Rh5CG539300

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000324
Physical Location & Seq
Reverse (-)
75387600 .. 75395154
7555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG539300.1

Sequence Viewer

Length: 3705 bp
ATGGCGTCCCCCGGAAACCCCAATCCGCCGCCGCCGCAGCAGCAGCAGCCCTTCGACATGGCCAAGTTCTTTAAACCCACAAGCCCAACCCCTCTCTCCCCCCATTCCCAGCCTCAGACCCAGGCCCCCACCCAAAACCCTAACCCTAATCTGAACTCCTCAGGCTTCCCAATCCCTCCGGCCTCTTACCCTCCCCCCTCTGGGCCCTACTCCTACCCTCCCCAAACGGCGCCGTATCACCAGCAGCAATTCCAGTACCAGCACCACCCTCAGCCTCATCCTCACAACCACCCCCAAATTCCTTACCCTCAAGACCACCAGCTGCTTCAGCAGCGGTCGCTCTCGTTTCCCATCCCGCCCCTGGCTCCCGGTAATTACAACATTGCCGCCGCCGCCGCCGCCGCCTCCAACCCCGGAAACGCCACCGCCACCAACCCCAATTCCGGCGCCCGAATCATGGCCCTGCTCGGTGCTCCTTCCTCCAGTCTAGAAATGCCGCCGCAGCCTGAGTTGTCGGTCCCCGGCTCTGGCGGGGTTTCGATGGTGCCCACTCTTCCTATGGGGATTCCACCCTCCCCGGCTCGAATGCCGAGCAATAAGCTGCCGAAGGGCAGGCATTTGATTGGGGATAGCGTGGTTTACGATGTGGATGTTAGGTTGCCCGGGGAGTTTCAGCCGCAGCTGGAAGTTACCCCCATTACTAAGTATGGTTCGGATCCTCAGCTGGTGTTGGGCCGCCAAATTGCGGTGAATAAGTCGTATATATGCTATGGATTGAAGCAGGGGAATATTCGGGTTTTGAATATACACACTGCATTGAGATCTTTGTTTCGAGCTCATACACAGAGGGTCACAGACATGGCTTTCTTTGCCGAGGATGTTCACCTTTTGGCTAGTGTGAGTGTAGAAGGACGGCTTTTTGTGTGGAAAATTTCTGAAGGTCCAGATGAAGAAGGTACGCCACAAATCACAGGAAAGATTGTTGTTGCCATTCAAATAGTTGGTGAGGGGGAAGCTGTTCATCCACGAGTTTGTTGGCACTGTCATAAACAGGAGGTTTTGGTTGTTGGAATTGGGAAGCGTGTTCTACGAATTGATACTACTAAAGTTGCAAAGGGTGAAGTCCCTTCTGCTGAGGATCCTATTAAGTGTCCTGTTGAAAAGCTTGTTGATGGGGTCCAATTTGTTGGTAAACATGATGGAGAGGTGACAGATTTATCAATGTGCCAATGGATGACCACCCGGCTGGTTTCTGCTTCTATGGATGGAACTATAAAGATCTGGGAAGATCGCAAGTCACAACCACTTTTAGTACTGAGACCCTATGATGGCCTTCCTGTTTATTCGTCTACATTTGTGACAGCTCCCAACAGACCTGATCACATCATACTTATAACAGTGGGCCCACTTAATCGGGAAGTGAAGATCTGGTCCTCAGAGAGTGAAGAAGGCTGGCTGCTTCCCAGTGATGCTGAGTCATGGAAATGTACCCAGACCTTAGAGTTAAAGAGCTCTGCTCAACCTCGAGTCGAGGATGCATTCTTTAATCAAGTCATAGCATTGTCACAAGCTGGCCTTCTTTTACTTGCAAATGCTAAGAAGAATGCTATATATGCCGTGCACTTAGACTTTGGTGGTGAGCCAGCATCCACACGCATGGATTACATAGCAGAATTTACTGTTACAATGCCTATTTTGAGCTTCACTGGGACAAGTATATCACCTCATGGTGAACAAATCGTTCAGGTGTATTGTGTCCAAACACAAGCCATTCAACAGTATGCCTTGGACTTATCCAAGTGCTTACCTCCCCCATTGGAGAATTCAGGTTTGGAAAAGTCAGATTCCAGTTTTTCACATGATGCAACCGAGGCGGTGTCAACTAATTCAGCACCAAAACCAATGATACAAGCTACTAGTTCTGAGGGTGCATCCTTGAGGTATCCTGTGCGCACTGCTTCAGTTGATCCTTCCAATTCAAAAGATATTACCACTTCGTCTATGGAATCAAAACCTGTTGCATCGGCACCGGAGATTAGTGATGCTGATGCTGTTTTTGTAGCATCACAACCTCTTCCTTTGAGTCCTAAGTTGTCAGGGAAACTTTCTGGTTTAAGAAGCCCGACAGATAGCAGTGATCATGGTGGTGACCAACAAGTTAATGAGTACTCAGTTGACAGGCAGATGAATACTGCTCGTTCAAACTTGTCTGATATGCCTGCACTCGATGATGATGCAAGGAATGATGAACAGAAAATTGCACAAGACGAAGTATCTAGTGTGCTCAATCCTCCTATTATGTTCAAACATCCAACCCATTTAATAACTCCCTCTGAGATTTTAATGGCTGCTTCATCCTCTGAGAATACAAATCCAATTGACAGCAACACTGAGGGGGATGCAAAAATCCAAGATGTTCTTGTTAACAGTGATGTGGGTAATCCTGAGGTGGAAGTTAAGGTTGTGGGTGAAACCAGATCTACTCAAGTCGATGAATTTGGCTCTCAACGAGAACTCCAAAATGTTGTTTCAGAAAATAAGGAGAAGTTCTTTTGCTCCCAGGCATCAGATCTTGGAATTGAGATGGCCCGGGATTGCTGTGCAATATCATCAGAATCTTATATTACAGATGAAGCCCGGCAAGGTGACGGTGCCAGCATGTCAGAACCACTAGCCCAGCCTCATTCTGGAGAGGAAGACCAGGATCTCTCTACAAAAGATGTATCTGGGTCAGCTACTGCCACAACCACATCACAAACACCAAATGCAAAGTCGAGAAAACAGAAATGGAAAAATATGCAAGCATCAGGTCCATCCTCCCCATCACCAGGTCTGCTCAATGCAGTAGAGTCCTCCAGTGAAGCAGGTGGGAGTGCAAGTCCCCCCTCCGGAGAAGTTGCATTTCCTCAAATTATGGCCATGCAGGATATGATGAATCAGCTAATGACTATGCAAAAAGAATTGCAAAAGCAGATGACAATGATGGTTACCGTCCCAATTACAAAGGAAGGCAAACGATTAGAGGCGGCTCTCGGTCGGAGTATGGAGAAGGCTGTAAAAGCCAATAATGATGCTTTGTGGGCTCGGTTTCAAGAAGAGAACGCAAAGAATGAGAAATTATTGCGAGACCGCACTCAACAAGTAACTAGTTTAATCAATAACTTTGTGACCAAGGACTTTCCAGTGATGTTAGAGAAAACGGTAAAAAAAGAAATAGCTGCTGTTGGACCAGCTGTTGTTCGTGCAATCACTCCAGCTATGGAGAAAACAATACCTTTGGCTATATCTGATTGCTTTCAGAGGGGAGTGGGAGATAAAGCAGTTAATCAATTGGAAAAATCAGTTAACTCAAAACTTGAAGCTACTGTATCCAGGCAAATCCAGGCGCAGTTTCAAACATCGGGTAAACAAGCTCTTCAGGATGCTCTCAAGTCTAGCATGGAAGCGTCAGTGGTACCTGCCTTTGAGAAGTCATGTAAAGCCATGTTTGAGCAAGTAGATGCCACATTCCAGAAAGGAATGGTTGAACATGCAACTGTGGCTCAGCAGCATTTTGAGTCTGCACATTCGCCGTTGGCCCATGCTTTAAGGGTGTGTGCTTGTACTCTGTCCAGCTTCTTCGCTTTTAATAATCTGTTTGTTGACAAATTTTTTTCGTTTATGCTTTCAAGAATTATAATGTTTGGGGTCTTTGATTCTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

1234

Amino Acids

133.95

Weight (kDa)

5.53

Isoelectric Point (pI)

47.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ge1_WD40 PF16529 230 - 542 3.9e-19 WD40 region of Ge1, enhancer of mRNA-decapping protein
WD40_WDHD1_1st PF24817 248 - 366 1.5e-06 WDHD1 first WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1394, 3677
AarI CACCTGC 1 cut(s) 2855
Acc16I TGCGCA 1 cut(s) 1952
Acc36I ACCTGC 2 cut(s) 2855, 3466
Acc65I GGTACC 1 cut(s) 3454
