RchiOBHm_Chr4g0386801

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000324
Physical Location & Seq
Reverse (-)
2170089 .. 2175072
4984 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36015

Sequence Viewer

Length: 642 bp
ATGATCTGGCTTAGAGAAGTGGGAGAGAAAGCAGTTAATCAATTGGAAAAATCAGTTAATTCAAAACTTGAAGATACTGTATCCAGGCAAATCGAGGCGCAGTTTCAAACATTGGGCAAACAAGCTCTTCAGTTAATTCAAAACTTGAAGATACTGTATCCAGGCAAATCAAGGCGCAGTTTCAAACATCGGGATGCTCTCAAGTCTAGCACAGAAGCTTCAATAGTACCTGCCTTTGAGAAGTCATGTATAGCCATGTTTGAGCAAGTAGATGCCACATTCCAGAAAGGAATGGTTGAACATGCAACTGTGGCTCAGCAGCATTATGAGTCTGCACTTTCGCCATTGGCCCATGCTTTAAGGGAAGCTATTAGCTCTGCATCATCAGTGACTCAAACCCTAAGCGGAGAACTGGCTGATGGTCAACGTGATGCAGCAGATGTGCTGACCTTCTTGAGGAAATTTGATGTTTCTATAGGAATGAGGTTAGAGGTTTTGGAATTTACTAGGAAGTTGCAAAATTTGGAATTCAGTAAACTGCATCAATTAATCAGCATATCACTATTTGCAAGGTTTACTGGCAACTTAAGAAGGAGCAAAAGTACTTGGTTATATCAAGAAACGGCATCAGTTTCAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

213

Amino Acids

23.96

Weight (kDa)

9.21

Isoelectric Point (pI)

