Rroxscaffold_5G00334020

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000324
Physical Location & Seq
Reverse (-)
1352981 .. 1355463
2483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00334020.1

Sequence Viewer

Length: 426 bp
ATGGCTTTCTTTGCCGAGGATGTTCACCTTTTGGATAGTATGAGTGTAGAAGGACGGCTTTTTGTATGCAAAATTTCTGAAGGTCTAGATGAAGATGGTATGCCACAAATTACAGGAAAGATTGTTATGGCCATTCAAATAGTTGGTGAGGGGGAAGTTGTTCATCCACCAGTTTGGCGGCACTGTCATAAACAAGAGGTTTTGGTTGTTTGGGTTGGGAAACGTTTCTACAAATTGTTACTACTAAAGTTGCAATGGGTGAAGTCCCTTCTGCTGAGGATCCTATTTAAGTGTCCTGTTGAAAAACTTATTGATGGGGTCCAATTTGTTAGTAAACATGACGGAGAGGTGACAGATTTATCAATGTGCCAATGGATGACCACCCAGCTGGTTTCTGCTTCTATGGATGGAACTATAAAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

141

Amino Acids

16.01

Weight (kDa)

6.19

Isoelectric Point (pI)

33.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 178
AclI AACGTT 1 cut(s) 223
AclWI GGATC 2 cut(s) 274, 287
AcoI YGGCCR 1 cut(s) 129
AcsI RAATTY 1 cut(s) 72
AcuI CTGAAG 1 cut(s) 99
AgsI TTSAA 2 cut(s) 137, 302
AluBI AGCT 1 cut(s) 388
AluI AGCT 1 cut(s) 388
AlwI GGATC 2 cut(s) 274, 287
AoxI GGCC 1 cut(s) 129
ApoI RAATTY 1 cut(s) 72
Asp700I GAANNNNTTC 2 cut(s) 159, 224
AspS9I GGNCC 1 cut(s) 319
AsuHPI GGTGA 4 cut(s) 17, 158, 271, 361
AvaII GGWCC 1 cut(s) 319
BalI TGGCCA 1 cut(s) 131
BamHI GGATCC 1 cut(s) 279
BbvCI CCTCAGC 1 cut(s) 275
BccI CCATC 3 cut(s) 89, 308, 401
BceAI ACGGC 1 cut(s) 71
BfaI CTAG 2 cut(s) 86, 424
BglII AGATCT 1 cut(s) 420
BisI GCNGC 1 cut(s) 179
BlsI GCNGC 1 cut(s) 180
Bme18I GGWCC 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 319
BmiI GGNNCC 2 cut(s) 281, 320
Bpu10I CCTNAGC 1 cut(s) 275
BsaJI CCNNGG 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 170
Bse3DI GCAATG 1 cut(s) 260
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 4 cut(s) 25, 163, 381, 412
BseMI GCAATG 1 cut(s) 260
BseMII CTCAG 1 cut(s) 266
BseNI ACTGG 1 cut(s) 170
BseYI CCCAGC 1 cut(s) 384
BshFI GGCC 1 cut(s) 131
BslFI GGGAC 1 cut(s) 250
BsmFI GGGAC 1 cut(s) 250
BsnI GGCC 1 cut(s) 131
Bsp143I GATC 2 cut(s) 279, 420
BspACI CCGC 1 cut(s) 178
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 1 cut(s) 267
BspLI GGNNCC 2 cut(s) 281, 320
BspPI GGATC 2 cut(s) 274, 287
BsrDI GCAATG 1 cut(s) 260
BsrI ACTGG 1 cut(s) 170
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 2 cut(s) 279, 420
Bst4CI ACNGT 1 cut(s) 185
BstDEI CTNAG 1 cut(s) 275
BstF5I GGATG 4 cut(s) 25, 163, 381, 412
BstKTI GATC 2 cut(s) 282, 423
BstMBI GATC 2 cut(s) 279, 420
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstX2I RGATCY 2 cut(s) 279, 420
BstXI CCANNNNNNTGG 2 cut(s) 174, 388
BstYI RGATCY 2 cut(s) 279, 420
BsuRI GGCC 1 cut(s) 131
BtsCI GGATG 4 cut(s) 25, 163, 381, 412
BtsIMutI CAGTG 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 319
CviAII CATG 1 cut(s) 338
CviJI RGCY 4 cut(s) 5, 58, 131, 388