AccB1I GGYRCC 6 cut(s) 229, 446, 544, 2026, 2651, 3454
AccI GTMKAC 1 cut(s) 1349
AccIII TCCGGA 1 cut(s) 2888
AclWI GGATC 6 cut(s) 710, 723, 1133, 1146, 1961, 2712
AcoI YGGCCR 2 cut(s) 60, 2916
AcsI RAATTY 6 cut(s) 297, 930, 1673, 1822, 2495, 3647
AcuI CTGAAG 4 cut(s) 311, 957, 1944, 3401
AcyI GRCGYC 3 cut(s) 5, 230, 447
AfaI GTAC 7 cut(s) 257, 958, 1314, 1489, 2168, 3456, 3604
AhlI ACTAGT 2 cut(s) 1916, 3146
AjnI CCWGG 7 cut(s) 120, 360, 2559, 2700, 2827, 3371, 3381
AjuI GAANNNNNNNTTGG 2 cut(s) 1814, 1846
Alw21I GWGCWC 5 cut(s) 475, 838, 1514, 1623, 2286
Alw26I GTCTC 2 cut(s) 1312, 3120
Alw44I GTGCAC 1 cut(s) 1619
AlwI GGATC 6 cut(s) 710, 723, 1133, 1146, 1961, 2712
AlwNI CAGNNNCTG 1 cut(s) 2738
Ama87I CYCGRG 3 cut(s) 662, 1524, 2589
Aor13HI TCCGGA 1 cut(s) 2888
ApaI GGGCCC 2 cut(s) 207, 1406
ApaLI GTGCAC 1 cut(s) 1619
ApoI RAATTY 6 cut(s) 297, 930, 1673, 1822, 2495, 3647
ArsI GACNNNNNNTTYG 2 cut(s) 2756, 2788
Asp700I GAANNNNTTC 1 cut(s) 1017
Asp718I GGTACC 1 cut(s) 3454
AspLEI GCGC 4 cut(s) 232, 449, 1953, 3388
AvaI CYCGRG 3 cut(s) 662, 1524, 2589
AvaII GGWCC 6 cut(s) 517, 941, 1177, 1431, 2810, 3227
AxyI CCTNAGG 2 cut(s) 160, 2445
BaeGI GKGCMC 4 cut(s) 207, 549, 1406, 1623
BalI TGGCCA 2 cut(s) 62, 2918
BamHI GGATCC 2 cut(s) 715, 1138
BanI GGYRCC 6 cut(s) 229, 446, 544, 2026, 2651, 3454
BanII GRGCYC 5 cut(s) 207, 838, 1406, 1514, 3085
BauI CACGAG 1 cut(s) 1026
BbsI GAAGAC 1 cut(s) 2703
Bbv12I GWGCWC 5 cut(s) 475, 838, 1514, 1623, 2286
BbvCI CCTCAGC 3 cut(s) 270, 720, 1134
BceAI ACGGC 5 cut(s) 217, 243, 929, 1601, 3556
BcgI CGANNNNNNTGC 2 cut(s) 2216, 2250
BciT130I CCWGG 7 cut(s) 122, 362, 2561, 2702, 2829, 3373, 3383
BciVI GTATCC 2 cut(s) 1953, 3379
BclI TGATCA 2 cut(s) 1378, 2137
BcoDI GTCTC 2 cut(s) 1312, 3120
BcuI ACTAGT 2 cut(s) 1916, 3146
BfaI CTAG 7 cut(s) 488, 894, 1917, 2277, 2672, 3147, 3435
BfoI RGCGCY 2 cut(s) 233, 450
BfuAI ACCTGC 2 cut(s) 2855, 3466
BfuI GTATCC 2 cut(s) 1953, 3379
BglII AGATCT 5 cut(s) 821, 1278, 1425, 2477, 2569
BlpI GCTNAGC 1 cut(s) 3543
BmcAI AGTACT 2 cut(s) 1314, 2168
Bme18I GGWCC 6 cut(s) 517, 941, 1177, 1431, 2810, 3227
BmeT110I CYCGRG 3 cut(s) 662, 1524, 2589
BmrI ACTGGG 2 cut(s) 1458, 1716
BmuI ACTGGG 2 cut(s) 1458, 1716
BpiI GAAGAC 1 cut(s) 2703
BplI GAGNNNNNCTC 2 cut(s) 1501, 1533