39.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 238
AciI CCGC 1 cut(s) 405
AcsI RAATTY 4 cut(s) 461, 500, 520, 527
AcuI CTGAAG 1 cut(s) 113
AfaI GTAC 2 cut(s) 228, 604
AfiI CCNNNNNNNGG 1 cut(s) 456
AflII CTTAAG 1 cut(s) 586
AgsI TTSAA 9 cut(s) 63, 71, 107, 140, 148, 184, 222, 299, 636
AjnI CCWGG 2 cut(s) 83, 160
AluBI AGCT 4 cut(s) 125, 218, 368, 375
AluI AGCT 4 cut(s) 125, 218, 368, 375
AoxI GGCC 1 cut(s) 348
ApeKI GCWGC 2 cut(s) 319, 434
ApoI RAATTY 4 cut(s) 461, 500, 520, 527
AseI ATTAAT 1 cut(s) 548
AspLEI GCGC 2 cut(s) 100, 177
AspS9I GGNCC 1 cut(s) 349
BbvI GCAGC 2 cut(s) 331, 446
BccI CCATC 1 cut(s) 413
BceAI ACGGC 1 cut(s) 639
BciT130I CCWGG 2 cut(s) 85, 162
BciVI GTATCC 2 cut(s) 91, 168
BfaI CTAG 2 cut(s) 207, 507
BfmI CTRYAG 1 cut(s) 474
BfrI CTTAAG 1 cut(s) 586
BfuAI ACCTGC 1 cut(s) 238
BfuI GTATCC 2 cut(s) 91, 168
BisI GCNGC 2 cut(s) 320, 435
BlpI GCTNAGC 1 cut(s) 315
BlsI GCNGC 2 cut(s) 321, 436
BmcAI AGTACT 1 cut(s) 604
Bme1390I CCNGG 2 cut(s) 85, 162
BmgT120I GGNCC 1 cut(s) 349
BmrFI CCNGG 2 cut(s) 85, 162
BmsI GCATC 6 cut(s) 184, 262, 389, 421, 550, 635
Bpu10I CCTNAGC 1 cut(s) 401
Bpu1102I GCTNAGC 1 cut(s) 315
BpuEI CTTGAG 2 cut(s) 185, 475
BsaXI ACNNNNNCTCC 2 cut(s) 586, 616
Bsc4I CCNNNNNNNGG 1 cut(s) 456
Bse1I ACTGG 2 cut(s) 417, 583
BseBI CCWGG 2 cut(s) 85, 162
BseGI GGATG 1 cut(s) 199
BseLI CCNNNNNNNGG 1 cut(s) 456
BseMII CTCAG 1 cut(s) 329
BseNI ACTGG 2 cut(s) 417, 583
BseXI GCAGC 2 cut(s) 331, 446
BsgI GTGCAG 1 cut(s) 318
BshFI GGCC 1 cut(s) 350
BslI CCNNNNNNNGG 1 cut(s) 456
BsnI GGCC 1 cut(s) 350
Bsp143I GATC 1 cut(s) 3
Bsp1720I GCTNAGC 1 cut(s) 315
BspACI CCGC 1 cut(s) 405
BspANI GGCC 1 cut(s) 350
BspCNI CTCAG 1 cut(s) 328
BspMI ACCTGC 1 cut(s) 238
BspQI GCTCTTC 1 cut(s) 132
BspTI CTTAAG 1 cut(s) 586
BsrI ACTGG 2 cut(s) 417, 583
BssMI GATC 1 cut(s) 3
Bst2UI CCWGG 2 cut(s) 85, 162
Bst4CI ACNGT 3 cut(s) 79, 156, 310
Bst6I CTCTTC 1 cut(s) 132
BstAFI CTTAAG 1 cut(s) 586
BstDEI CTNAG 3 cut(s) 11, 315, 401
BstENI CCTNNNNNAGG 1 cut(s) 454
BstF5I GGATG 1 cut(s) 199
BstHHI GCGC 2 cut(s) 100, 177
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstNI CCWGG 2 cut(s) 85, 162
BstNSI RCATGY 1 cut(s) 305
BstSCI CCNGG 2 cut(s) 83, 160
BstSFI CTRYAG 1 cut(s) 474
BstV1I GCAGC 2 cut(s) 331, 446
BsuI GTATCC 2 cut(s) 91, 168
BsuRI GGCC 1 cut(s) 350
BtsCI GGATG 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 393
BveI ACCTGC 1 cut(s) 238
CfoI GCGC 2 cut(s) 100, 177
Cfr13I GGNCC 1 cut(s) 349
Csp6I GTAC 2 cut(s) 227, 603
CviAII CATG 4 cut(s) 246, 256, 302, 353
CviJI RGCY 9 cut(s) 10, 125, 218, 254, 314, 350, 368, 375, 416
CviKI_1 RGCY 9 cut(s) 10, 125, 218, 254, 314, 350, 368, 375, 416
CviQI GTAC 2 cut(s) 227, 603
DdeI CTNAG 3 cut(s) 11, 315, 401
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco57I CTGAAG 1 cut(s) 113
EcoNI CCTNNNNNAGG 1 cut(s) 454
EcoRI GAATTC 1 cut(s) 527
EcoRII CCWGG 2 cut(s) 83, 160
FaeI CATG 4 cut(s) 249, 259, 305, 356
FaiI YATR 9 cut(s) 247, 251, 257, 303, 327, 354, 476, 557, 613
FatI CATG 4 cut(s) 245, 255, 301, 352
Fnu4HI GCNGC 2 cut(s) 320, 435
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 2 cut(s) 320, 435
FspBI CTAG 2 cut(s) 207, 507
