pycom12g06730

Enhancer of mRNA-decapping protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Forward (+)
7013783 .. 7014468
686 bp
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UTR
Exon/CDS
Intron
pycom12g06730.1

Sequence Viewer

Length: 231 bp
ATGGCTAATGAAATAATGGTCTGCTTAAGGAAGGAAGCTATTAATTCTGCATCATCAGTGACTCAAACCTTAAGCAGAGAAGTGGCTGACGGTCTACGTAAGCTCATAGCTCTTGCAGCTGCACGAGGAAACTCAAGTGCAGTAAATCCTCAAGTCACACAACTCACTAATGGACCTTTGGGTGGTCTTCATGAGAAGTTCATGGATTCCGTGCTGCTGCGGTATATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

77

Amino Acids

8.14

Weight (kDa)

9.1

Isoelectric Point (pI)

23.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 94
AciI CCGC 1 cut(s) 220
AfiI CCNNNNNNNGG 1 cut(s) 182
AflII CTTAAG 2 cut(s) 25, 70
AluBI AGCT 4 cut(s) 38, 103, 110, 119
AluI AGCT 4 cut(s) 38, 103, 110, 119
ApeKI GCWGC 4 cut(s) 116, 119, 214, 217
AseI ATTAAT 1 cut(s) 42
AspS9I GGNCC 1 cut(s) 173
AvaII GGWCC 1 cut(s) 173
BauI CACGAG 1 cut(s) 123
BbsI GAAGAC 1 cut(s) 179
BbvI GCAGC 4 cut(s) 106, 128, 201, 204
BfrI CTTAAG 2 cut(s) 25, 70
BisI GCNGC 4 cut(s) 117, 120, 215, 218
BlsI GCNGC 4 cut(s) 118, 121, 216, 219
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 173
BmsI GCATC 1 cut(s) 59
BpiI GAAGAC 1 cut(s) 179
BpuEI CTTGAG 2 cut(s) 118, 135
BsaAI YACGTR 1 cut(s) 98
Bsc4I CCNNNNNNNGG 1 cut(s) 182
BseLI CCNNNNNNNGG 1 cut(s) 182
BseXI GCAGC 4 cut(s) 106, 128, 201, 204
BsgI GTGCAG 2 cut(s) 105, 159
BslI CCNNNNNNNGG 1 cut(s) 182
BspACI CCGC 1 cut(s) 220
BspHI TCATGA 1 cut(s) 190
BspTI CTTAAG 2 cut(s) 25, 70
BssSI CACGAG 1 cut(s) 123
Bst2BI CACGAG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 92
BstAFI CTTAAG 2 cut(s) 25, 70
BstBAI YACGTR 1 cut(s) 98
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstSNI TACGTA 1 cut(s) 98
BstV1I GCAGC 4 cut(s) 106, 128, 201, 204
BstV2I GAAGAC 1 cut(s) 179
BtsIMutI CAGTG 1 cut(s) 63
CciI TCATGA 1 cut(s) 190
Cfr13I GGNCC 1 cut(s) 173
CviAII CATG 2 cut(s) 191, 202
CviJI RGCY 6 cut(s) 5, 38, 86, 103, 110, 119
CviKI_1 RGCY 6 cut(s) 5, 38, 86, 103, 110, 119
Eco105I TACGTA 1 cut(s) 98
Eco47I GGWCC 1 cut(s) 173
FaeI CATG 2 cut(s) 194, 205
FaiI YATR 4 cut(s) 107, 192, 203, 225
FatI CATG 2 cut(s) 190, 201
FblI GTMKAC 1 cut(s) 94
Fnu4HI GCNGC 4 cut(s) 117, 120, 215, 218
Fsp4HI GCNGC 4 cut(s) 117, 120, 215, 218
GluI GCNGC 4 cut(s) 117, 120, 215, 218
Hin1II CATG 2 cut(s) 194, 205
HinfI GANTC 2 cut(s) 61, 206
Hpy166II GTNNAC 1 cut(s) 95
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 95
HpyAV CCTTC 1 cut(s) 25
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 4 cut(s) 50, 116, 122, 140
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpySE526I ACGT 1 cut(s) 97
Hsp92II CATG 2 cut(s) 194, 205
Lsp1109I GCAGC 4 cut(s) 106, 128, 201, 204
LweI GCATC 1 cut(s) 59
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 2 cut(s) 58, 154
MboII GAAGA 1 cut(s) 179
MluCI AATT 1 cut(s) 43
MlyI GAGTC 1 cut(s) 55
MnlI CCTC 2 cut(s) 119, 159
MseI TTAA 4 cut(s) 26, 42, 71, 229
MspA1I CMGCKG 1 cut(s) 119
MspCI CTTAAG 2 cut(s) 25, 70
MwoI GCNNNNNNNGC 1 cut(s) 116
NlaIII CATG 2 cut(s) 194, 205
NmuCI GTSAC 2 cut(s) 58, 154
PagI TCATGA 1 cut(s) 190
PfeI GAWTC 1 cut(s) 206
PkrI GCNGC 4 cut(s) 118, 121, 216, 219
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
Ppu21I YACGTR 1 cut(s) 98
PshBI ATTAAT 1 cut(s) 42
PspPI GGNCC 1 cut(s) 173
PvuII CAGCTG 1 cut(s) 119
SaqAI TTAA 4 cut(s) 26, 42, 71, 229
SatI GCNGC 4 cut(s) 117, 120, 215, 218
Sau96I GGNCC 1 cut(s) 173
SchI GAGTC 1 cut(s) 55
SetI ASST 7 cut(s) 40, 71, 100, 105, 112, 121, 178
SfaNI GCATC 1 cut(s) 59
SgeI CNNG 8 cut(s) 125, 135, 137, 147, 164, 203, 214, 223
SinI GGWCC 1 cut(s) 173
SmlI CTYRAG 4 cut(s) 25, 70, 133, 150
SmoI CTYRAG 4 cut(s) 25, 70, 133, 150
SnaBI TACGTA 1 cut(s) 98
Sse9I AATT 1 cut(s) 43
SsiI CCGC 1 cut(s) 220
TaaI ACNGT 1 cut(s) 92
TaiI ACGT 1 cut(s) 100
TasI AATT 1 cut(s) 43
TfiI GAWTC 1 cut(s) 206
Tru1I TTAA 4 cut(s) 26, 42, 71, 229
Tru9I TTAA 4 cut(s) 26, 42, 71, 229
TscAI CASTG 1 cut(s) 63
TseFI GTSAC 2 cut(s) 58, 154
TseI GCWGC 4 cut(s) 116, 119, 214, 217
Tsp45I GTSAC 2 cut(s) 58, 154
TspDTI ATGAA 3 cut(s) 24, 179, 190
TspGWI ACGGA 1 cut(s) 199
TspRI CASTG 1 cut(s) 63
Vha464I CTTAAG 2 cut(s) 25, 70
VpaK11BI GGWCC 1 cut(s) 173
VspI ATTAAT 1 cut(s) 42
XmiI GTMKAC 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.