BpmI CTGGAG 4 cut(s) 466, 2709, 2839, 3237
Bpu10I CCTNAGC 3 cut(s) 270, 720, 1134
Bpu1102I GCTNAGC 1 cut(s) 3543
BpuEI CTTGAG 4 cut(s) 294, 1957, 2469, 3413
BsaHI GRCGYC 3 cut(s) 5, 230, 447
BsaI GGTCTC 2 cut(s) 1312, 3120
BsaWI WCCGGW 2 cut(s) 2029, 2888
BsaXI ACNNNNNCTCC 4 cut(s) 2499, 2529, 2863, 2893
Bse1I ACTGG 7 cut(s) 253, 483, 1464, 1711, 1848, 2856, 3182
Bse21I CCTNAGG 2 cut(s) 160, 2445
Bse3DI GCAATG 1 cut(s) 381
BseAI TCCGGA 1 cut(s) 2888
BseBI CCWGG 7 cut(s) 122, 362, 2561, 2702, 2829, 3373, 3383
BseMI GCAATG 1 cut(s) 381
BseNI ACTGG 7 cut(s) 253, 483, 1464, 1711, 1848, 2856, 3182
BseRI GAGGAG 1 cut(s) 148
BseSI GKGCMC 4 cut(s) 207, 549, 1406, 1623
BseYI CCCAGC 2 cut(s) 108, 2676
BsgI GTGCAG 2 cut(s) 2205, 3546
Bsh1285I CGRYCG 2 cut(s) 338, 3037
BshNI GGYRCC 6 cut(s) 229, 446, 544, 2026, 2651, 3454
BsiEI CGRYCG 2 cut(s) 338, 3037
BsiHKAI GWGCWC 5 cut(s) 475, 838, 1514, 1623, 2286
BsiHKCI CYCGRG 3 cut(s) 662, 1524, 2589
BslFI GGGAC 5 cut(s) 503, 1109, 1723, 2865, 2978
BsmAI GTCTC 2 cut(s) 1312, 3120
BsmFI GGGAC 5 cut(s) 503, 1109, 1723, 2865, 2978
BsmI GAATGC 3 cut(s) 591, 1538, 1609
Bso31I GGTCTC 2 cut(s) 1312, 3120
BsoBI CYCGRG 3 cut(s) 662, 1524, 2589
Bsp120I GGGCCC 2 cut(s) 203, 1402
Bsp1286I GDGCHC 9 cut(s) 207, 475, 549, 838, 1406, 1514, 1623, 2286, 3085
Bsp13I TCCGGA 1 cut(s) 2888
Bsp1720I GCTNAGC 1 cut(s) 3543
BspEI TCCGGA 1 cut(s) 2888
BspMI ACCTGC 2 cut(s) 2855, 3466
BspPI GGATC 6 cut(s) 710, 723, 1133, 1146, 1961, 2712
BspQI GCTCTTC 1 cut(s) 3420
BspT107I GGYRCC 6 cut(s) 229, 446, 544, 2026, 2651, 3454
BspTNI GGTCTC 2 cut(s) 1312, 3120
BsrDI GCAATG 1 cut(s) 381
BsrI ACTGG 7 cut(s) 253, 483, 1464, 1711, 1848, 2856, 3182
BssNI GRCGYC 3 cut(s) 5, 230, 447
BssSI CACGAG 1 cut(s) 1026
BssT1I CCWWGG 2 cut(s) 1785, 3171
Bst2BI CACGAG 1 cut(s) 1026
Bst2UI CCWGG 7 cut(s) 122, 362, 2561, 2702, 2829, 3373, 3383
Bst6I CTCTTC 4 cut(s) 558, 2079, 3090, 3420
BstACI GRCGYC 3 cut(s) 5, 230, 447
BstC8I GCNNGC 7 cut(s) 614, 1454, 1573, 1644, 2220, 2656, 2802
BstEII GGTNACC 2 cut(s) 2147, 2986
BstH2I RGCGCY 2 cut(s) 233, 450
BstHHI GCGC 4 cut(s) 232, 449, 1953, 3388
BstMAI GTCTC 2 cut(s) 1312, 3120
BstMCI CGRYCG 2 cut(s) 338, 3037
BstNI CCWGG 7 cut(s) 122, 362, 2561, 2702, 2829, 3373, 3383