GlaI GCGC 2 cut(s) 99, 176
GluI GCNGC 2 cut(s) 320, 435
HaeIII GGCC 1 cut(s) 350
HhaI GCGC 2 cut(s) 100, 177
Hin1II CATG 4 cut(s) 249, 259, 305, 356
Hin6I GCGC 2 cut(s) 98, 175
HinP1I GCGC 2 cut(s) 98, 175
HincII GTYRAC 1 cut(s) 425
HindII GTYRAC 1 cut(s) 425
HindIII AAGCTT 1 cut(s) 216
HinfI GANTC 2 cut(s) 329, 391
Hpy166II GTNNAC 3 cut(s) 425, 536, 576
Hpy188III TCNNGA 4 cut(s) 191, 283, 454, 617
Hpy8I GTNNAC 3 cut(s) 425, 536, 576
HpyAV CCTTC 2 cut(s) 460, 585
HpyCH4III ACNGT 3 cut(s) 79, 156, 310
HpyCH4IV ACGT 1 cut(s) 427
HpyCH4V TGCA 7 cut(s) 305, 335, 380, 434, 517, 541, 569
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpyF3I CTNAG 3 cut(s) 11, 315, 401
HpySE526I ACGT 1 cut(s) 427
Hsp92II CATG 4 cut(s) 249, 259, 305, 356
HspAI GCGC 2 cut(s) 98, 175
Kzo9I GATC 1 cut(s) 3
LguI GCTCTTC 1 cut(s) 132
LmnI GCTCC 1 cut(s) 594
LpnPI CCDG 8 cut(s) 70, 97, 147, 174, 243, 296, 398, 564
Lsp1109I GCAGC 2 cut(s) 331, 446
LweI GCATC 6 cut(s) 184, 262, 389, 421, 550, 635
MaeI CTAG 2 cut(s) 207, 507
MaeII ACGT 1 cut(s) 427
MaeIII GTNAC 1 cut(s) 388
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 3 cut(s) 83, 119, 160
MfeI CAATTG 1 cut(s) 41
MluCI AATT 9 cut(s) 41, 58, 135, 461, 500, 520, 527, 545, 636
MlyI GAGTC 2 cut(s) 338, 385
MnlI CCTC 4 cut(s) 88, 450, 477, 484
MseI TTAA 7 cut(s) 36, 57, 134, 359, 548, 587, 640
MslI CAYNNNNRTG 1 cut(s) 192
MspCI CTTAAG 1 cut(s) 586
MspR9I CCNGG 2 cut(s) 85, 162
MunI CAATTG 1 cut(s) 41
MvaI CCWGG 2 cut(s) 85, 162
MwoI GCNNNNNNNGC 1 cut(s) 311
NdeII GATC 1 cut(s) 3
NlaIII CATG 4 cut(s) 249, 259, 305, 356
NmuCI GTSAC 1 cut(s) 388
NspI RCATGY 1 cut(s) 305
PciSI GCTCTTC 1 cut(s) 132
PkrI GCNGC 2 cut(s) 321, 436
PleI GAGTC 2 cut(s) 337, 385
PpsI GAGTC 2 cut(s) 337, 385
PshBI ATTAAT 1 cut(s) 548
Psp6I CCWGG 2 cut(s) 83, 160
PspGI CCWGG 2 cut(s) 83, 160
PspPI GGNCC 1 cut(s) 349
RsaI GTAC 2 cut(s) 228, 604
RsaNI GTAC 2 cut(s) 227, 603
RseI CAYNNNNRTG 1 cut(s) 192
SapI GCTCTTC 1 cut(s) 132
SaqAI TTAA 7 cut(s) 36, 57, 134, 359, 548, 587, 640
SatI GCNGC 2 cut(s) 320, 435
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 349
ScaI AGTACT 1 cut(s) 604
SchI GAGTC 2 cut(s) 338, 385
ScrFI CCNGG 2 cut(s) 85, 162
SfaNI GCATC 6 cut(s) 184, 262, 389, 421, 550, 635
SfcI CTRYAG 1 cut(s) 474
SmiMI CAYNNNNRTG 1 cut(s) 192
SmlI CTYRAG 3 cut(s) 200, 454, 586
SmoI CTYRAG 3 cut(s) 200, 454, 586
Sse9I AATT 9 cut(s) 41, 58, 135, 461, 500, 520, 527, 545, 636
SsiI CCGC 1 cut(s) 405
SspMI CTAG 2 cut(s) 207, 507
StyD4I CCNGG 2 cut(s) 83, 160
TaaI ACNGT 3 cut(s) 79, 156, 310
TaiI ACGT 1 cut(s) 430
TaqI TCGA 1 cut(s) 93
TasI AATT 9 cut(s) 41, 58, 135, 461, 500, 520, 527, 545, 636
TatI WGTACW 1 cut(s) 602
Tru1I TTAA 7 cut(s) 36, 57, 134, 359, 548, 587, 640
Tru9I TTAA 7 cut(s) 36, 57, 134, 359, 548, 587, 640
TscAI CASTG 1 cut(s) 393
TseFI GTSAC 1 cut(s) 388
TseI GCWGC 2 cut(s) 319, 434
Tsp45I GTSAC 1 cut(s) 388
TspRI CASTG 1 cut(s) 393
Vha464I CTTAAG 1 cut(s) 586
VspI ATTAAT 1 cut(s) 548
XagI CCTNNNNNAGG 1 cut(s) 454
XapI RAATTY 4 cut(s) 461, 500, 520, 527
XceI RCATGY 1 cut(s) 305
XspI CTAG 2 cut(s) 207, 507
ZrmI AGTACT 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.