CviKI_1 RGCY 4 cut(s) 5, 58, 131, 388
DdeI CTNAG 1 cut(s) 275
DpnI GATC 2 cut(s) 281, 422
DpnII GATC 2 cut(s) 279, 420
EaeI YGGCCR 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 319
Eco57I CTGAAG 1 cut(s) 99
FaeI CATG 1 cut(s) 341
FaiI YATR 8 cut(s) 41, 67, 101, 128, 189, 339, 404, 416
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FaqI GGGAC 1 cut(s) 250
FatI CATG 1 cut(s) 337
Fnu4HI GCNGC 1 cut(s) 179
FokI GGATG 4 cut(s) 32, 150, 388, 419
Fsp4HI GCNGC 1 cut(s) 179
FspBI CTAG 2 cut(s) 86, 424
GluI GCNGC 1 cut(s) 179
GsaI CCCAGC 1 cut(s) 388
HaeIII GGCC 1 cut(s) 131
Hin1II CATG 1 cut(s) 341
HphI GGTGA 4 cut(s) 17, 158, 271, 361
Hpy166II GTNNAC 2 cut(s) 25, 335
Hpy188I TCNGA 1 cut(s) 79
Hpy188III TCNNGA 1 cut(s) 86
Hpy8I GTNNAC 2 cut(s) 25, 335
HpyAV CCTTC 3 cut(s) 44, 74, 278
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 2 cut(s) 69, 253
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 275
HpySE526I ACGT 1 cut(s) 223
Hsp92II CATG 1 cut(s) 341
Kzo9I GATC 2 cut(s) 279, 420
LpnPI CCDG 5 cut(s) 99, 183, 309, 374, 398
MaeI CTAG 2 cut(s) 86, 424
MaeII ACGT 1 cut(s) 223
MaeIII GTNAC 2 cut(s) 237, 349
MalI GATC 2 cut(s) 281, 422
MboI GATC 2 cut(s) 279, 420
MboII GAAGA 1 cut(s) 104
MflI RGATCY 2 cut(s) 279, 420
MlsI TGGCCA 1 cut(s) 131
MluCI AATT 4 cut(s) 72, 108, 233, 323
MluNI TGGCCA 1 cut(s) 131
MnlI CCTC 5 cut(s) 10, 142, 190, 270, 340
Mox20I TGGCCA 1 cut(s) 131
MroXI GAANNNNTTC 2 cut(s) 159, 224
MscI TGGCCA 1 cut(s) 131
MseI TTAA 1 cut(s) 288
Msp20I TGGCCA 1 cut(s) 131
MspA1I CMGCKG 1 cut(s) 388
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 2 cut(s) 279, 420
NlaIII CATG 1 cut(s) 341
NlaIV GGNNCC 2 cut(s) 281, 320
NmeAIII GCCGAG 1 cut(s) 40
NmuCI GTSAC 1 cut(s) 349
PdmI GAANNNNTTC 2 cut(s) 159, 224
PkrI GCNGC 1 cut(s) 180
Psp1406I AACGTT 1 cut(s) 223
PspFI CCCAGC 1 cut(s) 384
PspN4I GGNNCC 2 cut(s) 281, 320
PspPI GGNCC 1 cut(s) 319
PsuI RGATCY 2 cut(s) 279, 420
PvuII CAGCTG 1 cut(s) 388
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 1 cut(s) 179
Sau3AI GATC 2 cut(s) 279, 420
Sau96I GGNCC 1 cut(s) 319
SetI ASST 6 cut(s) 30, 85, 201, 226, 351, 390
SgeI CNNG 9 cut(s) 28, 98, 126, 182, 206, 308, 350, 397, 401
SinI GGWCC 1 cut(s) 319
Sse9I AATT 4 cut(s) 72, 108, 233, 323
SsiI CCGC 1 cut(s) 178
SspMI CTAG 2 cut(s) 86, 424
TaaI ACNGT 1 cut(s) 185
TaiI ACGT 1 cut(s) 226
TasI AATT 4 cut(s) 72, 108, 233, 323
TauI GCSGC 1 cut(s) 181
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TscAI CASTG 1 cut(s) 188
TseFI GTSAC 1 cut(s) 349
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 2 cut(s) 105, 152
TspGWI ACGGA 1 cut(s) 357
TspRI CASTG 1 cut(s) 188
VpaK11BI GGWCC 1 cut(s) 319
XapI RAATTY 1 cut(s) 72
XbaI TCTAGA 1 cut(s) 85
XmnI GAANNNNTTC 2 cut(s) 159, 224
XspI CTAG 2 cut(s) 86, 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.