BstNSI RCATGY 2 cut(s) 2662, 3533
BstPI GGTNACC 2 cut(s) 2147, 2986
BstSLI GKGCMC 4 cut(s) 207, 549, 1406, 1623
BstV2I GAAGAC 1 cut(s) 2703
BstX2I RGATCY 8 cut(s) 715, 821, 1138, 1278, 1425, 2477, 2569, 2704
BstXI CCANNNNNNTGG 3 cut(s) 1187, 1246, 1657
BstYI RGATCY 8 cut(s) 715, 821, 1138, 1278, 1425, 2477, 2569, 2704
Bsu36I CCTNAGG 2 cut(s) 160, 2445
BsuI GTATCC 2 cut(s) 1953, 3379
BtsI GCAGTG 3 cut(s) 810, 1953, 2140
BveI ACCTGC 2 cut(s) 2855, 3466
Cac8I GCNNGC 7 cut(s) 614, 1454, 1573, 1644, 2220, 2656, 2802
CaiI CAGNNNCTG 1 cut(s) 2738
CfoI GCGC 4 cut(s) 232, 449, 1953, 3388
Cfr9I CCCGGG 2 cut(s) 662, 2589
CseI GACGC 1 cut(s) 3435
CsiI ACCWGGT 1 cut(s) 2827
Csp6I GTAC 7 cut(s) 256, 957, 1313, 1488, 2167, 3455, 3603
CviQI GTAC 7 cut(s) 256, 957, 1313, 1488, 2167, 3455, 3603
DinI GGCGCC 2 cut(s) 231, 448
DraI TTTAAA 1 cut(s) 73
EaeI YGGCCR 2 cut(s) 60, 2916
Eam1104I CTCTTC 4 cut(s) 558, 2079, 3090, 3420
EarI CTCTTC 4 cut(s) 558, 2079, 3090, 3420
EciI GGCGGA 1 cut(s) 15
Ecl136II GAGCTC 2 cut(s) 836, 1512
Eco130I CCWWGG 2 cut(s) 1785, 3171
Eco24I GRGCYC 5 cut(s) 207, 838, 1406, 1514, 3085
Eco31I GGTCTC 2 cut(s) 1312, 3120
Eco47I GGWCC 6 cut(s) 517, 941, 1177, 1431, 2810, 3227
Eco53kI GAGCTC 2 cut(s) 836, 1512
Eco57I CTGAAG 4 cut(s) 311, 957, 1944, 3401
Eco81I CCTNAGG 2 cut(s) 160, 2445
Eco88I CYCGRG 3 cut(s) 662, 1524, 2589
Eco91I GGTNACC 2 cut(s) 2147, 2986
EcoICRI GAGCTC 2 cut(s) 836, 1512
EcoO109I RGGNCCY 2 cut(s) 124, 204
EcoO65I GGTNACC 2 cut(s) 2147, 2986
EcoRI GAATTC 1 cut(s) 1822
EcoRII CCWGG 7 cut(s) 120, 360, 2559, 2700, 2827, 3371, 3381
EcoT14I CCWWGG 2 cut(s) 1785, 3171
EcoT22I ATGCAT 1 cut(s) 1540
EcoT38I GRGCYC 5 cut(s) 207, 838, 1406, 1514, 3085
EgeI GGCGCC 2 cut(s) 231, 448
EheI GGCGCC 2 cut(s) 231, 448
ErhI CCWWGG 2 cut(s) 1785, 3171
FalI AAGNNNNNCTT 6 cut(s) 900, 932, 1560, 1592, 2403, 2435
FaqI GGGAC 5 cut(s) 503, 1109, 1723, 2865, 2978
FauI CCCGC 2 cut(s) 363, 524
FbaI TGATCA 2 cut(s) 1378, 2137
FblI GTMKAC 1 cut(s) 1349
FriOI GRGCYC 5 cut(s) 207, 838, 1406, 1514, 3085
FspAI RTGCGCAY 1 cut(s) 1952
FspBI CTAG 7 cut(s) 488, 894, 1917, 2277, 2672, 3147, 3435
FspI TGCGCA 1 cut(s) 1952
GlaI GCGC 4 cut(s) 231, 448, 1952, 3387
GsaI CCCAGC 2 cut(s) 112, 2680
