
CviKI_1 RGCY 8 cut(s) 16, 91, 97, 139, 251, 266, 273, 314
DdeI CTNAG 3 cut(s) 117, 135, 299
DpnI GATC 2 cut(s) 132, 238
DpnII GATC 2 cut(s) 130, 236
Ecl136II GAGCTC 1 cut(s) 251
Eco24I GRGCYC 1 cut(s) 253
Eco53kI GAGCTC 1 cut(s) 251
Eco88I CYCGRG 1 cut(s) 77
EcoICRI GAGCTC 1 cut(s) 251
EcoT38I GRGCYC 1 cut(s) 253
FaiI YATR 9 cut(s) 113, 123, 175, 177, 179, 181, 186, 221, 255
Fnu4HI GCNGC 2 cut(s) 92, 95
FokI GGATG 1 cut(s) 162
FriOI GRGCYC 1 cut(s) 253
Fsp4HI GCNGC 2 cut(s) 92, 95
FspBI CTAG 2 cut(s) 98, 311
GluI GCNGC 2 cut(s) 92, 95
HapII CCGG 1 cut(s) 78
HincII GTYRAC 1 cut(s) 323
HindII GTYRAC 1 cut(s) 323
HinfI GANTC 1 cut(s) 289
HpaII CCGG 1 cut(s) 78
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 1 cut(s) 323
Hpy8I GTNNAC 1 cut(s) 323
HpyCH4V TGCA 1 cut(s) 278
HpyF3I CTNAG 3 cut(s) 117, 135, 299
Kzo9I GATC 2 cut(s) 130, 236
LpnPI CCDG 4 cut(s) 91, 125, 182, 245
Lsp1109I GCAGC 1 cut(s) 106
LweI GCATC 2 cut(s) 140, 287
MaeI CTAG 2 cut(s) 98, 311
MaeIII GTNAC 2 cut(s) 103, 286
MalI GATC 2 cut(s) 132, 238
MboI GATC 2 cut(s) 130, 236
MflI RGATCY 1 cut(s) 130
MhlI GDGCHC 1 cut(s) 253
MluCI AATT 2 cut(s) 156, 230
MlyI GAGTC 1 cut(s) 283
MnlI CCTC 2 cut(s) 21, 144
MslI CAYNNNNRTG 1 cut(s) 178
MspA1I CMGCKG 1 cut(s) 139
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 2 cut(s) 78, 79
NciI CCSGG 2 cut(s) 78, 79
NdeII GATC 2 cut(s) 130, 236
NlaIV GGNNCC 1 cut(s) 132
NmuCI GTSAC 1 cut(s) 286
PkrI GCNGC 2 cut(s) 93, 96
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
Psp124BI GAGCTC 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 132
PsuI RGATCY 1 cut(s) 130
PvuII CAGCTG 1 cut(s) 139
RseI CAYNNNNRTG 1 cut(s) 178
SacI GAGCTC 1 cut(s) 253
SatI GCNGC 2 cut(s) 92, 95
Sau3AI GATC 2 cut(s) 130, 236
SchI GAGTC 1 cut(s) 283
ScrFI CCNGG 2 cut(s) 78, 79
SduI GDGCHC 1 cut(s) 253
SetI ASST 7 cut(s) 18, 99, 141, 253, 268, 275, 316
SfaNI GCATC 2 cut(s) 140, 287
SmaI CCCGGG 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 178
Sse9I AATT 2 cut(s) 156, 230
SsiI CCGC 4 cut(s) 92, 108, 161, 303
SspI AATATT 1 cut(s) 205
SspMI CTAG 2 cut(s) 98, 311
SstI GAGCTC 1 cut(s) 253
StyD4I CCNGG 2 cut(s) 76, 77
TaqI TCGA 1 cut(s) 247
TasI AATT 2 cut(s) 156, 230
TauI GCSGC 1 cut(s) 94
TscAI CASTG 2 cut(s) 232, 291
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 1 cut(s) 94
Tsp45I GTSAC 1 cut(s) 286
TspMI CCCGGG 1 cut(s) 77
TspRI CASTG 2 cut(s) 232, 291
XmaI CCCGGG 1 cut(s) 77
XspI CTAG 2 cut(s) 98, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.