RchiOBHm_Chr4g0389111

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000324
Physical Location & Seq
Forward (+)
4269076 .. 4269684
609 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36227

Sequence Viewer

Length: 138 bp
ATGGGTGCCATTGAGTGGGGGGTTGATGAAGAGTTTGCAGACAGTGACGTGAGGCTGGGGCTTCCCTGTATGGAGGCTGCTGCAGAACACTTCCAAATACCATCACGGCAATATCTAAGGCTCTTTCTAACGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

45

Amino Acids

5.1

Weight (kDa)

4.33

Isoelectric Point (pI)

38.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 5
AccB7I CCANNNNNTGG 1 cut(s) 15
AfiI CCNNNNNNNGG 1 cut(s) 15
AjiI CACGTC 1 cut(s) 49
AluBI AGCT 1 cut(s) 135
AluI AGCT 1 cut(s) 135
ApeKI GCWGC 2 cut(s) 77, 80
BanI GGYRCC 1 cut(s) 5
BbvI GCAGC 2 cut(s) 64, 67
BccI CCATC 1 cut(s) 109
BceAI ACGGC 1 cut(s) 122
BfaI CTAG 1 cut(s) 136
BfmI CTRYAG 1 cut(s) 81
BisI GCNGC 2 cut(s) 78, 81
BlsI GCNGC 2 cut(s) 79, 82
BmgBI CACGTC 1 cut(s) 49
BmiI GGNNCC 1 cut(s) 7
Bsc4I CCNNNNNNNGG 1 cut(s) 15
BseLI CCNNNNNNNGG 1 cut(s) 15
BseXI GCAGC 2 cut(s) 64, 67
BseYI CCCAGC 1 cut(s) 55
BshNI GGYRCC 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 15
BspLI GGNNCC 1 cut(s) 7
BspMAI CTGCAG 1 cut(s) 85
BspT107I GGYRCC 1 cut(s) 5
Bst4CI ACNGT 1 cut(s) 44
Bst6I CTCTTC 1 cut(s) 24
BstDEI CTNAG 1 cut(s) 116
BstSFI CTRYAG 1 cut(s) 81
BstV1I GCAGC 2 cut(s) 64, 67
BtrI CACGTC 1 cut(s) 49
BtsIMutI CAGTG 1 cut(s) 49
CviJI RGCY 5 cut(s) 55, 61, 77, 121, 135
CviKI_1 RGCY 5 cut(s) 55, 61, 77, 121, 135
DdeI CTNAG 1 cut(s) 116
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
FaiI YATR 1 cut(s) 71
Fnu4HI GCNGC 2 cut(s) 78, 81
Fsp4HI GCNGC 2 cut(s) 78, 81
FspBI CTAG 1 cut(s) 136
GluI GCNGC 2 cut(s) 78, 81
GsaI CCCAGC 1 cut(s) 59
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 2 cut(s) 38, 83
HpyF3I CTNAG 1 cut(s) 116
HpySE526I ACGT 1 cut(s) 48
LpnPI CCDG 2 cut(s) 41, 79
Lsp1109I GCAGC 2 cut(s) 64, 67
MaeI CTAG 1 cut(s) 136
MaeII ACGT 1 cut(s) 48
MaeIII GTNAC 1 cut(s) 44
MboII GAAGA 1 cut(s) 41
MnlI CCTC 2 cut(s) 45, 67
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 1 cut(s) 44
PflMI CCANNNNNTGG 1 cut(s) 15
PkrI GCNGC 2 cut(s) 79, 82
PspFI CCCAGC 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 7
PstI CTGCAG 1 cut(s) 85
SatI GCNGC 2 cut(s) 78, 81
SetI ASST 2 cut(s) 51, 137
SfcI CTRYAG 1 cut(s) 81
SgeI CNNG 4 cut(s) 61, 68, 78, 117
SspMI CTAG 1 cut(s) 136
TaaI ACNGT 1 cut(s) 44
TaiI ACGT 1 cut(s) 51
TscAI CASTG 1 cut(s) 49
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 2 cut(s) 77, 80
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 1 cut(s) 42
TspRI CASTG 1 cut(s) 49
Van91I CCANNNNNTGG 1 cut(s) 15
XspI CTAG 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.