GsuI CTGGAG 4 cut(s) 466, 2709, 2839, 3237
HaeII RGCGCY 2 cut(s) 233, 450
HgaI GACGC 1 cut(s) 3435
HhaI GCGC 4 cut(s) 232, 449, 1953, 3388
Hin1I GRCGYC 3 cut(s) 5, 230, 447
Hin6I GCGC 4 cut(s) 230, 447, 1951, 3386
HinP1I GCGC 4 cut(s) 230, 447, 1951, 3386
HincII GTYRAC 5 cut(s) 1881, 2176, 2425, 3346, 3643
HindII GTYRAC 5 cut(s) 1881, 2176, 2425, 3346, 3643
HindIII AAGCTT 1 cut(s) 1163
HpaI GTTAAC 2 cut(s) 2425, 3346
Hsp92I GRCGYC 3 cut(s) 5, 230, 447
HspAI GCGC 4 cut(s) 230, 447, 1951, 3386
KasI GGCGCC 2 cut(s) 229, 446
Kpn2I TCCGGA 1 cut(s) 2888
KpnI GGTACC 1 cut(s) 3458
Ksp22I TGATCA 2 cut(s) 1378, 2137
KspAI GTTAAC 2 cut(s) 2425, 3346
LguI GCTCTTC 1 cut(s) 3420
LmnI GCTCC 4 cut(s) 370, 478, 1369, 2561
MabI ACCWGGT 1 cut(s) 2827
MaeI CTAG 7 cut(s) 488, 894, 1917, 2277, 2672, 3147, 3435
MfeI CAATTG 2 cut(s) 2376, 3329
MflI RGATCY 8 cut(s) 715, 821, 1138, 1278, 1425, 2477, 2569, 2704
MhlI GDGCHC 9 cut(s) 207, 475, 549, 838, 1406, 1514, 1623, 2286, 3085
MlsI TGGCCA 2 cut(s) 62, 2918
MluNI TGGCCA 2 cut(s) 62, 2918
Mly113I GGCGCC 2 cut(s) 230, 447
MlyI GAGTC 5 cut(s) 1484, 1536, 2092, 2858, 3566
MmeI TCCRAC 5 cut(s) 432, 1048, 2336, 3017, 3205
Mox20I TGGCCA 2 cut(s) 62, 2918
Mph1103I ATGCAT 1 cut(s) 1540
MroI TCCGGA 1 cut(s) 2888
MroXI GAANNNNTTC 1 cut(s) 1017
MscI TGGCCA 2 cut(s) 62, 2918
MslI CAYNNNNRTG 4 cut(s) 857, 1483, 1655, 2145
Msp20I TGGCCA 2 cut(s) 62, 2918
MspA1I CMGCKG 5 cut(s) 322, 334, 682, 724, 3233
MunI CAATTG 2 cut(s) 2376, 3329
Mva1269I GAATGC 3 cut(s) 591, 1538, 1609
MvaI CCWGG 7 cut(s) 122, 362, 2561, 2702, 2829, 3373, 3383
NarI GGCGCC 2 cut(s) 230, 447
NmeAIII GCCGAG 2 cut(s) 615, 898
NmuCI GTSAC 8 cut(s) 850, 1207, 1296, 1357, 1563, 2147, 2645, 3166
NsbI TGCGCA 1 cut(s) 1952
NsiI ATGCAT 1 cut(s) 1540
NspI RCATGY 2 cut(s) 2662, 3533
PaeR7I CTCGAG 1 cut(s) 1524
PaqCI CACCTGC 1 cut(s) 2855
PciSI GCTCTTC 1 cut(s) 3420
PctI GAATGC 3 cut(s) 591, 1538, 1609
PdmI GAANNNNTTC 1 cut(s) 1017
PfeI GAWTC 7 cut(s) 453, 565, 1844, 2006, 2615, 2935, 3695
PleI GAGTC 5 cut(s) 1483, 1535, 2091, 2857, 3565
PluTI GGCGCC 2 cut(s) 233, 450
PpsI GAGTC 5 cut(s) 1483, 1535, 2091, 2857, 3565
PsiI TTATAA 2 cut(s) 1394, 3677
Psp124BI GAGCTC 2 cut(s) 838, 1514
Psp6I CCWGG 7 cut(s) 120, 360, 2559, 2700, 2827, 3371, 3381
PspEI GGTNACC 2 cut(s) 2147, 2986
PspFI CCCAGC 2 cut(s) 108, 2676
PspGI CCWGG 7 cut(s) 120, 360, 2559, 2700, 2827, 3371, 3381
PspOMI GGGCCC 2 cut(s) 203, 1402
PspXI VCTCGAGB 1 cut(s) 1524
PstNI CAGNNNCTG 1 cut(s) 2738
PsuI RGATCY 8 cut(s) 715, 821, 1138, 1278, 1425, 2477, 2569, 2704
PvuII CAGCTG 4 cut(s) 322, 682, 724, 3233
RsaI GTAC 7 cut(s) 257, 958, 1314, 1489, 2168, 3456, 3604
RsaNI GTAC 7 cut(s) 256, 957, 1313, 1488, 2167, 3455, 3603
RseI CAYNNNNRTG 4 cut(s) 857, 1483, 1655, 2145
SacI GAGCTC 2 cut(s) 838, 1514
SapI GCTCTTC 1 cut(s) 3420
ScaI AGTACT 2 cut(s) 1314, 2168
SchI GAGTC 5 cut(s) 1484, 1536, 2092, 2858, 3566
SduI GDGCHC 9 cut(s) 207, 475, 549, 838, 1406, 1514, 1623, 2286, 3085
SexAI ACCWGGT 1 cut(s) 2827
SfoI GGCGCC 2 cut(s) 231, 448
Sfr274I CTCGAG 1 cut(s) 1524
SinI GGWCC 6 cut(s) 517, 941, 1177, 1431, 2810, 3227
SlaI CTCGAG 1 cut(s) 1524
SmaI CCCGGG 2 cut(s) 664, 2591
SmiMI CAYNNNNRTG 4 cut(s) 857, 1483, 1655, 2145
SmlI CTYRAG 5 cut(s) 309, 1524, 1936, 2484, 3428
SmoI CTYRAG 5 cut(s) 309, 1524, 1936, 2484, 3428
SpeI ACTAGT 2 cut(s) 1916, 3146
SspDI GGCGCC 2 cut(s) 229, 446
SspI AATATT 1 cut(s) 790
SspMI CTAG 7 cut(s) 488, 894, 1917, 2277, 2672, 3147, 3435
SstI GAGCTC 2 cut(s) 838, 1514
StyI CCWWGG 2 cut(s) 1785, 3171
TaqI TCGA 9 cut(s) 54, 539, 583, 832, 1525, 1530, 2226, 2490, 2774
TaqII GACCGA 2 cut(s) 505, 3023
TatI WGTACW 3 cut(s) 1312, 2166, 3602
TfiI GAWTC 7 cut(s) 453, 565, 1844, 2006, 2615, 2935, 3695
TseFI GTSAC 8 cut(s) 850, 1207, 1296, 1357, 1563, 2147, 2645, 3166
Tsp45I GTSAC 8 cut(s) 850, 1207, 1296, 1357, 1563, 2147, 2645, 3166
TspDTI ATGAA 8 cut(s) 963, 1010, 2201, 2262, 2343, 2508, 2646, 2948
TspMI CCCGGG 2 cut(s) 662, 2589
VneI GTGCAC 1 cut(s) 1619
VpaK11BI GGWCC 6 cut(s) 517, 941, 1177, 1431, 2810, 3227
XapI RAATTY 6 cut(s) 297, 930, 1673, 1822, 2495, 3647
XbaI TCTAGA 1 cut(s) 487
XceI RCATGY 2 cut(s) 2662, 3533
XcmI CCANNNNNNNNNTGG 5 cut(s) 358, 556, 1032, 1999, 2684
XhoI CTCGAG 1 cut(s) 1524
XmaI CCCGGG 2 cut(s) 662, 2589
XmiI GTMKAC 1 cut(s) 1349
XmnI GAANNNNTTC 1 cut(s) 1017
XspI CTAG 7 cut(s) 488, 894, 1917, 2277, 2672, 3147, 3435
ZrmI AGTACT 2 cut(s) 1314, 2168
Zsp2I ATGCAT 1 cut(s) 1540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.